-
1
-
-
70349456541
-
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: The role of genome evolution in cold adaptation
-
Epub ahead of print, doi: 10.1038/ ismej.2009.45, April 30
-
Alen,M.A. et al. (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: The role of genome evolution in cold adaptation. ISME J., [Epub ahead of print, doi: 10.1038/ ismej.2009.45., April 30, 2009]
-
(2009)
ISME J
-
-
Alen, M.A.1
-
2
-
-
65549129274
-
Genome analysis of the sulfur-reducing Crenarchaeote Staphylothermus marinus
-
Anderson,I. et al. (2009) Genome analysis of the sulfur-reducing Crenarchaeote Staphylothermus marinus. BMC Genomics, 10, 145.
-
(2009)
BMC Genomics
, vol.10
, pp. 145
-
-
Anderson, I.1
-
4
-
-
38549117301
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
Caspi,R. et al. (2008) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res., 36, D623-D631.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Caspi, R.1
-
5
-
-
3042673933
-
PeerGAD: A peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences
-
D'Ascenzo,M.D. et al. (2004) PeerGAD: A peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences. Nucleic Acids Res., 32, 3124-3135.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3124-3135
-
-
D'Ascenzo, M.D.1
-
6
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
Field,D. et al. (2008) The minimum information about a genome sequence (MIGS) specification. Nature Biotechnol., 26, 541-547.
-
(2008)
Nature Biotechnol
, vol.26
, pp. 541-547
-
-
Field, D.1
-
7
-
-
38549146894
-
The Pfam protein families database
-
Finn,R.D. et al. (2008) The Pfam protein families database. Nucleic Acids Res., 36, D281-D288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
-
8
-
-
9144253910
-
IntEnz, the integrated relational enzyme database
-
Fleischmann,A. et al. (2004) IntEnz, the integrated relational enzyme database. Nucleic Acids Res., 32, D434-D437.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Fleischmann, A.1
-
9
-
-
0042423439
-
Automatted annotation of microbial proteomes in Swiss Prot
-
Gattiker,A. et al. (2003) Automatted annotation of microbial proteomes in Swiss Prot. Comput. Biol. Chem., 27, 49-58.
-
(2003)
Comput. Biol. Chem
, vol.27
, pp. 49-58
-
-
Gattiker, A.1
-
10
-
-
84984996500
-
The Gene Ontology project in 2008
-
Gene Ontology Consortium
-
Gene Ontology Consortium. (2008) The Gene Ontology project in 2008. Nucleic Acids Res., 36, D440-D444.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
11
-
-
33644877924
-
ASAP: A resource for annotating, curating, comparing, and disseminating genomic data
-
Glasner,J.D. et al. (2006) ASAP: A resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Res., 34, D41-D45.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Glasner, J.D.1
-
12
-
-
13244268322
-
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
-
Green,M.L. and Karp,P. (2004) A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases. BMC Bioinformatics 5, 76.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 76
-
-
Green, M.L.1
Karp, P.2
-
13
-
-
65549153499
-
Genomic analysis of 'Elusimicrobium minutum,' the first cultivated representative of the phylum 'Elusimicrobia' (formerly termite group 1)
-
Herlemann,D.P.R. et al. (2009) Genomic analysis of 'Elusimicrobium minutum,' the first cultivated representative of the phylum 'Elusimicrobia' (formerly termite group 1). Appl. Environ. Microbiol. 75, 2841-2849.
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 2841-2849
-
-
Herlemann, D.P.R.1
-
14
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa,M. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480-D484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
-
15
-
-
38549144166
-
The genome on line database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
-
Liolios,K. et al. (2008) The genome on line database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res., 36, D475-D479.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liolios, K.1
-
16
-
-
38549101119
-
The integrated microbial genomes (IMG) system
-
Markowitz,V.M. et al. (2008a) The integrated microbial genomes (IMG) system. Nucleic Acids Res., 36, D528-D533.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
-
17
-
-
38549139537
-
IMG/M: A data management and analysis system for metagenomes
-
Markowitz,V.M. et al. (2008b) IMG/M: A data management and analysis system for metagenomes. Nucleic Acids Res., 36, D534-D538.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
-
18
-
-
33749858537
-
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
-
Martin,H.G. et al. (2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat. Biotechnol., 24, 1263-1269.
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 1263-1269
-
-
Martin, H.G.1
-
19
-
-
58449113058
-
-
Mavromatis,K. et al. (2009) Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS ONE, 4 e4192.
-
Mavromatis,K. et al. (2009) Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS ONE, 4 e4192.
-
-
-
-
20
-
-
25644458211
-
The subsystems aproach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek,R. et al. (2005) The subsystems aproach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acid Res., 33, 5691-5702.
-
(2005)
Nucleic Acid Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
-
21
-
-
33846057724
-
NCBI reference sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts, and proteins
-
Pruitt,K.D. et al. (2007) NCBI reference sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts, and proteins. Nucleic Acid Res., 35, D61-D65.
-
(2007)
Nucleic Acid Res
, vol.35
-
-
Pruitt, K.D.1
-
22
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford,K. et al. (2000) Artemis: Sequence visualization and annotation. Bioinformatics, 16, 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
-
23
-
-
34147162107
-
Genome re-annotation: A wiki solution?
-
Salzberg,S.L. (2007) Genome re-annotation: A wiki solution? Genome Biol., 8,102.
-
(2007)
Genome Biol
, vol.8
, pp. 102
-
-
Salzberg, S.L.1
-
24
-
-
33846113652
-
TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes
-
Selengut,J.D. et al. (2007) TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes Nucleic Acids Res., 35, D260-D264.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Selengut, J.D.1
-
25
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov,R.L. et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics 4, 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
26
-
-
31644444476
-
MaGe: A microbial genome annotation system supported by synteny results
-
Vallenet,D. et al. (2006) MaGe: A microbial genome annotation system supported by synteny results. Nucleic Acids Res., 34, 53-65.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 53-65
-
-
Vallenet, D.1
-
27
-
-
58149197594
-
Pseudomonas genome database: Facilitating user-freindly, comprehensive comparisons of microbial genomes
-
Winsor,G.L. et al. (2009) Pseudomonas genome database: facilitating user-freindly, comprehensive comparisons of microbial genomes. Nucleic Acids Res., 37, D483-D488.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Winsor, G.L.1
|