Characterization of DNA hybridization kinetics in a microfluidic flow channel

Sensors and Actuators, B: Chemical

Volumn 113, Issue 1, 2006, Pages 281-289

  Kim, Joshua Hyong Seok ^a   Marafie, Alia ^b   Jia, Xi Yu ^a   Zoval, Jim V ^b   Madou, Marc J ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b University of California at Irvine   (United States)

Author keywords

DNA hybridization kinetics; Microfluidic flow channel; PDMS; Pressure driven flow

Indexed keywords

CELL IMMOBILIZATION; CONCENTRATION (PROCESS); DNA; FLUIDIC DEVICES; FLUORESCENCE;

DNA HYBRIDIZATION KINETICS; MICROFLUIDIC FLOW CHANNEL; PDMS; PRESSURE-DRIVEN FLOW;

REACTION KINETICS;

EID: 29244448286     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2005.03.034     Document Type: Article

References (21)

1. M.J. Madou Fundamentals of Microfabrication second ed. 2002 CRC Press Boca Raton, FL
2. A.D. Sheehan, J. Quinn, S. Daly, P. Dillon, and R. O'Kennedy The development of novel miniaturized immuno-sensing devices: a review of a small technology with a large future Anal. Lett. 36 3 2003 511 537
3. M.J. Heller DNA microarray technology: devices, systems, and applications Annu. Rev. Biomed. Eng. 4 2002 129 153
4. Y. Wang, B. Vaidya, H.D. Rarquar, W. Stryjewske, R. Hammer, R. McCarley, Y. Cheng, F. Barany, and S.A. Soper Microarrays assembled in microfluidic chips fabricated from poly(methyl methacrylate) for the detection of low-abundant DNA mutations Anal. Chem. 75 2003 1130 1140
5. A.E. Nkodo, J.M. Garnier, B. Tinland, H. Ren, C. Desruisseaux, L.C. McCormick, G. Drouin, and G.W. Slater Diffusion coefficient of DNA molecules during free solution electrophoresis Electrophoresis 22 2001 2424 2432
6. S.K. Kassegne, H. Reese, D. Hodko, J.M. Yang, K. Sarkar, D. Smolko, P. Swanson, D.E. Raymond, M.J. Heller, and M.J. Madou Numerical modeling of transport and accumulation of DNA on electronically active biochips Sens. Actuators B 94 2003 81 98
7. M.J. Heller, A.H. Forster, and E. Tu Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications Electrophoresis 21 1 2000 157 164
8. D. Eisenberg, and D. Crothers Physical Chemistry with Applications to the Life Sciences 1979 The Benjamin/Cummings Publishing Company, Inc. Menlo Park, CA
9. Z.H. Fan, S. Mangru, R. Granzow, P. Heaney, W. Ho, Z. Hong, and R. Kumar Dynamic DNA hybridization on a chip using paramagnetic beads Anal. Chem. 71 1999 4851 48598
10. N.B. Adey, M. Lei, M.T. Howard, J.D. Jensen, D.A. Mayo, D.L. Butel, S.C. Coffin, T.C. Moyer, D.E. Slade, M.K. Spute, A.M. Hancock, G.T. Eisenhoffer, B.K. Dalley, and M.R. McNeely Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-μm-thick chamber Anal. Chem. 74 2002 6413 6417
11. R.H. Liu, R. Lenigk, R.L. Druyor-Sanchez, J. Yang, and P. Grodzinski Acoustic micromixer for enhancement of DNA biochip systems Anal. Chem. 75 2003 1911 1917
12. K. Pappaert, J. Vanderhoeven, P. Van Hummelen, B. Dutta, D. Clicq, G.V. Baron, and G. Desmet Enhancement of DNA micro-array analysis using a shear-driven micro-channel flow system J. Chromatogr. A 1014 2003 1 9
13. D. Erickson, X. Liu, U. Krull, and D. Li Electrokinetically controlled DNA hybridization microfluidic chip enabling rapid target analysis Anal. Chem. 76 2004 7269 7277
14. V.G. Lavich Physicochemical Hydrodynamics 1962 Prentice-Hall Englewood Cliff, NJ
15. Y. Okahata, M. Kawase, K. Niikura, F. Ohtake, H. Furusawa, and Y. Ebara Kinetic measurements of DNA hybridisation an an oligonucleotide-immobilized 27 MHz quartz crystal microbalance Anal. Chem. 70 7 1998 1288 1296
16. P.W. Atkins Physical Chemistry sixth ed. 1998 Oxford University Press Oxford/Melbourne/Tokyo
17. D. Erickson, D.Q. Li, and U.J. Krull Modeling of DNA hybridization kinetics for spatially resolved biochips Anal. Biochem. 317 2 2003 186 200
18. D.C. Duffy, H.L. Gills, J. Lin, N.F. Sheppard, and G.J. Kellogg Microfabricated centrifugal microfluidic systems: characterization and multiple enzymatic assays Anal. Chem. 71 20 1999 4669 4678
19. N.L.W. Franssen-van Hal, S. Vorst, E. Kramer, R.D. Hall, and J. Keijer Factors influencing cDNA microarray hybridization on silylated glass slides Anal. Biochem. 308 2002 5 17
20. P. Hegde, R. Qi, K. Abernathy, C. Gay, S. Dharap, R. Gaspard, J.E. Hughes, E. Snesrud, N. Lee, and J. Quackenbush A concise guide to cDNA microarray analysis BioTechniques 29 2000 548 562
21. F. Diehl, B. Beckmann, N. Kellner, N.C. Hauser, S. Diehl, and J.D. Hoheisel Manufacturing DNA microarrays from unpurified PCR products Nucleic Acids Res. 29 2001 e38