-
2
-
-
0034554741
-
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
-
DOI 10.1046/j.1462-2920.2000.00133.x
-
Béjà O, et al. (2000) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol 2:516-529. (Pubitemid 33136690)
-
(2000)
Environmental Microbiology
, vol.2
, Issue.5
, pp. 516-529
-
-
Beja, O.1
Suzuki, M.T.2
Koonin, E.V.3
Aravind, L.4
Hadd, A.5
Nguyen, L.P.6
Villacorta, R.7
Garrigues, C.8
Jovanovich, S.B.9
Feldman, R.A.10
Delong, E.F.11
-
3
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific. PLoS Biol 5:e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
-
4
-
-
11144354360
-
Environmental Genome Shotgun Sequencing of the Sargasso Sea
-
DOI 10.1126/science.1093857
-
Venter JC, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74. (Pubitemid 38451457)
-
(2004)
Science
, vol.304
, Issue.5667
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.-H.22
Smith, H.O.23
more..
-
5
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
Dick GJ, et al. (2009) Community-wide analysis of microbial genome sequence signatures. Genome Biol 10:R85.
-
(2009)
Genome Biol
, vol.10
-
-
Dick, G.J.1
-
6
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
Hallam SJ, et al. (2006) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci USA 103:18296-18301.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18296-18301
-
-
Hallam, S.J.1
-
7
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
-
8
-
-
33846923050
-
Genome dynamics in a natural archaeal population
-
Allen EE, et al. (2007) Genome dynamics in a natural archaeal population. Proc Natl Acad Sci USA 104:1883-1888.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1883-1888
-
-
Allen, E.E.1
-
9
-
-
33645760951
-
Comparative genomics of emerging human ehrlichiosis agents
-
Hotopp JC, et al. (2006) Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet 2:e21.
-
(2006)
PLoS Genet
, vol.2
-
-
Hotopp, J.C.1
-
10
-
-
0242300069
-
The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
-
DOI 10.1073/pnas.1735403100
-
Waters E, et al. (2003) The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 100:12984-12988. (Pubitemid 37340012)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.22
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
Kretz, K.11
Lin, X.12
Mathur, E.13
Ni, J.14
Podar, M.15
Richardson, T.16
Sutton, G.G.17
Simon, M.18
Soll, D.19
Stetter, K.O.20
Short, J.M.21
Noordewier, M.22
more..
-
11
-
-
57049130376
-
A genomic analysis of the archaeal system Ignicoccus hospitalis- Nanoarchaeum equitans
-
Podar M, et al. (2008) A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biol 9:R158.
-
(2008)
Genome Biol
, vol.9
-
-
Podar, M.1
-
12
-
-
24744433514
-
Genomes on the shrink
-
Ochman H (2005) Genomes on the shrink. Proc Natl Acad Sci USA 102:11959-11960.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 11959-11960
-
-
Ochman, H.1
-
13
-
-
33749987465
-
The 160-kilobase genome of the bacterial endosymbiont Carsonella
-
DOI 10.1126/science.1134196
-
Nakabachi A, et al. (2006) The 160-kilobase genome of the bacterial endosymbiont Carsonella. Science 314:267. (Pubitemid 44571965)
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 267
-
-
Nakabachi, A.1
Yamashita, A.2
Toh, H.3
Ishikawa, H.4
Dunbar, H.E.5
Moran, N.A.6
Hattori, M.7
-
14
-
-
49749094746
-
Ignicoccus hospitalis and Nanoarchaeum equitans: Ultrastructure, cell-cell interaction, and 3D reconstruction from serial sections of freeze-substituted cells and by electron cryotomography
-
Junglas B, et al. (2008) Ignicoccus hospitalis and Nanoarchaeum equitans: Ultrastructure, cell-cell interaction, and 3D reconstruction from serial sections of freeze-substituted cells and by electron cryotomography. Arch Microbiol 190:395-408.
-
(2008)
Arch Microbiol
, vol.190
, pp. 395-408
-
-
Junglas, B.1
-
15
-
-
0035527414
-
Environmental diversity of bacteria and archaea
-
DeLong EF, Pace NR (2001) Environmental diversity of bacteria and archaea. Syst Biol 50:470-478.
-
(2001)
Syst Biol
, vol.50
, pp. 470-478
-
-
DeLong, E.F.1
Pace, N.R.2
-
16
-
-
58549091696
-
Proteomics-inferred genome typing (PIGT) demonstrates interpopulation recombination as a strategy for environmental adaptation
-
Denef VJ, et al. (2009) Proteomics-inferred genome typing (PIGT) demonstrates interpopulation recombination as a strategy for environmental adaptation. Environ Microbiol 11:313-325.
-
(2009)
Environ Microbiol
, vol.11
, pp. 313-325
-
-
Denef, V.J.1
-
17
-
-
0034629254
-
An archaeal iron-oxidizing extreme acidophile important in acid mine drainage
-
Edwards KJ, Bond PL, Gihring TM, Banfield JF (2000) An archaeal iron-oxidizing extreme acidophile important in acid mine drainage. Science 287:1796-1799.
-
(2000)
Science
, vol.287
, pp. 1796-1799
-
-
Edwards, K.J.1
Bond, P.L.2
Gihring, T.M.3
Banfield, J.F.4
-
18
-
-
19144366548
-
Acid mine drainage biogeochemistry at Iron Mountain, California
-
DOI 10.1063/1.1769131
-
Druschel GK, Baker BJ, Gihring TM, Banfield JF (2004) Acid mine drainage biogeochemistry at Iron Mountain, California. Geochem Trans 5:13-32. (Pubitemid 41018505)
-
(2004)
Geochemical Transactions
, vol.5
, Issue.2
, pp. 13-32
-
-
Druschel, G.K.1
Baker, B.J.2
Gihring, T.M.3
Banfield, J.F.4
-
19
-
-
0037447834
-
Microbial communities in acid mine drainage
-
DOI 10.1016/S0168-6496(03)00028-X
-
Baker BJ, Banfield JF (2003) Microbial communities in acid mine drainage. FEMS Microbiol Ecol 44:139-152. (Pubitemid 36423410)
-
(2003)
FEMS Microbiology Ecology
, vol.44
, Issue.2
, pp. 139-152
-
-
Baker, B.J.1
Banfield, J.F.2
-
20
-
-
33845898858
-
Lineages of acidophilic archaea revealed by community genomic analysis
-
Baker BJ, et al. (2006) Lineages of acidophilic archaea revealed by community genomic analysis. Science 314:1933-1935.
-
(2006)
Science
, vol.314
, pp. 1933-1935
-
-
Baker, B.J.1
-
21
-
-
55549092047
-
Seasonality of rDNA-and rRNA-dvverived archaeal communities and methanogenic potential in a boreal mire
-
Juottonen H, Tuittila E-S, Juutinen S, Fritze H, Yrjälä K (2008) Seasonality of rDNA-and rRNA-dvverived archaeal communities and methanogenic potential in a boreal mire. ISME J 2:1157-1168.
-
(2008)
ISME J
, vol.2
, pp. 1157-1168
-
-
Juottonen, H.1
Tuittila, E.-S.2
Juutinen, S.3
Fritze, H.4
Yrjälä, K.5
-
22
-
-
0038725668
-
A gene encoding a novel extremely thermostable 1,4-beta-xylanase isolated directly from an environmental DNA sample
-
DOI 10.1007/s00792-002-0296-1
-
Sunna A, Bergquist PL (2003) A gene encoding a novel extremely thermostable 1,4-beta-xylanase isolated directly from an environmental DNA sample. Extremophiles 7:63-70. (Pubitemid 40856328)
-
(2003)
Extremophiles
, vol.7
, Issue.1
, pp. 63-70
-
-
Sunna, A.1
Bergquist, P.L.2
-
23
-
-
58549108582
-
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon
-
Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF (2009) Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. ISME J 3:159-167.
-
(2009)
ISME J
, vol.3
, pp. 159-167
-
-
Comolli, L.R.1
Baker, B.J.2
Downing, K.H.3
Siegerist, C.E.4
Banfield, J.F.5
-
24
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
DOI 10.1038/nature05624, PII NATURE05624
-
Lo I, et al. (2007) Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446:537-541. (Pubitemid 46514723)
-
(2007)
Nature
, vol.446
, Issue.7135
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
Verberkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
Dibartolo, G.6
Tyson, G.W.7
Allen, E.E.8
Ram, R.J.9
Detter, J.C.10
Richardson, P.11
Thelen, M.P.12
Hettich, R.L.13
Banfield, J.F.14
-
25
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
DOI 10.1186/gb-2007-8-1-r10
-
Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P (2007) Prediction of effective genome size in metagenomic samples. Genome Biol 8:R10. (Pubitemid 351910992)
-
(2007)
Genome Biology
, vol.8
, Issue.1
-
-
Raes, J.1
Korbel, J.O.2
Lercher, M.J.3
Von Mering, C.4
Bork, P.5
-
26
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov RL, et al. (2003) The COG database: An updated version includes eukaryotes. BMC Bioinformatics 4:41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
27
-
-
0032478545
-
Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
-
DOI 10.1016/S0092-8674(00)81152-6
-
Ditzel L, et al. (1998) Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell 93:125-138. (Pubitemid 28173558)
-
(1998)
Cell
, vol.93
, Issue.1
, pp. 125-138
-
-
Ditzel, L.1
Lowe, J.2
Stock, D.3
Stetter, K.-O.4
Huber, H.5
Huber, R.6
Steinbacher, S.7
-
28
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram RJ, et al. (2005) Community proteomics of a natural microbial biofilm. Science 308:1915-1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
-
29
-
-
16244380542
-
Cooperativity in the thermosome
-
Bigotti MG, Clarke AR (2005) Cooperativity in the thermosome. J Mol Biol 348:13-26.
-
(2005)
J Mol Biol
, vol.348
, pp. 13-26
-
-
Bigotti, M.G.1
Clarke, A.R.2
-
30
-
-
0037025191
-
An alternative flavin-dependent mechanism for thymidylate synthesis
-
DOI 10.1126/science.1072113
-
Myllykallio H, et al. (2002) An alternative flavin-dependent mechanism for thymidylate synthesis. Science 297:105-107. (Pubitemid 34743103)
-
(2002)
Science
, vol.297
, Issue.5578
, pp. 105-107
-
-
Myllykallio, H.1
Lipowski, G.2
Leduc, D.3
Filee, J.4
Forterre, P.5
Liebl, U.6
-
31
-
-
45849112155
-
A korarchaeal genome reveals insights into the evolution of the Archaea
-
DOI 10.1073/pnas.0801980105
-
Elkins JG, et al. (2008) A korarchaeal genome reveals insights into the evolution of the Archaea. Proc Natl Acad Sci USA 105:8102-8107. (Pubitemid 351904715)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.23
, pp. 8102-8107
-
-
Elkins, J.G.1
Podar, M.2
Graham, D.E.3
Makarova, K.S.4
Wolf, Y.5
Randau, L.6
Hedlund, B.P.7
Brochier-Armanet, C.8
Kunin, V.9
Anderson, I.10
Lapidus, A.11
Goltsman, E.12
Barry, K.13
Koonin, E.V.14
Hugenholtz, P.15
Kyrpides, N.16
Wanner, G.17
Richardson, P.18
Keller, M.19
Stetter, K.O.20
more..
-
32
-
-
41949089913
-
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction
-
DOI 10.1128/JB.01949-07
-
Anderson I, et al. (2008) Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. J Bacteriol 190:2957-2965. (Pubitemid 351508195)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.8
, pp. 2957-2965
-
-
Anderson, I.1
Rodriguez, J.2
Susanti, D.3
Porat, I.4
Reich, C.5
Ulrich, L.E.6
Elkins, J.G.7
Mavromatis, K.8
Lykidis, A.9
Kim, E.10
Thompson, L.S.11
Nolan, M.12
Land, M.13
Copeland, A.14
Lapidus, A.15
Lucas, S.16
Detter, C.17
Zhulin, I.B.18
Olsen, G.J.19
Whitman, W.20
Mukhopadhyay, B.21
Bristow, J.22
Kyrpides, N.23
more..
-
33
-
-
19944434206
-
Identification and characterization of a novel vitamin B12 (cobalamin) biosynthetic enzyme (CobZ) from Rhodobacter capsulatus, containing flavin, heme, and Fe-S cofactors
-
McGoldrick HM, et al. (2005) Identification and characterization of a novel vitamin B12 (cobalamin) biosynthetic enzyme (CobZ) from Rhodobacter capsulatus, containing flavin, heme, and Fe-S cofactors. J Biol Chem 280:1086-1094.
-
(2005)
J Biol Chem
, vol.280
, pp. 1086-1094
-
-
McGoldrick, H.M.1
-
34
-
-
33646898143
-
Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1
-
Yamazaki S, et al. (2006) Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. Mol Cell Proteomics 5:811-823.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 811-823
-
-
Yamazaki, S.1
-
35
-
-
33847205038
-
Characterization of strong promoters from an environmental Flavobactenum hibernum strain by using a green fluorescent protein-based reporter system
-
DOI 10.1128/AEM.01577-06
-
Chen S, Bagdasarian M, Kaufman MG, Walker ED (2007) Characterization of strong promoters from an environmental Flavobacterium hibernum strain by using a green fluorescent protein-based reporter system. Appl Environ Microbiol 73:1089-1100. (Pubitemid 46303224)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.4
, pp. 1089-1100
-
-
Chen, S.1
Bagdasarian, M.2
Kaufman, M.G.3
Walker, E.D.4
-
36
-
-
23144460836
-
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
-
DOI 10.1093/nar/gki366
-
Schattner P, Brooks AN, Lowe TM (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 33:W686-W689. (Pubitemid 44530010)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
37
-
-
33646876182
-
Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms
-
DOI 10.1093/molbev/msk019
-
Xu L, et al. (2006) Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms. Mol Biol Evol 23:1107-1108. (Pubitemid 43781585)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.6
, pp. 1107-1108
-
-
Xu, L.1
Chen, H.2
Hu, X.3
Zhang, R.4
Zhang, Z.5
Luo, Z.W.6
-
38
-
-
0036792830
-
tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domainspecific features
-
Marck C, Grosjean H (2002) tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domainspecific features. RNA 8:1189-1232.
-
(2002)
RNA
, vol.8
, pp. 1189-1232
-
-
Marck, C.1
Grosjean, H.2
-
39
-
-
13444251251
-
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- And 3′-halves
-
DOI 10.1038/nature03233
-
Randau L, Münch R, Hohn MJ, Jahn D, Söll D (2005) Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves. Nature 433:537-541. (Pubitemid 40204312)
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 537-541
-
-
Randau, L.1
Munch, R.2
Hohn, M.J.3
Jahn, D.4
Soll, D.5
-
40
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
DOI 10.1038/417063a
-
Huber H, et al. (2002) A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417:63-67. (Pubitemid 34498815)
-
(2002)
Nature
, vol.417
, Issue.6884
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
41
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
DOI 10.1126/science.1138140
-
Barrangou R, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712. (Pubitemid 46515624)
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
42
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng JK, McCormack AL, Yates I, John R (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, I.3
John, R.4
|