메뉴 건너뛰기




Volumn 8, Issue 2, 2009, Pages 259-267

Assessment of alkaliphilic haloarchaeal diversity in Sua pan evaporator ponds in Botswana

Author keywords

Biodiversity; Haloalkaliphile; Natrialba; Natronococcus; Natronorubrum; Solar salterns

Indexed keywords

RNA 16S;

EID: 59649123898     PISSN: None     EISSN: 16845315     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (15)

References (37)
  • 1
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker GC, Smith JJ, Cowan DA (2003). Review and re-analysis of domain-specific 16S primers. J. Microbiol. Methods 55: 541-555.
    • (2003) J. Microbiol. Methods , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 3
    • 3142513759 scopus 로고    scopus 로고
    • Extremely halophilic bacterial communities in Şereflikogchisar salt lake in Turkey
    • Birbir M, Sesal C (2003). Extremely halophilic bacterial communities in Şereflikogchisar salt lake in Turkey. Turk. J. Biol. 27: 7-22.
    • (2003) Turk. J. Biol , vol.27 , pp. 7-22
    • Birbir, M.1    Sesal, C.2
  • 4
    • 4444305820 scopus 로고    scopus 로고
    • Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarcheal groups in an Australian crystallizer pond are cultivable
    • Burns DG, Camakaris HM, Janssen PH, Dyall-Smith ML (2004). Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarcheal groups in an Australian crystallizer pond are cultivable. Appl. Environ. Microbiol. 70: 5258-5265.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5258-5265
    • Burns, D.G.1    Camakaris, H.M.2    Janssen, P.H.3    Dyall-Smith, M.L.4
  • 5
    • 59649092516 scopus 로고    scopus 로고
    • Document M2-A9 and M7-A7, Performance Standards for Antimicrobial Susceptibility Testing
    • Clinical and Laboratory Standards Institute , Supplement
    • Clinical and Laboratory Standards Institute (2006). Document M2-A9 and M7-A7, Performance Standards for Antimicrobial Susceptibility Testing; Sixteenth Information Supplement.
    • (2006) Sixteenth Information
  • 6
    • 33746217512 scopus 로고    scopus 로고
    • Cui H-L, Tohty D, Zhou P-J, Liu S-J (2006). Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China. Int. J. Syst. Evol. Microbiol., 56: 1631-1634.
    • Cui H-L, Tohty D, Zhou P-J, Liu S-J (2006). Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China. Int. J. Syst. Evol. Microbiol., 56: 1631-1634.
  • 7
    • 0033861764 scopus 로고    scopus 로고
    • Distribution and diversity of archaea corresponding to the limnological cycle of a hypersaline stratified lake (Solar Lake, Sinai Egypt)
    • Cytryn E, Minz D, OremLand RS, Cohen Y (2000). Distribution and diversity of archaea corresponding to the limnological cycle of a hypersaline stratified lake (Solar Lake, Sinai Egypt). Appl. Environ. Microbiol. 66: 3269-3276.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3269-3276
    • Cytryn, E.1    Minz, D.2    OremLand, R.S.3    Cohen, Y.4
  • 8
    • 38849187334 scopus 로고
    • Field Method for Determining the Saltiness of Brackish Water
    • Denny FE (1927). Field Method for Determining the Saltiness of Brackish Water. Ecology 8: 106-112.
    • (1927) Ecology , vol.8 , pp. 106-112
    • Denny, F.E.1
  • 10
    • 0000919838 scopus 로고
    • An improved technique for staining red halophilic bacteria
    • Dussault HP (1955). An improved technique for staining red halophilic bacteria. J. Bacteriol. 70: 484-485.
    • (1955) J. Bacteriol , vol.70 , pp. 484-485
    • Dussault, H.P.1
  • 11
    • 59649092250 scopus 로고    scopus 로고
    • Dyall-Smith M 2000, The Halohandbook: Protocols for halobacterial genetics. Version 3.0. University of Melbourne, Australia
    • Dyall-Smith M (2000). The Halohandbook: Protocols for halobacterial genetics. Version 3.0. University of Melbourne, Australia.
  • 12
    • 43949112272 scopus 로고    scopus 로고
    • Eckardt FD, Brayant RG, McCulloch G, Spiro B, Wood WW (2008). The hydrochemistry of a sme-arid pan basin case study: Sua Pan, Makgadikgadi, Botswana. Appl. Geochem. doi:10.1016/j.apgeochem.2007.12.033.
    • Eckardt FD, Brayant RG, McCulloch G, Spiro B, Wood WW (2008). The hydrochemistry of a sme-arid pan basin case study: Sua Pan, Makgadikgadi, Botswana. Appl. Geochem. doi:10.1016/j.apgeochem.2007.12.033.
  • 13
    • 8444239817 scopus 로고    scopus 로고
    • Survey of archaeal diversity reveals an abundance of halophilic archaea in a low-salt, sulfide- and sulfur-rich spring
    • Elshahed MS, Najar FZ, Roe BE, Oren A, Dewers TA, Krumholz LR (2004). Survey of archaeal diversity reveals an abundance of halophilic archaea in a low-salt, sulfide- and sulfur-rich spring. Appl. Environ. Microbiol. 70: 2230-2239.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 2230-2239
    • Elshahed, M.S.1    Najar, F.Z.2    Roe, B.E.3    Oren, A.4    Dewers, T.A.5    Krumholz, L.R.6
  • 14
    • 35648947338 scopus 로고    scopus 로고
    • Phylogenetic relationships within the family Halobacteriaceae inferred from rpoB' gene and protein sequences
    • Enache M, Itoh T, Fukusguna T, Usami R, Dumitru L, Kamekura M (2007). Phylogenetic relationships within the family Halobacteriaceae inferred from rpoB' gene and protein sequences. Int. J. Syst. Evol. Microbiol. 57: 2289-2295.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 2289-2295
    • Enache, M.1    Itoh, T.2    Fukusguna, T.3    Usami, R.4    Dumitru, L.5    Kamekura, M.6
  • 15
    • 5444247202 scopus 로고    scopus 로고
    • Halorubrum xinjiangense sp. nov., a novel halophile isolated from saline lakes in China
    • Feng J, Zhou P-J, Liu S-J (2004). Halorubrum xinjiangense sp. nov., a novel halophile isolated from saline lakes in China. Int. J. Syst. Evol. Microbiol. 54: 1789-1791.
    • (2004) Int. J. Syst. Evol. Microbiol , vol.54 , pp. 1789-1791
    • Feng, J.1    Zhou, P.-J.2    Liu, S.-J.3
  • 17
    • 0033136102 scopus 로고    scopus 로고
    • Novel archaeal phylotypes from an east African alkaline saltern
    • Grant S, Grant WD, Jones BE, Kato C, Li L (1999). Novel archaeal phylotypes from an east African alkaline saltern. Extremophiles 3: 139-145.
    • (1999) Extremophiles , vol.3 , pp. 139-145
    • Grant, S.1    Grant, W.D.2    Jones, B.E.3    Kato, C.4    Li, L.5
  • 18
    • 4344573472 scopus 로고    scopus 로고
    • Life at low water activity
    • Grant WD (2004). Life at low water activity. Phil. Trans. R. Soc. Lond. 359: 1249-1267.
    • (2004) Phil. Trans. R. Soc. Lond , vol.359 , pp. 1249-1267
    • Grant, W.D.1
  • 19
    • 59649118890 scopus 로고    scopus 로고
    • Hall TA (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis programme for Windows 95/98/NT. Nucl. Acid. Symp. Ser. 41: 95-98.
    • Hall TA (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis programme for Windows 95/98/NT. Nucl. Acid. Symp. Ser. 41: 95-98.
  • 20
    • 59649124940 scopus 로고    scopus 로고
    • Hughes RH, Hughes JS (1992). A directory of African Wetlands. IUCN, Gland, Switzerland and Cambridge. ISBN: 2880329493.
    • Hughes RH, Hughes JS (1992). A directory of African Wetlands. IUCN, Gland, Switzerland and Cambridge. ISBN: 2880329493.
  • 21
    • 0030807963 scopus 로고    scopus 로고
    • Kamekura M, Dyall-Smith ML, Upasani V, Ventosa A, Kates M (1997) Diversity of alkaliphilic Halobacteria: Proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int. J. Syst. Bacteriol. 47: 853-857.
    • Kamekura M, Dyall-Smith ML, Upasani V, Ventosa A, Kates M (1997) Diversity of alkaliphilic Halobacteria: Proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int. J. Syst. Bacteriol. 47: 853-857.
  • 22
    • 0028889639 scopus 로고
    • Natronococcus amylolyticus sp. nov., a haloaklaiphilic archaeon
    • Kanai H, Kobayashi T, Aono R, Kudo T (1995). Natronococcus amylolyticus sp. nov., a haloaklaiphilic archaeon. Int. J. Syst. Bacteriol. 45: 762-766.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 762-766
    • Kanai, H.1    Kobayashi, T.2    Aono, R.3    Kudo, T.4
  • 23
    • 0008919675 scopus 로고    scopus 로고
    • Physiology of the alkaliphilic methanogen Z-7936, a new strain of Methanosulsus zhilinaeae isolated from Lake Magadi
    • Kevbrin VV, Lysenko AM, Zhilina TN (1997). Physiology of the alkaliphilic methanogen Z-7936, a new strain of Methanosulsus zhilinaeae isolated from Lake Magadi. Microbiology 66: 261-266.
    • (1997) Microbiology , vol.66 , pp. 261-266
    • Kevbrin, V.V.1    Lysenko, A.M.2    Zhilina, T.N.3
  • 24
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • Konstantinos TK, Tiedje JM (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr. Opin. Microbiol. 10: 504-509.
    • (2007) Curr. Opin. Microbiol , vol.10 , pp. 504-509
    • Konstantinos, T.K.1    Tiedje, J.M.2
  • 25
    • 33745161855 scopus 로고    scopus 로고
    • Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes
    • Maturrano L, Santos F, Rosselló-Mora R, Antón J (2006). Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Appl. Environ. Microbiol. 72: 3887-3895.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 3887-3895
    • Maturrano, L.1    Santos, F.2    Rosselló-Mora, R.3    Antón, J.4
  • 26
    • 37749010649 scopus 로고    scopus 로고
    • Hydrochemical fluctuations and crustacean community composition in an ephemeral saline (Sua pan, Makgadikgadi Botswana)
    • McCullosh GP, Irvine K, Eckardt FD, Bryant R (2008). Hydrochemical fluctuations and crustacean community composition in an ephemeral saline (Sua pan, Makgadikgadi Botswana). Hydrobiologia 596: 31-46.
    • (2008) Hydrobiologia , vol.596 , pp. 31-46
    • McCullosh, G.P.1    Irvine, K.2    Eckardt, F.D.3    Bryant, R.4
  • 27
    • 0030669836 scopus 로고    scopus 로고
    • The cell wall of the extremely halophilic archaeon Natronococcus occultus
    • Niemetz R, Kärcher U, Kandler O, Tindall BJ, König H (1997). The cell wall of the extremely halophilic archaeon Natronococcus occultus. Eur. J. Biochem. 249: 905-911.
    • (1997) Eur. J. Biochem , vol.249 , pp. 905-911
    • Niemetz, R.1    Kärcher, U.2    Kandler, O.3    Tindall, B.J.4    König, H.5
  • 28
    • 0036688885 scopus 로고    scopus 로고
    • Diversity of Archaea in hypersaline environments characterized by molecular-phylogentic and cultivation studies
    • Ochsenreiter T, Pfeifer F, Schleper C (2002). Diversity of Archaea in hypersaline environments characterized by molecular-phylogentic and cultivation studies. Extremophiles 6: 267-274.
    • (2002) Extremophiles , vol.6 , pp. 267-274
    • Ochsenreiter, T.1    Pfeifer, F.2    Schleper, C.3
  • 29
    • 0031012499 scopus 로고    scopus 로고
    • Proposed minimal standards for description of new taxa in the order Halobacteriales
    • Oren A, Ventosa A, Grant WD (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int. J. Syst. Bacteriol. 47: 233-238.
    • (1997) Int. J. Syst. Bacteriol , vol.47 , pp. 233-238
    • Oren, A.1    Ventosa, A.2    Grant, W.D.3
  • 30
    • 4644232773 scopus 로고    scopus 로고
    • Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods
    • Rees HC, Grant WD, Jones BE, Heaphy S (2004) Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods. Extremophiles 8: 63-71.
    • (2004) Extremophiles , vol.8 , pp. 63-71
    • Rees, H.C.1    Grant, W.D.2    Jones, B.E.3    Heaphy, S.4
  • 33
    • 0000491381 scopus 로고
    • Natronobacterium gen. nov. and Natronococcus gen. nov., two new genera of haloalkaliphilic archaeabacteria
    • Tindall BJ, Ross HNM, Grant WD (1984). Natronobacterium gen. nov. and Natronococcus gen. nov., two new genera of haloalkaliphilic archaeabacteria. Syst. Appl. Microbiol. 5: 41-57.
    • (1984) Syst. Appl. Microbiol , vol.5 , pp. 41-57
    • Tindall, B.J.1    Ross, H.N.M.2    Grant, W.D.3
  • 34
    • 33744494542 scopus 로고    scopus 로고
    • Geochemical mapping of carbonate sediments in the Makgadikgadi Basin, Botswana, using Moderate Resolution Remote Sensing Data
    • White KH, Eckardt FD (2006). Geochemical mapping of carbonate sediments in the Makgadikgadi Basin, Botswana, using Moderate Resolution Remote Sensing Data. Earth Surf. Proc. Land 31: 665-681.
    • (2006) Earth Surf. Proc. Land , vol.31 , pp. 665-681
    • White, K.H.1    Eckardt, F.D.2
  • 35
    • 33745289445 scopus 로고    scopus 로고
    • Phylogenetic relationships within the order Halobacteriales inferred from 16S rRNA gene sequences
    • Wright A-DG (2006). Phylogenetic relationships within the order Halobacteriales inferred from 16S rRNA gene sequences. In J. Syst Evol. Microbiol. 56: 1223-1227.
    • (2006) In J. Syst Evol. Microbiol , vol.56 , pp. 1223-1227
    • Wright, A.-D.G.1
  • 36
    • 0034807809 scopus 로고    scopus 로고
    • Xu Y, Wang Z, Xue Y, Zhou P, Ma Y, Ventosa A, Grant WD (2001). Natrialba hulunbeirensis sp. nov. and Natrialba chahannaoensis sp. nov., novel haloalkaliphilic archaea from soda lakes in Inner Mongolia autonomous region, China. Int. J. Syst. Evol. Microbiol. 51: 1693-1698.
    • Xu Y, Wang Z, Xue Y, Zhou P, Ma Y, Ventosa A, Grant WD (2001). Natrialba hulunbeirensis sp. nov. and Natrialba chahannaoensis sp. nov., novel haloalkaliphilic archaea from soda lakes in Inner Mongolia autonomous region, China. Int. J. Syst. Evol. Microbiol. 51: 1693-1698.
  • 37
    • 34548684807 scopus 로고    scopus 로고
    • Culturable halophilic archaeal diversity of Ayakekumu salt lake located in Xinjiang, China
    • Xu X, Wu M, Wu Y, Zhang H, (2007). Culturable halophilic archaeal diversity of Ayakekumu salt lake located in Xinjiang, China. Acta Ecologica Sinica 27: 3119-3123.
    • (2007) Acta Ecologica Sinica , vol.27 , pp. 3119-3123
    • Xu, X.1    Wu, M.2    Wu, Y.3    Zhang, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.