Dissecting protein-protein recognition sites

Proteins: Structure, Function and Genetics

Volumn 47, Issue 3, 2002, Pages 334-343

  Chakrabarti, Pinak ^a   Janin, Joël ^b  

^a BOSE INSTITUTE   (India)

^b LABORATOIRE D ENZYMOLOGIE ET BIOCHIMIE STRUCTURALES   (France)

Author keywords

Amino acid composition; Interfaces; Molecular recognition; Protein surface; Protein protein interaction; Residue clusters

Indexed keywords

AMINO ACID COMPOSITION; ARTICLE; COMPLEX FORMATION; GEOMETRY; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SURFACE PROPERTY;

AMINO ACIDS; ANIMALS; BINDING SITES; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS;

EID: 0037093645     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10085     Document Type: Article

References (41)

1. The protein data bank
2. Principles of protein-protein recognition
3. The structure of protein-protein recognition sites
4. Shape complementarity at protein/protein interfaces
5. A role for surface hydrophobicity in protein-protein recognition
6. Principles of protein-protein recognition from structure to thermodynamics
7. Protein-protein recognition
8. Principles of protein-protein interactions
9. Anaysis of protein-protein interaction sites using surface patches
10. Hydrogen bonds and salt bridges across protein-protein interfaces
11. Studies of protein-protein interfaces: A staistical analysis of the hydrophobic effect
12. The atomic structure of protein-protein recognition sites
13. Examination of shape complementarity in docking of unbound proteins
14. Electrostatic aspects of protein-protein interaction
15. Surface, subunit interfaces and interior of oligomeric proteins
16. Distribution and complementarity of hydropathy in multisubunit proteins
17. Domain repertoires as a tool to derive protein recognition rules
18. Prediction of protein interaction sites from sequence profile and residue neighbour list
19. The interpretation of protein structures: Estimation of static accessibility
20. The ornithodorin-thrombin crystal structure, a key to the TAP enigma?
21. Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II Crystallographic refinement at 1.9 A resolution
22. The crystal structure of the complex of blood coagulation factor VIIA with soluble tissue factor
23. Substrate mimicry in the active center of mammalian α-amylase: Structural analysis of an enzyme-inhibitor complex
24. Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2
25. The three-dimensional structure of a T-cell antigen receptor Vα-Vβ heterodimer reveals a novel rearrangement of the Vβ domain
26. An investigation of protein subunit and domain interfaces
27. Structural comparison of two serine proteinase-protein inhibitor complexes, Eglin C-subtilisin Carlsberg and CI 2-subtilisin novo
28. SURFNET: A program for visualizing molecular surfaces, cavities and intermolecular interactions
29. Interior and surface of monomeric proteins
30. Structural features of protein-nucleic acid recognition sites
31. Geometric features in protein-protein and protein-DNA recognition
32. Residue frequencies and pairing preferences at protein-protein interfaces
33. Residue frequencies and pairing preferences at protein-protein interfaces
34. Anatomy of hot spots in protein interfaces
35. ASEdb: A database of alanine mutations and their effect on the free energy of binding in protein interaction
36. Systematic mutational analyses of protein-protein interfaces
37. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons