Directed evolution of protein switches and their application to the creation of ligand-binding proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 32, 2005, Pages 11224-11229

  Guntas, Gurkan ^a   Mansell, Thomas J ^a   Kim, Jin Ryoun ^a   Ostermeier, Marc ^a  

^a Whiting School of Engineering   (United States)

Author keywords

lactamase; Allostery; Maltose binding protein

Indexed keywords

AMPICILLIN; BETA LACTAM ANTIBIOTIC; BETA LACTAMASE; CARBENICILLIN; CEFALOTIN; CEFAZOLIN; CEFOTAXIME; MALTOSE; MALTOSE BINDING PROTEIN; NITROCEFIN; SUCROSE;

ALLOSTERISM; ARTICLE; CATALYSIS; DIRECTED MOLECULAR EVOLUTION; DISSOCIATION CONSTANT; ESCHERICHIA COLI; GEL PERMEATION CHROMATOGRAPHY; GENETIC RECOMBINATION; GENETIC SELECTION; HYDROLYSIS; LIGAND BINDING; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; PENICILLIN RESISTANCE; PRIORITY JOURNAL; STAPHYLOCOCCUS AUREUS;

ALLOSTERIC REGULATION; BETA-LACTAMASES; CARRIER PROTEINS; CATALYSIS; DIRECTED MOLECULAR EVOLUTION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENES, SWITCH; LIGANDS; PROTEIN BINDING; PROTEIN ENGINEERING; SUCROSE;

ESCHERICHIA COLI;

EID: 23844465160     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0502673102     Document Type: Article

References (41)

1. Buskirk, A. R. & Liu, D. R. (2005) Chem. Biol. 12, 151-161.
2. Kaern, M., Blake, W. J. & Collins, J. J. (2003) Annu. Rev. Biomed. Eng. 5, 179-206.
3. Vuyisich, M. & Beal, P. A. (2002) Chem. Biol. 9, 907-913.
4. Baird, G. S., Zacharias, D. A. & Tsien, R. Y. (1999) Proc. Natl. Acad. Sci. USA 96, 11241-11246.
5. Doi, N. & Yanagawa, H. (1999) FEBS Lett. 457, 1-4.
6. Tucker, C. L. & Fields, S. (2001) Nat. Biotechnol. 19, 1042-1046.
7. Dueber, J. E., Yeh, B. J., Chak, K. & Lim, W. A. (2003) Science 301, 1904-1908.
8. Radley, T. L., Markowska, A. I., Bettinger, B. T., Ha, J. H. & Loh, S. N. (2003) J. Mol. Biol. 332, 529-536.
9. Guntas, G. & Ostermeier, M. (2004) J. Mol. Biol. 336, 263-273.
10. Gryczynski, U. & Schleif, R. (2004) Proteins 57, 9-11.
11. Buskirk, A. R., Ong, Y. C., Gartner, Z. J. & Liu, D. R. (2004) Proc. Natl. Acad. Sci. USA 101, 10505-10510.
12. Guntas, G., Mitchell, S. F. & Ostermeier, M. (2004) Chem. Biol. 11, 1483-1487.
13. Skretas, G. & Wood, D. W. (2005) Protein Sci. 14, 523-532.
14. Horton, R. M., Hunt, H. D., Ho, S. N., Pullen, J. K. & Pease, L. R. (1989) Gene 77, 61-68.
15. Quiocho, F. A., Spurlino, J. C. & Rodseth, L. E. (1997) Structure (London) 5, 997-1015.
16. Osuna, J., Pérez-Blancas, A. & Soberón, X. (2002) Protein Eng. 15, 463-470.
17. Hayes, F., Hallet, B. & Cao, Y. (1997) J. Biol. Chem. 272, 28833-28836.
18. Osuna, J., Yanez, J., Soberon, X. & Gaytan, P. (2004) Nucleic Acids Res. 32, e136.
19. Waley, S. G. (1991) Biochem. J. 279, 87-94.
20. Citri, N., Samuni, A. & Zyk, N. (1976) Proc. Natl. Acad. Sci. USA 73, 1048-1052.
21. Chen, C. C., Rahil, J., Pratt, R. F. & Herzberg, O. (1993) J. Mol. Biol. 234, 165-178.
22. Strynadka, N. C., Adachi, H., Jensen, S. E., Johns, K., Sielecki, A., Betzel, C., Sutoh, K. & James, M. N. (1992) Nature 359, 700-705.
23. Chen, C. C. & Herzberg, O. (1999) Protein Eng. 12, 573-579.
24. Hall, J. A., Gehring, K. & Nikaido, H. (1997) J. Biol. Chem. 272, 17605-17609.
25. Bowden, G. A. & Georgiou, G. (1990) J. Biol. Chem. 265, 16760-16766.
26. Hall, J. A., Ganesan, A. K., Chen, J. & Nikaido, H. (1997) J. Biol. Chem. 272, 17615-17622.
27. Looger, L. L., Dwyer, M. A., Smith, J. J. & Hellinga, H. W. (2003) Nature 423, 185-190.
28. Marvin, J. S. & Hellinga, H. W. (2001) Proc. Natl. Acad. Sci. USA 98, 4955-4960.
29. Sintchak, M. D., Arjara, G., Kellogg, B. A., Stubbe, J. & Drennan, C. L. (2002) Nat. Struct. Biol. 9, 293-300.
30. Ludwig, M. L. & Matthews, R. G. (2002) Nat. Struct. Biol. 9, 236-238.
31. Gerhart, J. C. & Pardee, A. B. (1962) J. Biol. Chem. 237, 891-896.
32. West, J. M., Tsuruta, H. & Kantrowitz, E. R. (2004) J. Biol. Chem. 279, 945-951.
33. Ortigosa, A. D., Kimmel, J. L. & Reinhart, G. D. (2004) Biochemistry 43, 577-586.
34. Luque, I. & Freire, E. (2000) Proteins 4, Suppl., 63-71.
35. Pan, H., Lee, J. C. & Hilser, V. J. (2000) Proc. Natl. Acad. Sci. USA 97, 12020-12025.
36. Yu, E. W. & Koshland, D. E., Jr. (2001) Proc. Natl. Acad. Sci. USA 98, 9517-9520.
37. Suel, G. M., Lockless, S. W., Wall, M. A. & Ranganathan, R. (2003) Nat. Struct. Biol. 10, 59-69.
38. Gunasekaran, K., Ma, B. & Nussinov, R. (2004) Proteins 57, 433-443.
39. Evenas, J., Tugarinov, V., Skrynnikov, N. R., Goto, N. K., Muhandiram, R. & Kay, L. E. (2001) J. Mol. Biol. 309, 961-974.
40. Krishna, M. M. & Englander, S. W. (2005) Proc. Natl. Acad. Sci. USA 102, 1053-1058.
41. Kobayashi, H., Kaern, M., Araki, M., Chung, K., Gardner, T. S., Cantor, C. R. & Collins, J. J. (2004) Proc. Natl. Acad. Sci. USA 101, 8414-8419.