메뉴 건너뛰기




Volumn 98, Issue 12, 2010, Pages 2954-2963

An electrostatic model for DNA surface hybridization

Author keywords

[No Author keywords available]

Indexed keywords


EID: 77953608427     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.03.017     Document Type: Article
Times cited : (98)

References (46)
  • 2
    • 13944271437 scopus 로고    scopus 로고
    • Physicochemical perspectives on DNA microarray and biosensor technologies
    • Levicky, R., and A. Horgan. 2005. Physicochemical perspectives on DNA microarray and biosensor technologies. Trends Biotechnol. 23: 143-149.
    • (2005) Trends Biotechnol. , vol.23 , pp. 143-149
    • Levicky, R.1    Horgan, A.2
  • 3
    • 44449137882 scopus 로고    scopus 로고
    • DNA surface hybridization regimes
    • Gong, P., and R. Levicky. 2008. DNA surface hybridization regimes. Proc. Natl. Acad. Sci. USA. 105: 5301-5306.
    • (2008) Proc. Natl. Acad. Sci. USA. , vol.105 , pp. 5301-5306
    • Gong, P.1    Levicky, R.2
  • 4
    • 0035945270 scopus 로고    scopus 로고
    • The effect of surface probe density on DNA hybridization
    • Peterson, A. W., R. J. Heaton, and R. M. Georgiadis. 2001. The effect of surface probe density on DNA hybridization. Nucleic Acids Res. 29: 5163-5.168.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5163-5168
    • Peterson, A.W.1    Heaton, R.J.2    Georgiadis, R.M.3
  • 5
    • 0037065343 scopus 로고    scopus 로고
    • Hybridization of mismatched or partially matched DNA at surfaces
    • Peterson, A. W., L. K. Wolf, and R. M. Georgiadis. 2002. Hybridization of mismatched or partially matched DNA at surfaces. J. Am. Chem. Soc. 124: 14601-14607.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 14601-14607
    • Peterson, A.W.1    Wolf, L.K.2    Georgiadis, R.M.3
  • 6
    • 14844292759 scopus 로고    scopus 로고
    • Characterization of grafting density and binding efficiency of DNA and proteins on gold surfaces
    • Castelino, K., B. Kannan, and A. Majumdar. 2005. Characterization of grafting density and binding efficiency of DNA and proteins on gold surfaces. Langmuir. 21: 1956-1961.
    • (2005) Langmuir. , vol.21 , pp. 1956-1961
    • Castelino, K.1    Kannan, B.2    Majumdar, A.3
  • 7
    • 30344464107 scopus 로고    scopus 로고
    • Chemomechanics of surface stresses induced by DNA hybridization
    • Stachowiak, J. C., M. Yue, ..., A. Majumdar. 2006. Chemomechanics of surface stresses induced by DNA hybridization. Langmuir. 22: 263-268.
    • (2006) Langmuir. , vol.22 , pp. 263-268
    • Stachowiak, J.C.1    Yue, M.2    Majumdar, A.3
  • 8
    • 33646727874 scopus 로고    scopus 로고
    • Hybridization behavior of mixed DNA/alkylthiol monolayers on gold: Characterization by surface plasmon resonance and 32P radiometric assay
    • Gong, P., C.-Y. Lee, ..., D. W. Grainger. 2006. Hybridization behavior of mixed DNA/alkylthiol monolayers on gold: characterization by surface plasmon resonance and 32P radiometric assay. Anal. Chem. 78: 3326-3334.
    • (2006) Anal. Chem. , vol.78 , pp. 3326-3334
    • Gong, P.1    Lee, C.-Y.2    Grainger, D.W.3
  • 9
    • 0030825711 scopus 로고    scopus 로고
    • Characterization of DNA probes immobilized on gold surfaces
    • Herne, T., and M. Tarlov, 1997. Characterization of DNA probes immobilized on gold surfaces. J. Am. Chem. Soc. 119: 8916-8920.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8916-8920
    • Herne, T.1    Tarlov, M.2
  • 10
    • 0032533559 scopus 로고    scopus 로고
    • Electrochemical quantitation of DNA immobilized on gold
    • Steel, A. B., T. M. Herne, and M. J. Tarlov. 1998. Electrochemical quantitation of DNA immobilized on gold. Anal. Chem. 70: 4670-4677.
    • (1998) Anal. Chem. , vol.70 , pp. 4670-4677
    • Steel, A.B.1    Herne, T.M.2    Tarlov, M.J.3
  • 11
    • 33750009863 scopus 로고    scopus 로고
    • Kinetics of oligonucleotide hybridization to photolithographically patterned DNA arrays
    • Glazer, M., J. A. Fidanza,..., C. W. Frank. 2006. Kinetics of oligonucleotide hybridization to photolithographically patterned DNA arrays. Anal. Biochem. 358: 225-238.
    • (2006) Anal. Biochem. , vol.358 , pp. 225-238
    • Glazer, M.1    Fidanza, J.A.2    Frank, C.W.3
  • 12
    • 61649123047 scopus 로고    scopus 로고
    • Quantitative study of the effect of coverage on the hybridization efficiency of surfacebound DNA nanostructures
    • Mirmomtaz, E., M. Castronovo,..., L. Casalis. 2008. Quantitative study of the effect of coverage on the hybridization efficiency of surfacebound DNA nanostructures. Nano Lett. 8: 4134-4139.
    • (2008) Nano Lett. , vol.8 , pp. 4134-4139
    • Mirmomtaz, E.1    Castronovo, M.2    Casalis, L.3
  • 13
    • 34848917296 scopus 로고    scopus 로고
    • Controlling the surface density of DNA on gold by electrically induced desorption
    • Arinaga, K., U. Rant, ..., N. Yokoyama. 2007. Controlling the surface density of DNA on gold by electrically induced desorption. Biosens. Bioelectron. 23: 326-331.
    • (2007) Biosens. Bioelectron. , vol.23 , pp. 326-331
    • Arinaga, K.1    Rant, U.2    Yokoyama, N.3
  • 14
    • 0034669474 scopus 로고    scopus 로고
    • A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles
    • Demers, L. M., C. A. Mirkin, ...., G. Viswanadham. 2000. A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles. Anal. Chem. 72: 5535-5541.
    • (2000) Anal. Chem. , vol.72 , pp. 5535-5541
    • Demers, L.M.1    Mirkin, C.A.2    Viswanadham, G.3
  • 15
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • Draghici, S., P. Khatri,..., Z. Szallasi. 2006. Reliability and reproducibility issues in DNA microarray measurements. Trends Genet. 22: 101-109.
    • (2006) Trends Genet. , vol.22 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Szallasi, Z.3
  • 16
    • 33646172937 scopus 로고    scopus 로고
    • On the hybridization isotherms of DNA microarrays: The Langmuir model and its extensions
    • Halperin, A., A. Buhot, and E. B. Zhulina. 2006. On the hybridization isotherms of DNA microarrays: the Langmuir model and its extensions. J. Phys. Condes. Matter. 18: S463-S490.
    • (2006) J. Phys. Condes. Matter. , vol.18
    • Halperin, A.1    Buhot, A.2    Zhulina, E.B.3
  • 17
    • 41849151140 scopus 로고    scopus 로고
    • Making it stick: Convection, reaction and diffusion in surface-based biosensors
    • Squires, T. M., R. J. Messinger, and S. R. Manalis. 2008. Making it stick: convection, reaction and diffusion in surface-based biosensors. Nat. Biotechnol. 26: 417-426.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 417-426
    • Squires, T.M.1    Messinger, R.J.2    Manalis, S.R.3
  • 18
    • 72849122589 scopus 로고    scopus 로고
    • Directed hybridization and melting of DNA linkers using counterion-screened electric fields
    • Wong, I. Y., and N. A. Melosh. 2009. Directed hybridization and melting of DNA linkers using counterion-screened electric fields. Nano Lett. 9: 3521-3526.
    • (2009) Nano Lett. , vol.9 , pp. 3521-3526
    • Wong, I.Y.1    Melosh, N.A.2
  • 19
    • 0028881098 scopus 로고
    • The biophysics of DNA hybridization with immobilized oligonucleotide probes
    • Chan, V., D. J. Graves, and S. E. McKenzie. 1995. The biophysics of DNA hybridization with immobilized oligonucleotide probes. Biophys. J. 69: 2243-2255.
    • (1995) Biophys. J. , vol.69 , pp. 2243-2255
    • Chan, V.1    Graves, D.J.2    McKenzie, S.E.3
  • 20
    • 0037620483 scopus 로고    scopus 로고
    • Modeling of DNA hybridization kinetics for spatially resolved biochips
    • Erickson, D., D. Li, and U. J. Krull. 2003. Modeling of DNA hybridization kinetics for spatially resolved biochips. Anal. Biochem. 317: 186-200.
    • (2003) Anal. Biochem. , vol.317 , pp. 186-200
    • Erickson, D.1    Li, D.2    Krull, U.J.3
  • 21
    • 0037319670 scopus 로고    scopus 로고
    • Surface electrostatic effects in oligonucleotide microarrays: Control and optimization of binding thermodynamics
    • Vainrub, A., and B. M. Pettitt. 2003. Surface electrostatic effects in oligonucleotide microarrays: control and optimization of binding thermodynamics. Biopolymers. 68: 265-270.
    • (2003) Biopolymers. , vol.68 , pp. 265-270
    • Vainrub, A.1    Pettitt, B.M.2
  • 22
    • 0001232644 scopus 로고    scopus 로고
    • Thermodynamics of association to a molecule immobilized in an electric double layer
    • Vainrub, A., and B. M. Pettitt. 2000. Thermodynamics of association to a molecule immobilized in an electric double layer. Chem. Phys. Lett. 323: 160-166.
    • (2000) Chem. Phys. Lett. , vol.323 , pp. 160-166
    • Vainrub, A.1    Pettitt, B.M.2
  • 24
    • 1142298544 scopus 로고    scopus 로고
    • Sensitivity, specificity, and the hybridization isotherms of DNA chips
    • Halperin, A., A. Buhot, and E. B. Zhulina. 2004. Sensitivity, specificity, and the hybridization isotherms of DNA chips. Biophys. J. 86: 718-730. (Pubitemid 38209520)
    • (2004) Biophysical Journal , vol.86 , Issue.2 , pp. 718-730
    • Halperin, A.S.1    Buhot, A.2    Zhulina, E.B.3
  • 25
    • 23244444650 scopus 로고    scopus 로고
    • Brush effects on DNA chips: Thermodynamics, kinetics, and design guidelines
    • Halperin, A., A. Buhot, and E. B. Zhulina. 2005. Brush effects on DNA chips: thermodynamics, kinetics, and design guidelines. Biophys. J. 89: 796-811.
    • (2005) Biophys. J. , vol.89 , pp. 796-811
    • Halperin, A.1    Buhot, A.2    Zhulina, E.B.3
  • 26
    • 1842530707 scopus 로고    scopus 로고
    • Hybridization dynamics of surface immobilized DNA
    • Hagan, M. F., and A. K. Chakraborty. 2004. Hybridization dynamics of surface immobilized DNA. J. Chem. Phys. 120: 4958-4968.
    • (2004) J. Chem. Phys. , vol.120 , pp. 4958-4968
    • Hagan, M.F.1    Chakraborty, A.K.2
  • 27
    • 0036055199 scopus 로고    scopus 로고
    • The physics of charge inversion in chemical and biological systems
    • Grosberg, A. Y., T. T. Nguyen, and B. I. Shklovskii. 2002. The physics of charge inversion in chemical and biological systems. Rev. Mod. Phys. 74: 329-345.
    • (2002) Rev. Mod. Phys. , vol.74 , pp. 329-345
    • Grosberg, A.Y.1    Nguyen, T.T.2    Shklovskii, B.I.3
  • 28
    • 26644435758 scopus 로고    scopus 로고
    • Theory of polyelectrolytes in solutions and at surfaces
    • Dobrynin, A. V., and M. Rubinstein. 2005. Theory of polyelectrolytes in solutions and at surfaces. Prog. Polym. Sci. 30: 1049-1118.
    • (2005) Prog. Polym. Sci. , vol.30 , pp. 1049-1118
    • Dobrynin, A.V.1    Rubinstein, M.2
  • 29
    • 43949107894 scopus 로고    scopus 로고
    • Functional polymer brushes in aqueous media from self-assembled and surface-initiated polymers
    • Toomey, R., and M. Tirrell. 2008. Functional polymer brushes in aqueous media from self-assembled and surface-initiated polymers. Annu. Rev. Phys. Chem. 59: 493-5.17.
    • (2008) Annu. Rev. Phys. Chem. , vol.59 , pp. 493-517
    • Toomey, R.1    Tirrell, M.2
  • 30
    • 33747202410 scopus 로고    scopus 로고
    • Strongly charged polymer brushes
    • O'Shaughnessy, B., and Q. Yang. 2006. Strongly charged polymer brushes. Europhys. Lett. 75: 427-433.
    • (2006) Europhys. Lett. , vol.75 , pp. 427-433
    • O'Shaughnessy, B.1    Yang, Q.2
  • 31
    • 0033884336 scopus 로고    scopus 로고
    • Immobilization of nucleic acids at solid surfaces: Effect of oligonucleotide length on layer assembly
    • Steel, A. B., R. L. Levicky, ...., M. J. Tarlov. 2000. Immobilization of nucleic acids at solid surfaces: effect of oligonucleotide length on layer assembly. Biophys. J. 79: 975-981.
    • (2000) Biophys. J. , vol.79 , pp. 975-981
    • Steel, A.B.1    Levicky, R.L.2    Tarlov, M.J.3
  • 32
    • 33846965613 scopus 로고    scopus 로고
    • Differential ionic permeation of DNA-modified electrodes
    • Ceres, D. M., A. K. Udit, ..., J. K. Barton. 2007. Differential ionic permeation of DNA-modified electrodes. J. Phys. Chem. B. 111: 663-668.
    • (2007) J. Phys. Chem. B. , vol.111 , pp. 663-668
    • Ceres, D.M.1    Udit, A.K.2    Barton, J.K.3
  • 33
    • 0037473548 scopus 로고    scopus 로고
    • Quantitative analysis and characterization of DNA immobilized on gold
    • Petrovykh, D. Y., H. Kimura-Suda,..., M. J. Tarlov. 2003. Quantitative analysis and characterization of DNA immobilized on gold. J. Am. Chem. Soc. 125: 5219-5226.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 5219-5226
    • Petrovykh, D.Y.1    Kimura-Suda, H.2    Tarlov, M.J.3
  • 34
    • 0035957341 scopus 로고    scopus 로고
    • Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches
    • Heaton, R. J., A. W. Peterson, and R. M. Georgiadis. 2001. Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches. Proc. Natl. Acad. ScI. USA. 98: 3701-3704.
    • (2001) Proc. Natl. Acad. ScI. USA. , vol.98 , pp. 3701-3704
    • Heaton, R.J.1    Peterson, A.W.2    Georgiadis, R.M.3
  • 35
    • 0017524519 scopus 로고
    • Polymer adsorption on small spheres. A. scaling approach
    • Alexander, S. 1977. Polymer adsorption on small spheres. A. scaling approach. J. Phys. France. 38: 977-981.
    • (1977) J. Phys. France. , vol.38 , pp. 977-981
    • Alexander, S.1
  • 36
    • 0000559453 scopus 로고
    • Scaling theory of polymer adsorption
    • de Gennes, P.-G. 1976. Scaling theory of polymer adsorption. J. Phys. France. 37: 1443.
    • (1976) J. Phys. France. , vol.37 , pp. 1443
    • De Gennes, P.-G.1
  • 37
    • 0026153027 scopus 로고
    • Colloid stabilization with grafted polyelectrolytes
    • Pincus, P. 1991. Colloid stabilization with grafted polyelectrolytes. Macromolecules. 24: 2912-2919.
    • (1991) Macromolecules. , vol.24 , pp. 2912-2919
    • Pincus, P.1
  • 38
    • 0027595558 scopus 로고
    • Charged diblock copolymers at interfaces
    • Wittmer, J., and J. F. Joanny. 1993. Charged diblock copolymers at interfaces. Macromolecules. 26: 2691-2697.
    • (1993) Macromolecules. , vol.26 , pp. 2691-2697
    • Wittmer, J.1    Joanny, J.F.2
  • 39
    • 0028485937 scopus 로고
    • Diagram of the states of a grafted polyelectrolyte layer
    • Borisov, O. V., E. B. Zhulina, and T. M. Birshtein. 1994. Diagram of the states of a grafted polyelectrolyte layer. Macromolecules. 27: 4795-4803.
    • (1994) Macromolecules. , vol.27 , pp. 4795-4803
    • Borisov, O.V.1    Zhulina, E.B.2    Birshtein, T.M.3
  • 40
    • 6244273869 scopus 로고    scopus 로고
    • Steric effects in electrolytes: A modified Poisson-Boltzmann equation
    • Borukhov, I., D. Andelman, and H. Orland. 1997. Steric effects in electrolytes: a modified Poisson-Boltzmann equation. Phys. Rev. Lett. 79: 435.
    • (1997) Phys. Rev. Lett. , vol.79 , pp. 435
    • Borukhov, I.1    Andelman, D.2    Orland, H.3
  • 41
    • 36048952831 scopus 로고    scopus 로고
    • Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory
    • Chu, V. B., Y. Bai,..., S. Doniach. 2007. Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophys. J. 93: 3202-3209.
    • (2007) Biophys. J. , vol.93 , pp. 3202-3209
    • Chu, V.B.1    Bai, Y.2    Doniach, S.3
  • 42
    • 0032581927 scopus 로고    scopus 로고
    • Using self-assembly to control the structure of DNA monolayers on gold: A neutron reflectivity study
    • Levicky, R., T. Herne, ..., S. Satija. 1998. Using self-assembly to control the structure of DNA monolayers on gold: a neutron reflectivity study. J. Am. Chem. Soc. 120: 9787.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 9787
    • Levicky, R.1    Herne, T.2    Satija, S.3
  • 43
    • 2442658071 scopus 로고    scopus 로고
    • Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS)
    • Yu, F., D. Yao, and W. Knoll. 2004. Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS). Nucleic Acids Res. 32:e75.
    • (2004) Nucleic Acids Res. , vol.32
    • Yu, F.1    Yao, D.2    Knoll, W.3
  • 44
    • 0015223584 scopus 로고
    • Relaxation kinetics of dimer formation by self complementary oligonucleotides
    • Craig, M. E., D. M. Crothers, and P. Doty. 1971. Relaxation kinetics of dimer formation by self complementary oligonucleotides. J. Mol. Biol. 62: 383-401.
    • (1971) J. Mol. Biol. , vol.62 , pp. 383-401
    • Craig, M.E.1    Crothers, D.M.2    Doty, P.3
  • 45
    • 0031029961 scopus 로고    scopus 로고
    • Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control
    • Sosnowski, R. G., E. Tu, ..., M. J. Heller. 1997. Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control. Proc. Natl. Acad. Sci. USA. 94: 1119-1123.
    • (1997) Proc. Natl. Acad. Sci. USA. , vol.94 , pp. 1119-1123
    • Sosnowski, R.G.1    Tu, E.2    Heller, M.J.3
  • 46
    • 53549130463 scopus 로고    scopus 로고
    • Detection of mismatched DNA on partially negatively charged diamond surfaces by optical and Potentiometric methods
    • Kuga, S., J.-H. Yang,.., H. Kawarada. 2008. Detection of mismatched DNA on partially negatively charged diamond surfaces by optical and Potentiometric methods. J. Am. Chem. Soc. 130: 13251-13263.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 13251-13263
    • Kuga, S.1    Yang, J.-H.2    Kawarada, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.