Hybridization reaction kinetics of DNA probes on beads arrayed in a capillary enhanced by turbulent flow

Analytical Chemistry

Volumn 75, Issue 13, 2003, Pages 3079-3085

  Kohara, Yoshinobu ^a  

^a HITACHI LTD   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA PROBES;

CAPILLARY FLOW; DIFFUSION; INTERFACES (MATERIALS); LAMINAR FLOW; REACTION KINETICS; REYNOLDS NUMBER; TURBULENT FLOW;

DNA;

DNA;

ARTICLE; CHEMICAL REACTION KINETICS; DEVICE; DIFFUSION; DNA HYBRIDIZATION; DNA PROBE; LAMINAR FLOW; LIQUID; PARTICLE SIZE; PERFORMANCE; REACTION ANALYSIS; THEORY; TURBULENT FLOW;

BASE SEQUENCE; DNA PROBES; KINETICS; MICROSCOPY, FLUORESCENCE; MICROSPHERES; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RHEOLOGY;

EID: 0038676492     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0341214     Document Type: Article

References (27)

1. Lander, E. S.; et al. Nature 2001, 409, 860-921.
2. Venter, J. C.; et al, Science 2001, 291, 1304-1351.
3. Khan, J.; Bittner, M. L.; Chen, Y.; Meltzer, P. S.; Trent, J. M. Biochim. Biophys. Acta 1999, 1423, 17-28.
4. Diamandis, E. P. Clin. Chem. 2000, 46, 1523-1525.
5. Fodor, S. P.; Read, J. L.; Pirrung, M. C.; Stryer L.; Lu, A. T.; Solas, D. Science 1991, 251, 767-773.
6. Lockhart D. J.; Dong H.; Byrne M. C.; Follettie M. T.; Gallo M. V.; Chee M. S.; Mittmann M.; Wang C.; Kobayashi M.; Horton H.; Brown E. L. Nat. Biotechnol. 1996, 14, 1675-1680.
7. Fan, J. B.; Chen, X.; Halushka, M. K.; Berno, A.; Huang, X.; Ryder, T.; Lipshutz, R. J.; Lockhart, D. J.; Chakravarti, A. Genome Res. 2000, 10, 853-860.
8. Sapolsky, R. J.; Hsie, L.; Berno, A.; Ghandour, G.; Mittmann, M.; Fan, J. B. Genet. Anal. 1999, 14, 187-192.
9. Schena, M.; Brown, P. O. Science 1995, 270, 467-470.
10. DeRisi, J.; Penland, L.; Brown, P. O.; Bittner, M. L.; Meltzer, P. S.; Ray, M.; Chen, Y.; Su, Y. A.; Trent, J. M. Nat. Genet. 1996, 14, 457-460.
11. Fulton, R. J.; McDade, R. L.; Smith, P. L.; Kienker, L. J.; Kettman J. R., Jr. Clin. Chem. 1997, 43, 1749-1756.
12. Taylor, J. D.; Briley, D.; Nguyen, Q.; Long, K.; Iannone, M. A.; Li, M. S.; Ye, F.; Afshari, A.; Lai, E.; Wagner, M.; Chen, J.; Weiner, M. P. Biotechniques 2001, 30, 661-669.
13. Fujimura, N.; Kohara, Y.; Okano, K.; Yohda, M.; Kambara, H. J. Biosci. Bioeng. 2002, 94, 368-370.
14. Walt, D. R. Science 2000, 287, 451-452.
15. Ferguson, J. A.; Steemers, F. J.; Walt, D. R. Anal. Chem. 2000, 72, 5618-5624.
16. Reyes, D, R.; Iossifidis, D.; Auroux, P. A.; Manz, A. Anal. Chem. 2002, 74, 2623-2636.
17. Auroux, P. A.; Iossifidis, D.; Reyes, D. R.; Manz, A. Anal. Chem. 2002, 74, 2637-2652.
18. Shoji, S. In Microsystem Technology in Chemistry and Life Sciences; Manz, A., Becker, H., EdS.; Springer-Verlag: Heidelberg, 1999.
19. Kohara, Y.; Noda, H.; Okano, K.; Kambara, H.; Nucleic Acids Res. 2002, 30, e87.
20. Noda, H.; Kohara, Y.: Okano, K.; Kambara, H. Anal. Chem., in press.
21. Landau, L. D.; Lifshitz, E. M. Fluid Mechanics, 2nd ed.: Butterworth-Heinemann: Oxford, 1987; Chapter 17, 43, and 60.
22. Schlichting, H. Boundary-Layer Theory, 7th ed.: McGraw-Hill: New York, 1979; Chapter II.
23. Chilton, T. H.; Colburn, A. P. Ind. Eng. Chem. 1934, 26, 1183-1187.
24. Okamoto, T.; Suzuki, T.; Yamamoto, N. Nat. Biotechnol. 2000, 18, 438-441.
25. Chrisey, L. A.; Lee, G. U.; O'Ferrall, C. E. Nucleic Acids Res. 1996, 24, 3031-3039.
26. Nkodo, A. E.; Garnier, J. M.; Tinland, B.; Ren, H.; Desruisseaux, C.; McCormick, L. C.; Douin, G.; Slater, G. W. Electrophoresis 2001, 22, 2424-2432.
27. Kubo, R. Statistical Mechanics: North-Holland Publishing: Amsterdam, 1965; Chapter 6.