메뉴 건너뛰기




Volumn 6, Issue 1, 2012, Pages 81-93

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

Author keywords

assembly; halophile; hypersaline; metagenome; Nanohaloarchaea

Indexed keywords

ABUNDANCE; AMINO ACID; BACTERIUM; CHEMICAL COMPOSITION; FRACTIONATION; GENETIC ANALYSIS; GENOME; GENOMICS; HYPERSALINE ENVIRONMENT; MICROBIAL COMMUNITY; PHYLOGENETICS; PROTEIN; VISUALIZATION;

EID: 84355162254     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.78     Document Type: Article
Times cited : (271)

References (88)
  • 1
    • 19044401068 scopus 로고    scopus 로고
    • Community genomics in microbial ecology and evolution
    • DOI 10.1038/nrmicro1157
    • Allen EE, Banfield JF. (2005). Community genomics in microbial ecology and evolution. Nat Rev Microbiol 3: 489-498. (Pubitemid 40716175)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.6 , pp. 489-498
    • Allen, E.E.1    Banfield, J.F.2
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 5
    • 33845898858 scopus 로고    scopus 로고
    • Lineages of acidophilic archaea revealed by community genomic analysis
    • DOI 10.1126/science.1132690
    • Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE et al. (2006). Lineages of acidophilic archaea revealed by community genomic analysis. Science 314: 1933-1935. (Pubitemid 46026116)
    • (2006) Science , vol.314 , Issue.5807 , pp. 1933-1935
    • Baker, B.J.1    Tyson, G.W.2    Webb, R.I.3    Flanagan, J.4    Hugenholtz, P.5    Allen, E.E.6    Banfield, J.F.7
  • 6
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • DOI 10.1016/j.mimet.2003.08.009
    • Baker GC, Smith JJ, Cowan DA. (2003). Review and reanalysis of domain-specific 16S primers. J Microbiol Methods 55: 541-555. (Pubitemid 37357207)
    • (2003) Journal of Microbiological Methods , vol.55 , Issue.3 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 9
    • 77952669807 scopus 로고    scopus 로고
    • Halophilic adaptations of proteins
    • Siddiqui KS, Thomas T (eds Nova Biomedical Books: New York
    • Bolhuis A, Kwan D, Thomas JR. (2008). Halophilic adaptations of proteins. In: Siddiqui KS, Thomas T (eds). Protein Adaptation in Extremophiles. Nova Biomedical Books: New York, pp 71-104.
    • (2008) Protein Adaptation in Extremophiles , pp. 71-104
    • Bolhuis, A.1    Kwan, D.2    Thomas, J.R.3
  • 10
    • 33747334086 scopus 로고    scopus 로고
    • The genome of the square archaeon Haloquadratum walsbyi: Life at the limits of water activity
    • Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F et al. (2006). The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. BMC Genomics 7: 169.
    • (2006) BMC Genomics , vol.7 , pp. 169
    • Bolhuis, H.1    Palm, P.2    Wende, A.3    Falb, M.4    Rampp, M.5    Rodriguez-Valera, F.6
  • 11
    • 52049123288 scopus 로고    scopus 로고
    • The basal phylogenetic position of Nanoarchaeum equitans (Nanoarchaeota
    • Branciamore S, Gallori E, Di Giulio M. (2008). The basal phylogenetic position of Nanoarchaeum equitans (Nanoarchaeota). Front Biosci 13: 6886-6892.
    • (2008) Front Biosci , vol.13 , pp. 6886-6892
    • Branciamore, S.1    Gallori, E.2    Di Giulio, M.3
  • 12
    • 0036137155 scopus 로고    scopus 로고
    • Eubacterial phylogeny based on translational apparatus proteins
    • DOI 10.1016/S0168-9525(01)02522-7, PII S0168952501025227
    • Brochier C, Bapteste E, Moreira D, Philippe H. (2002). Eubacterial phylogeny based on translational apparatus proteins. Trends Genet 18: 1-5. (Pubitemid 34031845)
    • (2002) Trends in Genetics , vol.18 , Issue.1 , pp. 1-5
    • Brochier, C.1    Bapteste, E.2    Moreira, D.3    Philippe, H.4
  • 13
    • 0031792327 scopus 로고    scopus 로고
    • Quantitative measure of small-subunit rRNA gene sequences of the kingdom Korarchaeota
    • Brunk CF, Eis N. (1998). Quantitative measure of smallsubunit rRNA gene sequences of the kingdom korarchaeota. Appl Environ Microbiol 64: 5064-5066. (Pubitemid 28557889)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.12 , pp. 5064-5066
    • Brunk, C.F.1    Eis, N.2
  • 14
    • 4444305820 scopus 로고    scopus 로고
    • Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable
    • DOI 10.1128/AEM.70.9.5258-5265.2004
    • Burns DG, Camakaris HM, Janssen PH, Dyall-Smith ML. (2004). Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Appl Environ Microbiol 70: 5258-5265. (Pubitemid 39279598)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.9 , pp. 5258-5265
    • Burns, D.G.1    Camakaris, H.M.2    Janssen, P.H.3    Dyall-Smith, M.L.4
  • 15
    • 50649122735 scopus 로고    scopus 로고
    • Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments
    • Casanueva A, Galada N, Baker GC, Grant WD, Heaphy S, Jones B et al. (2008). Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments. Extremophiles 12: 651-656.
    • (2008) Extremophiles , vol.12 , pp. 651-656
    • Casanueva, A.1    Galada, N.2    Baker, G.C.3    Grant, W.D.4    Heaphy, S.5    Jones, B.6
  • 16
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • DOI 10.1126/science.1123061
    • Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. (2006). Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283-1287. (Pubitemid 43334717)
    • (2006) Science , vol.311 , Issue.5765 , pp. 1283-1287
    • Ciccarelli, F.D.1    Doerks, T.2    Von Mering, C.3    Creevey, C.J.4    Snel, B.5    Bork, P.6
  • 19
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims H, Bruhl A, Amann R, Schleifer KH, Wagner M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444. (Pubitemid 29485930)
    • (1999) Systematic and Applied Microbiology , vol.22 , Issue.3 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 21
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong EF. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci USA 89: 5685-5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 22
    • 1642353076 scopus 로고    scopus 로고
    • Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile
    • DOI 10.1016/j.femsec.2003.12.013, PII S0168649604000224
    • Demergasso C, Casamayor EO, Chong G, Galleguillos P, Escudero L, Pedros-Alio C. (2004). Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile. FEMS Microbiol Ecol 48: 57-69. (Pubitemid 38393776)
    • (2004) FEMS Microbiology Ecology , vol.48 , Issue.1 , pp. 57-69
    • Demergasso, C.1    Casamayor, E.O.2    Chong, G.3    Galleguillos, P.4    Escudero, L.5    Pedros-Alio, C.6
  • 23
    • 0033855457 scopus 로고    scopus 로고
    • Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
    • DOI 10.1128/AEM.66.8.3603-3607.2000
    • Fuchs BM, Glockner FO, Wulf J, Amann R. (2000). Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl Environ Microbiol 66: 3603-3607. (Pubitemid 30624603)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.8 , pp. 3603-3607
    • Fuchs, B.M.1    Glockner, F.O.2    Wulf, J.3    Amann, R.4
  • 25
    • 59649123898 scopus 로고    scopus 로고
    • Assessment of alkaliphilic haloarchaeal diversity in Sua pan evaporator ponds in Botswana
    • Gareeb A, Setani M. (2009). Assessment of alkaliphilic haloarchaeal diversity in Sua pan evaporator ponds in Botswana. Afr J Biotechnol 8: 259-267.
    • (2009) Afr J Biotechnol , vol.8 , pp. 259-267
    • Gareeb, A.1    Setani, M.2
  • 28
    • 0033136102 scopus 로고    scopus 로고
    • Novel archaeal phylotypes from an East African alkaline saltern
    • DOI 10.1007/s007920050109
    • Grant S, Grant WD, Jones BE, Kato C, Li L. (1999). Novel archaeal phylotypes from an East African alkaline saltern. Extremophiles 3: 139-145. (Pubitemid 29250569)
    • (1999) Extremophiles , vol.3 , Issue.2 , pp. 139-145
    • Grant, S.1    Grant, W.D.2    Jones, B.E.3    Kato, C.4    Li, L.5
  • 29
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 31
    • 10344254308 scopus 로고    scopus 로고
    • Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
    • DOI 10.1038/nature03149
    • Hrdy I, Hirt RP, Dolezal P, Bardonova L, Foster PG, Tachezy J et al. (2004). Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I. Nature 432: 618-622. (Pubitemid 39626267)
    • (2004) Nature , vol.432 , Issue.7017 , pp. 618-622
    • Hrdy, I.1    Hirt, R.P.2    Dolezal, P.3    Bardonova, L.4    Foster, P.G.5    Tachezy, J.6    Embley, T.M.7
  • 32
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • DOI 10.1038/417063a
    • Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. (2002). A new phylum of archaea represented by a nanosized hyperthermophilic symbiont. Nature 417: 63-67. (Pubitemid 34498815)
    • (2002) Nature , vol.417 , Issue.6884 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 33
    • 52949115612 scopus 로고    scopus 로고
    • Microbiology: Metagenomics
    • Hugenholtz P, Tyson GW. (2008). Microbiology: metagenomics. Nature 455: 481-483.
    • (2008) Nature , vol.455 , pp. 481-483
    • Hugenholtz, P.1    Tyson, G.W.2
  • 35
    • 0031022623 scopus 로고    scopus 로고
    • Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina
    • Ihara K, Watanabe S, Tamura T. (1997). Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina. Int J Syst Bacteriol 47: 73-77. (Pubitemid 27027225)
    • (1997) International Journal of Systematic Bacteriology , vol.47 , Issue.1 , pp. 73-77
    • Ihara, K.1    Watanabe, S.2    Tamura, T.3
  • 36
    • 33745145824 scopus 로고    scopus 로고
    • Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China
    • DOI 10.1128/AEM.02869-05
    • Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW. (2006). Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China. Appl Environ Microbiol 72: 3832-3845. (Pubitemid 43894842)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.6 , pp. 3832-3845
    • Jiang, H.1    Dong, H.2    Zhang, G.3    Yu, B.4    Chapman, L.R.5    Fields, M.W.6
  • 37
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. (2004). TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4: 18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 38
    • 0034074410 scopus 로고    scopus 로고
    • RRNA operon copy number reflects ecological strategies of bacteria
    • DOI 10.1128/AEM.66.4.1328-1333.2000
    • Klappenbach JA, Dunbar JM, Schmidt TM. (2000). rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 66: 1328-1333. (Pubitemid 30185597)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.4 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 39
    • 0021829125 scopus 로고
    • Glycogen in Methanolobus and Methanococcus
    • DOI 10.1016/0378-1097(85)90093-X
    • König H, Nusser E, Stetter KO. (1985). Glycogen in methanolobus and methanococcus. FEMS Microbiol Lett 28: 265-269. (Pubitemid 15014060)
    • (1985) FEMS Microbiology Letters , vol.28 , Issue.3 , pp. 265-269
    • Konig, H.1    Nusser, E.2    Stetter, K.O.3
  • 40
    • 0020463405 scopus 로고
    • Glycogen in thermoacidophilic archaebacteria of the genera Sulfolobus, Thermoproteus, Desulfurococcus and Thermococcus
    • DOI 10.1007/BF00413378
    • König H, Skorko R, Zillig W, Reiter W-D. (1982). Glycogen in thermoacidophilic archaebacteria of the genera Sulfolobus, Thermoproteus, Desulfurococcus, and Thermococcus. Arch Microbiol 132: 297-303. (Pubitemid 13220180)
    • (1982) Archives of Microbiology , vol.132 , Issue.4 , pp. 297-303
    • Konig, H.1    Skorko, R.2    Zillig, W.3    Reiter, W.D.4
  • 41
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M (eds Wiley: Chichester; New York
    • Lane DJ. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. Wiley: Chichester; New York, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 42
    • 35748983784 scopus 로고    scopus 로고
    • Single-cell genomic sequencing using Multiple Displacement Amplification
    • DOI 10.1016/j.mib.2007.08.005, PII S1369527407001191, Antimicrobials/Genomics
    • Lasken RS. (2007). Single-cell genomic sequencing using multiple displacement amplification. Curr Opin Microbiol 10: 510-516. (Pubitemid 350052686)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 510-516
    • Lasken, R.S.1
  • 43
    • 77949467821 scopus 로고    scopus 로고
    • Genome wide exploration of the origin and evolution of amino acids
    • Liu X, Zhang J, Ni F, Dong X, Han B, Han D et al. (2010). Genome wide exploration of the origin and evolution of amino acids. BMC Evol Biol 10: 77.
    • (2010) BMC Evol Biol , vol.10 , pp. 77
    • Liu, X.1    Zhang, J.2    Ni, F.3    Dong, X.4    Han, B.5    Han, D.6
  • 45
    • 0035198752 scopus 로고    scopus 로고
    • A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions
    • DOI 10.1046/j.1462-2920.2001.00162.x
    • Lopez-Garcia P, Moreira D, Lopez-Lopez A, Rodriguez-Valera F. (2001). A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions. Environ Microbiol 3: 72-78. (Pubitemid 33124636)
    • (2001) Environmental Microbiology , vol.3 , Issue.1 , pp. 72-78
    • Lopez-Garcia, P.1    Moreira, D.2    Lopez-Lopez, A.3    Rodriguez-Valera, F.4
  • 46
    • 51649116822 scopus 로고    scopus 로고
    • ProbeCheck-a central resource for evaluating oligonucleotide probe coverage and specificity
    • Loy A, Arnold R, Tischler P, Rattei T, Wagner M, Horn M. (2008). probeCheck-a central resource for evaluating oligonucleotide probe coverage and specificity. Environ Microbiol 10: 2894-2898.
    • (2008) Environ Microbiol , vol.10 , pp. 2894-2898
    • Loy, A.1    Arnold, R.2    Tischler, P.3    Rattei, T.4    Wagner, M.5    Horn, M.6
  • 51
    • 33745161855 scopus 로고    scopus 로고
    • Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes
    • DOI 10.1128/AEM.02214-05
    • Maturrano L, Santos F, Rossello-Mora R, Anton J. (2006). Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Appl Environ Microbiol 72: 3887-3895. (Pubitemid 43894848)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.6 , pp. 3887-3895
    • Maturrano, L.1    Santos, F.2    Rossello-Mora, R.3    Anton, J.4
  • 56
    • 0036688885 scopus 로고    scopus 로고
    • Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies
    • DOI 10.1007/s00792-001-0253-4
    • Ochsenreiter T, Pfeifer F, Schleper C. (2002). Diversity of archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies. Extremophiles 6: 267-274. (Pubitemid 41512096)
    • (2002) Extremophiles , vol.6 , Issue.4 , pp. 267-274
    • Ochsenreiter, T.1    Pfeifer, F.2    Schleper, C.3
  • 57
    • 77951769203 scopus 로고    scopus 로고
    • Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds
    • Oh D, Porter K, Russ B, Burns D, Dyall-Smith M. (2010). Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds. Extremophiles 14: 161-169.
    • (2010) Extremophiles , vol.14 , pp. 161-169
    • Oh, D.1    Porter, K.2    Russ, B.3    Burns, D.4    Dyall-Smith, M.5
  • 59
    • 0036160908 scopus 로고    scopus 로고
    • Diversity of halophilic microorganisms: Environments, phylogeny, physiology, and applications
    • DOI 10.1038/sj/jim/7000176
    • Oren A. (2002a). Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol 28: 56-63. (Pubitemid 34146235)
    • (2002) Journal of Industrial Microbiology and Biotechnology , vol.28 , Issue.1 , pp. 56-63
    • Oren, A.1
  • 61
    • 42949104034 scopus 로고    scopus 로고
    • Microbial life at high salt concentrations: Phylogenetic and metabolic diversity
    • Oren A. (2008). Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst 4: 2.
    • (2008) Saline Syst , vol.4 , pp. 2
    • Oren, A.1
  • 62
    • 70350678691 scopus 로고    scopus 로고
    • Emended descriptions of genera of the family Halobacteriaceae
    • Oren A, Arahal DR, Ventosa A. (2009). Emended descriptions of genera of the family Halobacteriaceae. Int J Syst Evol Microbiol 59: 637-642.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 637-642
    • Oren, A.1    Arahal, D.R.2    Ventosa, A.3
  • 63
    • 70149120519 scopus 로고    scopus 로고
    • Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina
    • Pagaling E, Wang H, Venables M, Wallace A, Grant WD, Cowan DA et al. (2009). Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. Appl Environ Microbiol 75: 5750-5760.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5750-5760
    • Pagaling, E.1    Wang, H.2    Venables, M.3    Wallace, A.4    Grant, W.D.5    Cowan, D.A.6
  • 64
    • 47149088683 scopus 로고    scopus 로고
    • Molecular signature of hypersaline adaptation: Insights from genome and proteome composition of halophilic prokaryotes
    • Paul S, Bag SK, Das S, Harvill ET, Dutta C. (2008). Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol 9: R70.
    • (2008) Genome Biol , vol.9
    • Paul, S.1    Bag, S.K.2    Das, S.3    Harvill, E.T.4    Dutta, C.5
  • 65
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ Hybridization with rRNA-targeted Oligonucleotide Probes
    • Marine Microbiology
    • Pernthaler J, Glockner FO, Schonuber W. (2001). Fluorescence in situ Hybridization with rRNA-targeted oligonucleotide probes. In: Paul JH (ed), Methods in Microbiology, Vol 30. Academic Press: San Diego, pp 207-226. (Pubitemid 33287422)
    • (2001) Methods in Microbiology , Issue.30 , pp. 207-226
    • Pernthaler, J.1    Glockner, F.-O.2    Schonhuber, W.3    Amann, R.4
  • 66
    • 34447513240 scopus 로고    scopus 로고
    • DarkHorse: A method for genome-wide prediction of horizontal gene transfer
    • Podell S, Gaasterland T. (2007). DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Genome Biol 8: R16.
    • (2007) Genome Biol , vol.8
    • Podell, S.1    Gaasterland, T.2
  • 67
    • 54949102400 scopus 로고    scopus 로고
    • A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    • Podell S, Gaasterland T, Allen EE. (2008). A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. BMC Bioinformat 9: 419.
    • (2008) BMC Bioinformat , vol.9 , pp. 419
    • Podell, S.1    Gaasterland, T.2    Allen, E.E.3
  • 68
    • 68149093715 scopus 로고    scopus 로고
    • Search for a 'Tree of Life' in the thicket of the phylogenetic forest
    • Puigbo P, Wolf YI, Koonin EV. (2009). Search for a 'Tree of Life' in the thicket of the phylogenetic forest. J Biol 8: 59.
    • (2009) J Biol , vol.8 , pp. 59
    • Puigbo, P.1    Wolf, Y.I.2    Koonin, E.V.3
  • 69
    • 49649089054 scopus 로고    scopus 로고
    • Molecular eco-systems biology: Towards an understanding of community function
    • Raes J, Bork P. (2008). Molecular eco-systems biology: towards an understanding of community function. Nat Rev Microbiol 6: 693-699.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 693-699
    • Raes, J.1    Bork, P.2
  • 71
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • DOI 10.1111/j.1574-6941.2007.00375.x
    • Ramette A. (2007). Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62: 142-160. (Pubitemid 47610610)
    • (2007) FEMS Microbiology Ecology , vol.62 , Issue.2 , pp. 142-160
    • Ramette, A.1
  • 72
    • 52949152371 scopus 로고    scopus 로고
    • Phylogenetic inference using whole genomes
    • Rannala B, Yang Z. (2008). Phylogenetic inference using whole genomes. Annu Rev Genomics Hum Genet 9: 217-231.
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 217-231
    • Rannala, B.1    Yang, Z.2
  • 73
    • 77956238024 scopus 로고    scopus 로고
    • Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea
    • Rhodes ME, Fitz-Gibbon ST, Oren A, House CH. (2010). Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea. Environ Microbiol 12: 2613-2623.
    • (2010) Environ Microbiol , vol.12 , pp. 2613-2623
    • Rhodes, M.E.1    Fitz-Gibbon, S.T.2    Oren, A.3    House, C.H.4
  • 75
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • DOI 10.1038/nature02053
    • Rokas A, Williams BL, King N, Carroll SB. (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804. (Pubitemid 37355944)
    • (2003) Nature , vol.425 , Issue.6960 , pp. 798-804
    • Rokas, A.1    Williams, B.I.2    King, N.3    Carroll, S.B.4
  • 76
    • 70349462787 scopus 로고    scopus 로고
    • Characterization of halophiles isolated from solar salterns in Baja California, Mexico
    • Sabet S, Diallo L, Hays L, Jung W, Dillon JG. (2009). Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles 13: 643-656.
    • (2009) Extremophiles , vol.13 , pp. 643-656
    • Sabet, S.1    Diallo, L.2    Hays, L.3    Jung, W.4    Dillon, J.G.5
  • 78
    • 34247098019 scopus 로고    scopus 로고
    • Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
    • DOI 10.1111/j.1574-6941.2007.00283.x
    • Sipos R, Szekely AJ, Palatinszky M, Revesz S, Marialigeti K, Nikolausz M. (2007). Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis. FEMS Microbiol Ecol 60: 341-350. (Pubitemid 46597310)
    • (2007) FEMS Microbiology Ecology , vol.60 , Issue.2 , pp. 341-350
    • Sipos, R.1    Szekely, A.J.2    Palatinszky, M.3    Revesz, S.4    Marialigeti, K.5    Nikolausz, M.6
  • 79
    • 35748943561 scopus 로고    scopus 로고
    • On reduced amino acid alphabets for phylogenetic inference
    • Susko E, Roger AJ. (2007). On reduced amino acid alphabets for phylogenetic inference. Mol Biol Evol 24: 2139-2150.
    • (2007) Mol Biol Evol , vol.24 , pp. 2139-2150
    • Susko, E.1    Roger, A.J.2
  • 82
    • 36549049268 scopus 로고    scopus 로고
    • Ortholog detection using the reciprocal smallest distance algorithm
    • DOI 10.1385/1-59745-515-6:95, Comparative Genomics
    • Wall DP, Deluca T. (2007). Ortholog detection using the reciprocal smallest distance algorithm. Methods Mol Biol 396: 95-110. (Pubitemid 350190036)
    • (2007) Methods in Molecular Biology , vol.396 , pp. 95-110
    • Wall, D.P.1    DeLuca, T.2
  • 83
    • 0028261412 scopus 로고
    • Gas vesicles
    • Walsby AE. (1994). Gas vesicles. Microbiol Rev 58: 94-144.
    • (1994) Microbiol Rev , vol.58 , pp. 94-144
    • Walsby, A.E.1
  • 88
    • 55649110049 scopus 로고    scopus 로고
    • A simple, fast, and accurate method of phylogenomic inference
    • Wu M, Eisen JA. (2008). A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9: R151.
    • (2008) Genome Biol , vol.9
    • Wu, M.1    Eisen, J.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.