메뉴 건너뛰기




Volumn 102, Issue 3, 2012, Pages 407-416

A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand

Author keywords

[No Author keywords available]

Indexed keywords

ANKYRIN; LIGAND; MALTOSE BINDING PROTEIN;

EID: 84856763445     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.01.004     Document Type: Article
Times cited : (21)

References (48)
  • 1
    • 8844263869 scopus 로고    scopus 로고
    • A molecular switch created by in vitro recombination of nonhomologous genes
    • DOI 10.1016/j.chembiol.2004.08.020, PII S1074552104002765
    • G. Guntas, S.F. Mitchell, and M. Ostermeier A molecular switch created by in vitro recombination of nonhomologous genes Chem. Biol. 11 2004 1483 1487 (Pubitemid 39527274)
    • (2004) Chemistry and Biology , vol.11 , Issue.11 , pp. 1483-1487
    • Guntas, G.1    Mitchell, S.F.2    Ostermeier, M.3
  • 3
    • 80053052797 scopus 로고    scopus 로고
    • Protein switches identified from diverse insertion libraries created using S1 nuclease digestion of supercoiled-form plasmid DNA
    • J. Tullman, and G. Guntas M. Ostermeier Protein switches identified from diverse insertion libraries created using S1 nuclease digestion of supercoiled-form plasmid DNA Biotechnol. Bioeng. 108 2011 2535 2543
    • (2011) Biotechnol. Bioeng. , vol.108 , pp. 2535-2543
    • Tullman, J.1    Guntas, G.2    Ostermeier, M.3
  • 6
    • 77954639937 scopus 로고    scopus 로고
    • Knowledge-based design of reagentless fluorescent biosensors from a designed ankyrin repeat protein
    • E. Brient-Litzler, A. Plückthun, and H. Bedouelle Knowledge-based design of reagentless fluorescent biosensors from a designed ankyrin repeat protein Protein Eng. Des. Sel. 23 2010 229 241
    • (2010) Protein Eng. Des. Sel. , vol.23 , pp. 229-241
    • Brient-Litzler, E.1    Plückthun, A.2    Bedouelle, H.3
  • 8
    • 80054856259 scopus 로고    scopus 로고
    • DARPins and other repeat protein scaffolds: Advances in engineering and applications
    • Y.L. Boersma, and A. Pluckthun DARPins and other repeat protein scaffolds: advances in engineering and applications Curr. Opin. Biotechnol. 22 2011 849 857
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 849-857
    • Boersma, Y.L.1    Pluckthun, A.2
  • 11
    • 67651094146 scopus 로고    scopus 로고
    • Selection and characterization of DARPins specific for the neurotensin receptor 1
    • P. Milovnik, and D. Ferrari A. Plückthun Selection and characterization of DARPins specific for the neurotensin receptor 1 Protein Eng. Des. Sel. 22 2009 357 366
    • (2009) Protein Eng. Des. Sel. , vol.22 , pp. 357-366
    • Milovnik, P.1    Ferrari, D.2    Plückthun, A.3
  • 12
    • 33646267001 scopus 로고    scopus 로고
    • Rapid selection of specific MAP kinase-binders from designed ankyrin repeat protein libraries
    • P. Amstutz, and H. Koch A. Plückthun Rapid selection of specific MAP kinase-binders from designed ankyrin repeat protein libraries Protein Eng. Des. Sel. 19 2006 219 229
    • (2006) Protein Eng. Des. Sel. , vol.19 , pp. 219-229
    • Amstutz, P.1    Koch, H.2    Plückthun, A.3
  • 14
    • 53049085400 scopus 로고    scopus 로고
    • Chaperone-assisted crystallography with DARPins
    • G. Sennhauser, and M.G. Grütter Chaperone-assisted crystallography with DARPins Structure 16 2008 1443 1453
    • (2008) Structure , vol.16 , pp. 1443-1453
    • Sennhauser, G.1    Grütter, M.G.2
  • 17
    • 0032479179 scopus 로고    scopus 로고
    • Anatomy of hot spots in protein interfaces
    • DOI 10.1006/jmbi.1998.1843
    • A.A. Bogan, and K.S. Thorn Anatomy of hot spots in protein interfaces J. Mol. Biol. 280 1998 1 9 (Pubitemid 28312802)
    • (1998) Journal of Molecular Biology , vol.280 , Issue.1 , pp. 1-9
    • Bogan, A.A.1    Thorn, K.S.2
  • 18
    • 34548779127 scopus 로고    scopus 로고
    • Hot spots - A review of the protein-protein interface determinant amino-acid residues
    • DOI 10.1002/prot.21396
    • I.S. Moreira, P.A. Fernandes, and M.J. Ramos Hot spots-a review of the protein-protein interface determinant amino-acid residues Proteins 68 2007 803 812 (Pubitemid 47434705)
    • (2007) Proteins: Structure, Function and Genetics , vol.68 , Issue.4 , pp. 803-812
    • Moreira, I.S.1    Fernandes, P.A.2    Ramos, M.J.3
  • 19
    • 0035066602 scopus 로고    scopus 로고
    • ASEdb: A database of alanine mutations and their effects on the free energy of binding in protein interactions
    • K.S. Thorn, and A.A. Bogan ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions Bioinformatics 17 2001 284 285 (Pubitemid 32288219)
    • (2001) Bioinformatics , vol.17 , Issue.3 , pp. 284-285
    • Thorn, K.S.1    Bogan, A.A.2
  • 20
    • 0018101150 scopus 로고
    • Models for the specific adhesion of cells to cells
    • G.I. Bell Models for the specific adhesion of cells to cells Science 200 1978 618 627
    • (1978) Science , vol.200 , pp. 618-627
    • Bell, G.I.1
  • 21
    • 34249936024 scopus 로고    scopus 로고
    • Forces and bond dynamics in cell adhesion
    • DOI 10.1126/science.1137592
    • E.A. Evans, and D.A. Calderwood Forces and bond dynamics in cell adhesion Science 316 2007 1148 1153 (Pubitemid 46877469)
    • (2007) Science , vol.316 , Issue.5828 , pp. 1148-1153
    • Evans, E.A.1    Calderwood, D.A.2
  • 22
    • 79958126320 scopus 로고    scopus 로고
    • Single-molecule binding of CD44 to fibrin versus P-selectin predicts their distinct shear-dependent interactions in cancer
    • P.S. Raman, and C.S. Alves K. Konstantopoulos Single-molecule binding of CD44 to fibrin versus P-selectin predicts their distinct shear-dependent interactions in cancer J. Cell Sci. 124 2011 1903 1910
    • (2011) J. Cell Sci. , vol.124 , pp. 1903-1910
    • Raman, P.S.1    Alves, C.S.2    Konstantopoulos, K.3
  • 23
    • 3042855281 scopus 로고    scopus 로고
    • Distinct kinetic and mechanical properties govern selectin-leukocyte interactions
    • DOI 10.1242/jcs.01088
    • W.D. Hanley, D. Wirtz, and K. Konstantopoulos Distinct kinetic and mechanical properties govern selectin-leukocyte interactions J. Cell Sci. 117 2004 2503 2511 (Pubitemid 38877846)
    • (2004) Journal of Cell Science , vol.117 , Issue.12 , pp. 2503-2511
    • Hanley, W.D.1    Wirtz, D.2    Konstantopoulos, K.3
  • 25
    • 44449087047 scopus 로고    scopus 로고
    • Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
    • DOI 10.1038/nmeth.1218, PII NMETH.1218
    • K.C. Neuman, and A. Nagy Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy Nat. Methods 5 2008 491 505 (Pubitemid 351761756)
    • (2008) Nature Methods , vol.5 , Issue.6 , pp. 491-505
    • Neuman, K.C.1    Nagy, A.2
  • 29
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • W.L. Jorgensen, and J. Chandrasekhar M.L. Klein Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79 1983 926 935
    • (1983) J. Chem. Phys. , vol.79 , pp. 926-935
    • Jorgensen, W.L.1    Chandrasekhar, J.2    Klein, M.L.3
  • 30
    • 33846823909 scopus 로고
    • Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems
    • T. Darden, D. York, and L. Pedersen Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems J. Chem. Phys. 98 1993 10089 10092
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 31
    • 4243114736 scopus 로고
    • Molecular-dynamics study of a 3-dimensional one-component model for distortive phase-transitions
    • T. Schneider, and E. Stoll Molecular-dynamics study of a 3-dimensional one-component model for distortive phase-transitions Phys. Rev. B 17 1978 1302 1322
    • (1978) Phys. Rev. B , vol.17 , pp. 1302-1322
    • Schneider, T.1    Stoll, E.2
  • 32
    • 36449007836 scopus 로고
    • Constant-pressure molecular-dynamics simulation-the Langevin piston method
    • S.E. Feller, and Y.H. Zhang B.R. Brooks Constant-pressure molecular-dynamics simulation-the Langevin piston method J. Chem. Phys. 103 1995 4613 4621
    • (1995) J. Chem. Phys. , vol.103 , pp. 4613-4621
    • Feller, S.E.1    Zhang, Y.H.2    Brooks, B.R.3
  • 34
    • 0037653696 scopus 로고    scopus 로고
    • Direct observation of catch bonds involving cell-adhesion molecules
    • DOI 10.1038/nature01605
    • B.T. Marshall, and M. Long C. Zhu Direct observation of catch bonds involving cell-adhesion molecules Nature 423 2003 190 193 (Pubitemid 36569544)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 190-193
    • Marshall, B.T.1    Long, M.2    Piper, J.W.3    Yago, T.4    McEver, R.P.5    Zhu, C.6
  • 35
    • 57449120656 scopus 로고    scopus 로고
    • Chapter 15: Live-cell single-molecule force spectroscopy
    • T.M. Dobrowsky, and P. Panorchan D. Wirtz Chapter 15: Live-cell single-molecule force spectroscopy Methods Cell Biol. 89 2008 411 432
    • (2008) Methods Cell Biol. , vol.89 , pp. 411-432
    • Dobrowsky, T.M.1    Panorchan, P.2    Wirtz, D.3
  • 37
    • 0030478020 scopus 로고    scopus 로고
    • Kinetic analysis of biosensor data: Elementary tests for self-consistency
    • DOI 10.1016/S0968-0004(96)20025-8, PII S0968000496200258
    • P. Schuck, and A.P. Minton Kinetic analysis of biosensor data: elementary tests for self-consistency Trends Biochem. Sci. 21 1996 458 460 (Pubitemid 27018811)
    • (1996) Trends in Biochemical Sciences , vol.21 , Issue.12 , pp. 458-460
    • Schuck, P.1    Minton, A.P.2
  • 38
    • 73249137770 scopus 로고    scopus 로고
    • Grading the commercial optical biosensor literature-Class of 2008: 'The Mighty Binders
    • R.L. Rich, and D.G. Myszka Grading the commercial optical biosensor literature-Class of 2008: 'The Mighty Binders' J. Mol. Recognit. 23 2010 1 64
    • (2010) J. Mol. Recognit. , vol.23 , pp. 1-64
    • Rich, R.L.1    Myszka, D.G.2
  • 39
    • 59449098391 scopus 로고    scopus 로고
    • Biomolecular characterization of CD44-fibrin(ogen) binding: Distinct molecular requirements mediate binding of standard and variant isoforms of CD44 to immobilized fibrin(ogen)
    • C.S. Alves, and S. Yakovlev K. Konstantopoulos Biomolecular characterization of CD44-fibrin(ogen) binding: distinct molecular requirements mediate binding of standard and variant isoforms of CD44 to immobilized fibrin(ogen) J. Biol. Chem. 284 2009 1177 1189
    • (2009) J. Biol. Chem. , vol.284 , pp. 1177-1189
    • Alves, C.S.1    Yakovlev, S.2    Konstantopoulos, K.3
  • 40
    • 47049127247 scopus 로고    scopus 로고
    • Carcinoembryonic antigen and CD44 variant isoforms cooperate to mediate colon carcinoma cell adhesion to E-and L-selectin in shear flow
    • S.N. Thomas, and F. Zhu K. Konstantopoulos Carcinoembryonic antigen and CD44 variant isoforms cooperate to mediate colon carcinoma cell adhesion to E-and L-selectin in shear flow J. Biol. Chem. 283 2008 15647 15655
    • (2008) J. Biol. Chem. , vol.283 , pp. 15647-15655
    • Thomas, S.N.1    Zhu, F.2    Konstantopoulos, K.3
  • 41
    • 0842280615 scopus 로고    scopus 로고
    • The role of the CD44 transmembrane and cytoplasmic domains in co-ordinating adhesive and signalling events
    • DOI 10.1242/jcs.00954
    • R.F. Thorne, J.W. Legg, and C.M. Isacke The role of the CD44 transmembrane and cytoplasmic domains in co-ordinating adhesive and signaling events J. Cell Sci. 117 2004 373 380 (Pubitemid 38181198)
    • (2004) Journal of Cell Science , vol.117 , Issue.3 , pp. 373-380
    • Thorne, R.F.1    Legg, J.W.2    Isacke, C.M.3
  • 42
    • 0030758073 scopus 로고    scopus 로고
    • Two modes of ligand binding in maltose-binding protein of Escherichia coli: Functional significance in active transport
    • DOI 10.1074/jbc.272.28.17615
    • J.A. Hall, and A.K. Ganesan H. Nikaido Two modes of ligand binding in maltose-binding protein of Escherichia coli. Functional significance in active transport J. Biol. Chem. 272 1997 17615 17622 (Pubitemid 27311197)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.28 , pp. 17615-17622
    • Hall, J.A.1    Ganesan, A.K.2    Chen, J.3    Nikaido, H.4
  • 43
    • 0035144536 scopus 로고    scopus 로고
    • A microcantilever device to assess the effect of force on the lifetime of selectin-carbohydrate bonds
    • D.F. Tees, R.E. Waugh, and D.A. Hammer A microcantilever device to assess the effect of force on the lifetime of selectin-carbohydrate bonds Biophys. J. 80 2001 668 682 (Pubitemid 32128321)
    • (2001) Biophysical Journal , vol.80 , Issue.2 , pp. 668-682
    • Tees, D.F.J.1    Waugh, R.E.2    Hammer, D.A.3
  • 44
    • 0031682733 scopus 로고    scopus 로고
    • Measuring two-dimensional receptor-ligand binding kinetics by micropipette
    • S.E. Chesla, P. Selvaraj, and C. Zhu Measuring two-dimensional receptor-ligand binding kinetics by micropipette Biophys. J. 75 1998 1553 1572 (Pubitemid 28397625)
    • (1998) Biophysical Journal , vol.75 , Issue.3 , pp. 1553-1572
    • Chesla, S.E.1    Selvaraj, P.2    Zhu, C.3
  • 45
    • 79960692993 scopus 로고    scopus 로고
    • Quantitation of protein-protein interactions by thermal stability shift analysis
    • C.J. Layton, and H.W. Hellinga Quantitation of protein-protein interactions by thermal stability shift analysis Protein Sci. 20 2011 1439 1450
    • (2011) Protein Sci. , vol.20 , pp. 1439-1450
    • Layton, C.J.1    Hellinga, H.W.2
  • 46
    • 79960665829 scopus 로고    scopus 로고
    • Integration of cell-free protein coexpression with an enzyme-linked immunosorbent assay enables rapid analysis of protein-protein interactions directly from DNA
    • C.J. Layton, and H.W. Hellinga Integration of cell-free protein coexpression with an enzyme-linked immunosorbent assay enables rapid analysis of protein-protein interactions directly from DNA Protein Sci. 20 2011 1432 1438
    • (2011) Protein Sci. , vol.20 , pp. 1432-1438
    • Layton, C.J.1    Hellinga, H.W.2
  • 47
    • 11844249426 scopus 로고    scopus 로고
    • Hot regions in protein-protein interactions: The organization and contribution of structurally conserved hot spot residues
    • DOI 10.1016/j.jmb.2004.10.077, PII S0022283604013981
    • O. Keskin, B. Ma, and R. Nussinov Hot regions in protein-protein interactions: the organization and contribution of structurally conserved hot spot residues J. Mol. Biol. 345 2005 1281 1294 (Pubitemid 40092239)
    • (2005) Journal of Molecular Biology , vol.345 , Issue.5 , pp. 1281-1294
    • Keskin, O.1    Ma, B.2    Nussinov, R.3
  • 48
    • 0035426369 scopus 로고    scopus 로고
    • Molecular properties in cell adhesion: A physical and engineering perspective
    • DOI 10.1016/S0167-7799(01)01692-4, PII S0167779901016924
    • C.E. Orsello, D.A. Lauffenburger, and D.A. Hammer Molecular properties in cell adhesion: a physical and engineering perspective Trends Biotechnol. 19 2001 310 316 (Pubitemid 32635189)
    • (2001) Trends in Biotechnology , vol.19 , Issue.8 , pp. 310-316
    • Orsello, C.E.1    Lauffenburger, D.A.2    Hammer, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.