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Volumn 30, Issue , 2001, Pages

Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes

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EID: 33751536386     PISSN: 05809517     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Review
Times cited : (428)

References (41)
  • 1
    • 0029663960 scopus 로고    scopus 로고
    • Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization
    • A. Alfreider J. Pernthaler R. Amann B. Sattler F.-O. Glöckner A. Wille R. Psenner Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization Appl. Environ. Microbiol. 62 1996 2138 2144
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2138-2144
    • Alfreider, A.1    Pernthaler, J.2    Amann, R.3    Sattler, B.4    Glöckner, F.-O.5    Wille, A.6    Psenner, R.7
  • 2
    • 0029890507 scopus 로고    scopus 로고
    • In situ visualization of high genetic diversity in a natural microbial community
    • R. Amann J. Snaidr M. Wagner W. Ludwig K.-H. Schleifer In situ visualization of high genetic diversity in a natural microbial community J. Bacteriol. 178 1996 3496 3500
    • (1996) J. Bacteriol. , vol.178 , pp. 3496-3500
    • Amann, R.1    Snaidr, J.2    Wagner, M.3    Ludwig, W.4    Schleifer, K.-H.5
  • 3
    • 0343765712 scopus 로고    scopus 로고
    • Modern methods in subsurface microbiology — in situ identification of microorganisms with nucleic acid probes
    • R. Amann F.O. Glöckner A. Neef Modern methods in subsurface microbiology — in situ identification of microorganisms with nucleic acid probes FEMS Microbiol. Rev. 20 1997 191 200
    • (1997) FEMS Microbiol. Rev. , vol.20 , pp. 191-200
    • Amann, R.1    Glöckner, F.O.2    Neef, A.3
  • 4
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • R.I. Amann B.J. Binder R.J. Olson S.W. Chisholm R. Devereux D.A. Stahl Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations Appl. Environ. Microbiol. 56 1990 1919 1925
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 5
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • R.I. Amann L. Krumholz D.A. Stahl Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology J. Bacteriol. 172 1990 762 770
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 6
    • 0026745071 scopus 로고
    • Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes
    • R.I. Amann B. Zarda D.A. Stahl K.H. Schleifer Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes Appl. Environ. Microbiol. 58 1992 3007 3011
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3007-3011
    • Amann, R.I.1    Zarda, B.2    Stahl, D.A.3    Schleifer, K.H.4
  • 7
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • R.I. Amann W. Ludwig K.H. Schleifer Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol. Rev. 59 1995 143 169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 8
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • H. Daims A. Bruhl R. Amann K.H. Schleifer M. Wagner The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set Syst. Appl. Microbiol. 22 1999 434 444
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 9
    • 0024507744 scopus 로고
    • Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells
    • E.F. DeLong G.S. Wickham N.R. Pace Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells Science 243 1989 1360 1363
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 10
    • 0002548589 scopus 로고
    • Single-cell identification using fluorescently labeled ribosomal RNA-specific probes
    • E.F. DeLong Single-cell identification using fluorescently labeled ribosomal RNA-specific probes P. Kemp B.F. Sherr E.B. Sherr J. Cole Handbook of Methods in Aquatic Microbial Ecology 1993 Lewis Publishers Boca Raton 285 294
    • (1993) , pp. 285-294
    • DeLong, E.F.1
  • 11
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • E.F. DeLong K.Y. Wu B.B. Prezelin R.V.M. Jovine High abundance of Archaea in Antarctic marine picoplankton Nature 371 1994 695 697
    • (1994) Nature , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.M.4
  • 12
    • 0032729451 scopus 로고    scopus 로고
    • Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization
    • E.F. DeLong L.T. Taylor T.L. Marsh C.M. Preston Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization Appl. Environ. Microbiol. 65 1999 5554 5563
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5554-5563
    • DeLong, E.F.1    Taylor, L.T.2    Marsh, T.L.3    Preston, C.M.4
  • 13
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in-situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • B.M. Fuchs G. Wallner W. Beisker L. Schwippl W. Ludwig R. Amann Flow cytometric analysis of the in-situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes Appl. Environ. Microbiol. 64 1998 4973 4982
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, L.4    Ludwig, W.5    Amann, R.6
  • 14
    • 0032471178 scopus 로고    scopus 로고
    • Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native Archaea with fluorescent single cell probes
    • J.A. Fuhrman C.C. Ouverney Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native Archaea with fluorescent single cell probes Aquatic Ecol. 32 1998 3 15
    • (1998) Aquatic Ecol. , vol.32 , pp. 3-15
    • Fuhrman, J.A.1    Ouverney, C.C.2
  • 15
    • 0023958997 scopus 로고
    • Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
    • S.J. Giovannoni E.F. DeLong G.J. Olsen N.R. Pace Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells J. Bacteriol. 170 1988 720 726
    • (1988) J. Bacteriol. , vol.170 , pp. 720-726
    • Giovannoni, S.J.1    DeLong, E.F.2    Olsen, G.J.3    Pace, N.R.4
  • 17
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization
    • F.O. Glöckner B.M. Fuchs R. Amann Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization Appl. Environ. Microbiol. 65 1999 3721 3726
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 18
    • 0030620894 scopus 로고    scopus 로고
    • Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining
    • M. Karner J.A. Fuhrman Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining Appl. Environ. Microbiol. 63 1997 1208 1213
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1208-1213
    • Karner, M.1    Fuhrman, J.A.2
  • 19
    • 0344765523 scopus 로고    scopus 로고
    • Microbial community composition of Wadden sea sediments as revealed by fluorescence in situ hybridization
    • E. Llobet-Brossa R. Rosselló-Mora R. Amann Microbial community composition of Wadden sea sediments as revealed by fluorescence in situ hybridization Appl. Environ. Microbiol. 64 1998 2691 2696
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2691-2696
    • Llobet-Brossa, E.1    Rosselló-Mora, R.2    Amann, R.3
  • 20
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • W. Ludwig K.-H. Schleifer Bacterial phylogeny based on 16S and 23S rRNA sequence analysis FEMS Microbiol. Rev. 15 1994 155 173
    • (1994) FEMS Microbiol. Rev. , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.-H.2
  • 21
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: Problems and solutions
    • W. Manz R. Amann W. Ludwig M. Wagner K.-H. Schleifer Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria : Problems and solutions Syst. Appl. Microbiol. 15 1992 593 600
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 22
    • 0031814110 scopus 로고    scopus 로고
    • Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
    • A.E. Murray C.M. Preston R. Massana L.T. Taylor A. Blakis K. Wu E.F. Delong Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica Appl. Environ. Microbiol. 64 1998 2585 2595
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2585-2595
    • Murray, A.E.1    Preston, C.M.2    Massana, R.3    Taylor, L.T.4    Blakis, A.5    Wu, K.6    Delong, E.F.7
  • 23
    • 0029912111 scopus 로고    scopus 로고
    • Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms
    • A. Neef A. Zaglauer H. Meier R. Amann H. Lemmer K.H. Schleifer Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms Appl. Environ. Microbiol. 62 1996 4329 4339
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4329-4339
    • Neef, A.1    Zaglauer, A.2    Meier, H.3    Amann, R.4    Lemmer, H.5    Schleifer, K.H.6
  • 24
    • 0030814448 scopus 로고    scopus 로고
    • Increase in fluorescence intensity of 16S rRNA in situ hybridization in natural samples treated with chloramphenicol
    • C.C. Ouverney J.A. Fuhrman Increase in fluorescence intensity of 16S rRNA in situ hybridization in natural samples treated with chloramphenicol Appl. Environ. Microbiol. 63 1997 2735 2740
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2735-2740
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 25
    • 0030613659 scopus 로고    scopus 로고
    • Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage
    • J. Pernthaler T. Posch K. Šimek J. Vrba R. Amann R. Psenner Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage Appl. Environ. Microbiol. 63 1997 596 601
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 596-601
    • Pernthaler, J.1    Posch, T.2    Šimek, K.3    Vrba, J.4    Amann, R.5    Psenner, R.6
  • 27
    • 0344483898 scopus 로고    scopus 로고
    • The response of the microbial community of marine sediments to organic input under anaerobic conditions
    • R. Rosselló-Mora B. Thamdrup H. Schäfer R. Weller R. Amann The response of the microbial community of marine sediments to organic input under anaerobic conditions Syst. Appl. Microbiol. 22 1999 237 248
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 237-248
    • Rosselló-Mora, R.1    Thamdrup, B.2    Schäfer, H.3    Weller, R.4    Amann, R.5
  • 28
    • 0342711280 scopus 로고    scopus 로고
    • Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification
    • W. Schönhuber B. Fuchs S. Juretschko R. Amann Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification Appl. Environ. Microbiol. 63 1997 3268 3273
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3268-3273
    • Schönhuber, W.1    Fuchs, B.2    Juretschko, S.3    Amann, R.4
  • 29
    • 0040737625 scopus 로고    scopus 로고
    • In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes
    • W. Schönhuber B. Zarda S. Eix R. Rippka M. Herdman W. Ludwig R. Amann In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes Appl. Environ. Microbiol. 65 1999 1259 1267
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1259-1267
    • Schönhuber, W.1    Zarda, B.2    Eix, S.3    Rippka, R.4    Herdman, M.5    Ludwig, W.6    Amann, R.7
  • 30
    • 0027337265 scopus 로고
    • Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions
    • F. Schut E.J. De Vries J.C. Gottschal B.R. Robertson W. Harder R.A. Prins D.K. Button Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions Appl. Environ. Microbiol. 59 1993 2150 2160
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2150-2160
    • Schut, F.1    De Vries, E.J.2    Gottschal, J.C.3    Robertson, B.R.4    Harder, W.5    Prins, R.A.6    Button, D.K.7
  • 31
    • 0030613092 scopus 로고    scopus 로고
    • Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes
    • K. Šimek J. Vrba J. Pernthaler T. Posch P. Hartman J. Nedoma R. Psenner Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes Appl. Environ. Microbiol. 63 1997 587 595
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 587-595
    • Šimek, K.1    Vrba, J.2    Pernthaler, J.3    Posch, T.4    Hartman, P.5    Nedoma, J.6    Psenner, R.7
  • 32
    • 0032741450 scopus 로고    scopus 로고
    • Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir
    • K. Šimek P. Kojecka J. Nedoma P. Hartman J. Vrba J.R. Dolan Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir Limnol. Oceanogr. 44 1999 1634 1644
    • (1999) Limnol. Oceanogr. , vol.44 , pp. 1634-1644
    • Šimek, K.1    Kojecka, P.2    Nedoma, J.3    Hartman, P.4    Vrba, J.5    Dolan, J.R.6
  • 33
    • 0344132574 scopus 로고    scopus 로고
    • Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean
    • M. Simon O. Glöckner Frank R. Amann Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean Aquatic Microbial Ecol. 18 1999 275 284
    • (1999) Aquatic Microbial Ecol. , vol.18 , pp. 275-284
    • Simon, M.1    Glöckner Frank, O.2    Amann, R.3
  • 34
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • D.A. Stahl R. Amann Development and application of nucleic acid probes E. Stackebrandt M. Goodfellow Nucleic Acid Techniques in Bacterial Systematics 1991 John Wiley and Sons Ltd Chichester, UK 205 248
    • (1991) , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 35
    • 0031909734 scopus 로고    scopus 로고
    • Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds
    • M. Stoffels R. Amann W. Ludwig D. Hekmat K.-H. Schleifer Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds Appl. Environ. Microbiol. 64 1998 930 939
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 930-939
    • Stoffels, M.1    Amann, R.2    Ludwig, W.3    Hekmat, D.4    Schleifer, K.-H.5
  • 37
    • 0027931265 scopus 로고
    • Identification of whole fixed bacterial cells with nonradioactive 23S rRNA-targeted polynucleotide probes
    • K. Trebesius R. Amann W. Ludwig K. Mühlegger K.-H. Schleifer Identification of whole fixed bacterial cells with nonradioactive 23S rRNA-targeted polynucleotide probes Appl. Environ. Microbiol. 60 1994 3228 3235
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3228-3235
    • Trebesius, K.1    Amann, R.2    Ludwig, W.3    Mühlegger, K.4    Schleifer, K.-H.5
  • 39
    • 0029974413 scopus 로고    scopus 로고
    • Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow)
    • P. Weiss B. Schweitzer R. Amann M. Simon Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow) Appl. Environ. Microbiol. 62 1996 1998 2005
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1998-2005
    • Weiss, P.1    Schweitzer, B.2    Amann, R.3    Simon, M.4
  • 40
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: proposal for the domains Archaea Bacteria and Eucarya
    • C.R. Woese O. Kandler M.L. Wheelis Towards a natural system of organisms: proposal for the domains Archaea Bacteria and Eucarya Proc. Natl. Acad. Sci. USA 87 1990 4576 4579
    • (1990) , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 41
    • 0028990019 scopus 로고
    • Total counts of marine Bacteria include a large fraction of non-nucleoid-containing Bacteria (Ghosts)
    • U.L. Zweifel A. Hagström Total counts of marine Bacteria include a large fraction of non-nucleoid-containing Bacteria (Ghosts) Appl. Environ. Microbiol. 61 1995 2180 2185
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2180-2185
    • Zweifel, U.L.1    Hagström, A.2


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