-
1
-
-
13944271437
-
Physicochemical perspectives on DNA microarray and biosensor technologies
-
Levicky, R., and A. Horgan. 2005. Physicochemical perspectives on DNA microarray and biosensor technologies. Trends Biotechnol. 23: 143-149.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 143-149
-
-
Levicky, R.1
Horgan, A.2
-
2
-
-
33645808222
-
Large-scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
-
Wang, Y., C. Barbacioru, F. Hyland, W. Xiao, K. L. Hunkapiller, J. Blake, F. Chang, C. Gonzalez, L. Zhang, and R. R. Samaha. 2006. Large-scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics. 7:59.
-
(2006)
BMC Genomics
, vol.7
, pp. 59
-
-
Wang, Y.1
Barbacioru, C.2
Hyland, F.3
Xiao, W.4
Hunkapiller, K.L.5
Blake, J.6
Chang, F.7
Gonzalez, C.8
Zhang, L.9
Samaha, R.R.10
-
3
-
-
33744542889
-
Relationship between gene expression and observed intensities in DNA microarrays-a modeling study
-
Held, G. A., G. Grinstein, and Y. Tu. 2006. Relationship between gene expression and observed intensities in DNA microarrays-a modeling study. Nucleic Acids Res. 34:e70.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Held, G.A.1
Grinstein, G.2
Tu, Y.3
-
4
-
-
34247899099
-
Multiplex SNP discrimination
-
Fish, D. J., M. T. Horne, R. P. Searles, G. P. Brewood, and A. S. Benight. 2007. Multiplex SNP discrimination. Biophys. J. 92:L89-L91.
-
(2007)
Biophys. J
, vol.92
-
-
Fish, D.J.1
Horne, M.T.2
Searles, R.P.3
Brewood, G.P.4
Benight, A.S.5
-
5
-
-
84934441550
-
Complementary techniques: Validation of gene expression data by quantitative real time PCR
-
Provenzano, M., and S. Mocellin. 2007. Complementary techniques: validation of gene expression data by quantitative real time PCR. Adv. Exp. Med. Biol. 593:66-73.
-
(2007)
Adv. Exp. Med. Biol
, vol.593
, pp. 66-73
-
-
Provenzano, M.1
Mocellin, S.2
-
6
-
-
0242480974
-
-
Berrar, D. P, W. Dubitzky, and M. Granzow, editors, Kluwer Academic Publishing, New York
-
Berrar, D. P., W. Dubitzky, and M. Granzow, editors. 2003. A Practical Approach to Microarray Data Analysis. Kluwer Academic Publishing, New York.
-
(2003)
A Practical Approach to Microarray Data Analysis
-
-
-
7
-
-
34247195104
-
Microarrays: An overview
-
Lee, N. H., and A. I. Saeed. 2007. Microarrays: an overview. Methods Mol. Biol. 353:265-300.
-
(2007)
Methods Mol. Biol
, vol.353
, pp. 265-300
-
-
Lee, N.H.1
Saeed, A.I.2
-
8
-
-
18244389201
-
Standardizing global gene expression analysis between laboratories and across platforms
-
Weis, B. K. 2005. Standardizing global gene expression analysis between laboratories and across platforms. Nat. Methods. 2:351-356.
-
(2005)
Nat. Methods
, vol.2
, pp. 351-356
-
-
Weis, B.K.1
-
9
-
-
33750949730
-
Surface modification for DNA and protein microarrays
-
Oh, S. J., B. J. Hong, K. Y. Choi, and J. W. Park. 2006. Surface modification for DNA and protein microarrays. OMICS: J. Integr. Biol. 10:327-343.
-
(2006)
OMICS: J. Integr. Biol
, vol.10
, pp. 327-343
-
-
Oh, S.J.1
Hong, B.J.2
Choi, K.Y.3
Park, J.W.4
-
10
-
-
34347249220
-
Array feature size influences nucleic acid surface capture in DNA microarrays
-
Dandy, D. S., P. Wu, and D. W. Grainger. 2007. Array feature size influences nucleic acid surface capture in DNA microarrays. Proc. Natl. Acad. Sci. USA. 104:8223-8228.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 8223-8228
-
-
Dandy, D.S.1
Wu, P.2
Grainger, D.W.3
-
11
-
-
0029910179
-
Theoretical analysis of the kinetics of DNA hybridization with gel-immobilized oligonucleotides
-
Livshits, M. A., and A. D. Mirzabekov. 1996. Theoretical analysis of the kinetics of DNA hybridization with gel-immobilized oligonucleotides. Biophys. J. 71:2795-2801.
-
(1996)
Biophys. J
, vol.71
, pp. 2795-2801
-
-
Livshits, M.A.1
Mirzabekov, A.D.2
-
12
-
-
0000538122
-
Absorption and surface diffusion of DNA oligonucleotides at liquid/solid interfaces
-
Chan, V., D. J. Graves, P. Fortina, and S. E. McKenzie. 1997. Absorption and surface diffusion of DNA oligonucleotides at liquid/solid interfaces. Langmuir. 13:320-329.
-
(1997)
Langmuir
, vol.13
, pp. 320-329
-
-
Chan, V.1
Graves, D.J.2
Fortina, P.3
McKenzie, S.E.4
-
13
-
-
0037102247
-
Use of hybridization kinetics for differentiating specific from nonspecific binding to oligonucleotide microarrays
-
Dai, H., M. Meyer, S. Stepaniants, M. Ziman, and R. Stoughton. 2002. Use of hybridization kinetics for differentiating specific from nonspecific binding to oligonucleotide microarrays. Nucleic Acids Res. 30:e86.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Dai, H.1
Meyer, M.2
Stepaniants, S.3
Ziman, M.4
Stoughton, R.5
-
14
-
-
0037115527
-
Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-μm-thick chamber
-
Adey, N. B., M. Lei, M. T. Howard, J. D. Jensen, D. A. Mayo, D. L. Butel, S. C. Coffin, T. C. Moyer, D. E. Slade, M. K. Spute, A. M. Hancock, G. T. Eisenhoffer, B. K. Dalley, and M. R. McNeely. 2002. Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-μm-thick chamber. Anal. Chem. 74:6413-6417.
-
(2002)
Anal. Chem
, vol.74
, pp. 6413-6417
-
-
Adey, N.B.1
Lei, M.2
Howard, M.T.3
Jensen, J.D.4
Mayo, D.A.5
Butel, D.L.6
Coffin, S.C.7
Moyer, T.C.8
Slade, D.E.9
Spute, M.K.10
Hancock, A.M.11
Eisenhoffer, G.T.12
Dalley, B.K.13
McNeely, M.R.14
-
15
-
-
10644274582
-
Electrokinetically controlled DNA hybridization microfluidic chip enabling rapid target analysis
-
Erickson, D., X. Liu, U. Krull, and D. Li. 2004. Electrokinetically controlled DNA hybridization microfluidic chip enabling rapid target analysis. Anal. Chem. 76:7269-7277.
-
(2004)
Anal. Chem
, vol.76
, pp. 7269-7277
-
-
Erickson, D.1
Liu, X.2
Krull, U.3
Li, D.4
-
16
-
-
33747876481
-
Merging microfluidics with microarray-based bioassays
-
Situma, C., M. Hashimoto, and S. A. Soper. 2006. Merging microfluidics with microarray-based bioassays. Biomol. Eng. 23:213-231.
-
(2006)
Biomol. Eng
, vol.23
, pp. 213-231
-
-
Situma, C.1
Hashimoto, M.2
Soper, S.A.3
-
17
-
-
34250768942
-
Effects of external transport on discrimination between perfect and mismatch duplexes on gel-based oligonucleotide microchips
-
Sorokin, N. V., D. Y. Yurasov, A. L. Cherepanov, J. M. Kozhekbaeva, V. R. Chechetkin, O. A. Gran, M. A. Livshits, T. V. Nasedkina, and A. S. Zasedatelev. 2007. Effects of external transport on discrimination between perfect and mismatch duplexes on gel-based oligonucleotide microchips. J. Biomol. Struct. Dyn. 24:571-578.
-
(2007)
J. Biomol. Struct. Dyn
, vol.24
, pp. 571-578
-
-
Sorokin, N.V.1
Yurasov, D.Y.2
Cherepanov, A.L.3
Kozhekbaeva, J.M.4
Chechetkin, V.R.5
Gran, O.A.6
Livshits, M.A.7
Nasedkina, T.V.8
Zasedatelev, A.S.9
-
19
-
-
0037215734
-
The importance of thermodynamic equilibrium for high throughput gene expression arrays
-
Bhanot, G., Y. Louzoun, J. Zhu, and C. DeLisi. 2003. The importance of thermodynamic equilibrium for high throughput gene expression arrays. Biophys. J. 84:124-135.
-
(2003)
Biophys. J
, vol.84
, pp. 124-135
-
-
Bhanot, G.1
Louzoun, Y.2
Zhu, J.3
DeLisi, C.4
-
20
-
-
33646181184
-
A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants
-
Bishop, J., S. Blair, and A. Chagovetz. 2006. A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants. Biophys. J. 90:831-840.
-
(2006)
Biophys. J
, vol.90
, pp. 831-840
-
-
Bishop, J.1
Blair, S.2
Chagovetz, A.3
-
21
-
-
33646172937
-
On the hybridization isotherms of DNA microarrays: The Langmuir model and its extensions
-
Halperin, A., A. Buhot, and E. B. Zhulina. 2006. On the hybridization isotherms of DNA microarrays: the Langmuir model and its extensions. J. Phys. Condens. Matter. 18:S463-S490.
-
(2006)
J. Phys. Condens. Matter
, vol.18
-
-
Halperin, A.1
Buhot, A.2
Zhulina, E.B.3
-
22
-
-
33845368662
-
Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions
-
Horne, M. T., D. J. Fish, and A. S. Benight. 2006. Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions. Biophys. J. 91:4133-4153.
-
(2006)
Biophys. J
, vol.91
, pp. 4133-4153
-
-
Horne, M.T.1
Fish, D.J.2
Benight, A.S.3
-
23
-
-
1142298544
-
Sensitivity, specificity, and the hybridization isotherms of DNA chips
-
Halperin, A., A. Buhot, and E. B. Zhulina. 2004. Sensitivity, specificity, and the hybridization isotherms of DNA chips. Biophys. J. 86:718-730.
-
(2004)
Biophys. J
, vol.86
, pp. 718-730
-
-
Halperin, A.1
Buhot, A.2
Zhulina, E.B.3
-
24
-
-
0036254768
-
Cross-hybridization on PCR-spotted microarrays
-
Wren, J. D., A. Kulkarni, J. Joslin, R. A. Butow, and R. G. Harold. 2002. Cross-hybridization on PCR-spotted microarrays. IEEE Eng. Med. Biol. 21:71-75.
-
(2002)
IEEE Eng. Med. Biol
, vol.21
, pp. 71-75
-
-
Wren, J.D.1
Kulkarni, A.2
Joslin, J.3
Butow, R.A.4
Harold, R.G.5
-
25
-
-
33746361200
-
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
-
Okoniewski, M. J., and C. J. Miller. 2006. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. BMC Bioinformatics. 7:276.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 276
-
-
Okoniewski, M.J.1
Miller, C.J.2
-
26
-
-
27744491204
-
Competitive hybridization kinetics reveals unexpected behavior patterns
-
Zhang, Y., D. A. Hammer, and D. J. Graves. 2005. Competitive hybridization kinetics reveals unexpected behavior patterns. Biophys. J. 89:2950-2959.
-
(2005)
Biophys. J
, vol.89
, pp. 2950-2959
-
-
Zhang, Y.1
Hammer, D.A.2
Graves, D.J.3
-
27
-
-
0028983492
-
Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical waveguides
-
Stimpson, D. I., J. V. Hoijer, W. T. Hsieh, C. Jou, J. Gordon, T. Theriault, R. Gamble, and J. D. Baldeschwieler. 1995. Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical waveguides. Proc. Natl. Acad. Sci. USA. 92:6379-6383.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 6379-6383
-
-
Stimpson, D.I.1
Hoijer, J.V.2
Hsieh, W.T.3
Jou, C.4
Gordon, J.5
Theriault, T.6
Gamble, R.7
Baldeschwieler, J.D.8
-
28
-
-
33846018540
-
Competitive displacement of DNA during surface hybridization
-
Bishop, J., A. Chagovetz, and S. Blair. 2007. Competitive displacement of DNA during surface hybridization. Biophys. J. 92:L10-L12.
-
(2007)
Biophys. J
, vol.92
-
-
Bishop, J.1
Chagovetz, A.2
Blair, S.3
-
29
-
-
34247185901
-
Competitive displacement: A sensitive and selective method for the detection of unlabeled molecules
-
Bishop, J., A. Chagovetz, and S. Blair. 2007. Competitive displacement: a sensitive and selective method for the detection of unlabeled molecules. Opt. Express. 15:4390-4397.
-
(2007)
Opt. Express
, vol.15
, pp. 4390-4397
-
-
Bishop, J.1
Chagovetz, A.2
Blair, S.3
-
30
-
-
22044446964
-
Matching base-pair number dependence of the kinetics of DNA-DNA hybridization studied by surface plasmon fluorescence spectroscopy
-
Tawa, K., D. Yao, and W. Knoll. 2005. Matching base-pair number dependence of the kinetics of DNA-DNA hybridization studied by surface plasmon fluorescence spectroscopy. Biosens. Bioelectron. 21:322-329.
-
(2005)
Biosens. Bioelectron
, vol.21
, pp. 322-329
-
-
Tawa, K.1
Yao, D.2
Knoll, W.3
-
31
-
-
0037620483
-
Modeling of DNA hybridization kinetics for spatially resolved biochips
-
Erickson, D., D. Li, and U. Krull. 2003. Modeling of DNA hybridization kinetics for spatially resolved biochips. Anal. Biochem. 317: 186-200.
-
(2003)
Anal. Biochem
, vol.317
, pp. 186-200
-
-
Erickson, D.1
Li, D.2
Krull, U.3
-
32
-
-
0037065343
-
Hybridization of mismatched or partially matched DNA at surfaces
-
Peterson, A. W., L. K. Wolf, and R. M. Georgiadis. 2002. Hybridization of mismatched or partially matched DNA at surfaces. J. Am. Chem. Soc. 124:14601-14607.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 14601-14607
-
-
Peterson, A.W.1
Wolf, L.K.2
Georgiadis, R.M.3
-
33
-
-
1842530707
-
Hybridization dynamics of surface immobilized DNA
-
Hagan, M. F., and A. K. Chakraborty. 2004. Hybridization dynamics of surface immobilized DNA. J. Chem. Phys. 120:4958-4968.
-
(2004)
J. Chem. Phys
, vol.120
, pp. 4958-4968
-
-
Hagan, M.F.1
Chakraborty, A.K.2
-
34
-
-
33746207804
-
Secondary structure effects on DNA hybridization kinetics: A solution versus surface comparison
-
Gao, Y., L. K. Wolf, and R. M. Georgiadis. 2006. Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison. Nucleic Acids Res. 34:3370-3377.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3370-3377
-
-
Gao, Y.1
Wolf, L.K.2
Georgiadis, R.M.3
-
35
-
-
0031848098
-
Extending the range of rate constants available from BIACORE: Interpreting mass transport-influenced binding data
-
Myszka, D. G., X. He, M. Dembo, T. A. Morton, and B. Goldstein. 1998. Extending the range of rate constants available from BIACORE: interpreting mass transport-influenced binding data. Biophys. J. 75: 583-594.
-
(1998)
Biophys. J
, vol.75
, pp. 583-594
-
-
Myszka, D.G.1
He, X.2
Dembo, M.3
Morton, T.A.4
Goldstein, B.5
-
36
-
-
33751209768
-
Two-compartment model for competitive hybridization on molecular biochips
-
Chechetkin, V. R. 2007. Two-compartment model for competitive hybridization on molecular biochips. Phys. Lett. A. 360:491-494.
-
(2007)
Phys. Lett. A
, vol.360
, pp. 491-494
-
-
Chechetkin, V.R.1
-
37
-
-
13744264180
-
Comparative study of sequence-dependent hybridization kinetics in solution and on microspheres
-
Sekar, M. M. A., W. Bloch, and P. M. S. John. 2005. Comparative study of sequence-dependent hybridization kinetics in solution and on microspheres. Nucleic Acids Res. 33:366-375.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 366-375
-
-
Sekar, M.M.A.1
Bloch, W.2
John, P.M.S.3
|