-
1
-
-
12244283992
-
Economics of ribosome biosynthesis
-
Warner, J. R.; Vilardell, J.; Sohn, J. H. Economics of ribosome biosynthesis Cold Spring Harbor Symp. Quant. Biol. 2001, 66, 567-574 (Pubitemid 36097963)
-
(2001)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.66
, pp. 567-574
-
-
Warner, J.R.1
Vilardell, J.2
Sohn, J.H.3
-
2
-
-
34250377197
-
The weird and wonderful world of bacterial ribosome regulation
-
DOI 10.1080/10409230701360843, PII 779479355
-
Wilson, D. N.; Nierhaus, K. H. The weird and wonderful world of bacterial ribosome regulation Crit. Rev. Biochem. Mol. Biol. 2007, 42, 187-219 (Pubitemid 46911961)
-
(2007)
Critical Reviews in Biochemistry and Molecular Biology
, vol.42
, Issue.3
, pp. 187-219
-
-
Wilson, D.N.1
Nierhaus, K.H.2
-
3
-
-
34548728025
-
Ribosome biogenesis and the translation process in Escherichia coli
-
DOI 10.1128/MMBR.00013-07
-
Kaczanowska, M.; Ryden-Aulin, M. Ribosome biogenesis and the translation process in Escherichia coli Microbiol. Mol. Biol. Rev. 2007, 71, 477-494 (Pubitemid 47429282)
-
(2007)
Microbiology and Molecular Biology Reviews
, vol.71
, Issue.3
, pp. 477-494
-
-
Kaczanowska, M.1
Ryden-Aulin, M.2
-
4
-
-
57549118722
-
RNA folding and ribosome assembly
-
Woodson, S. A. RNA folding and ribosome assembly Curr. Opin. Chem. Biol. 2008, 12, 667-673
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 667-673
-
-
Woodson, S.A.1
-
5
-
-
44949210279
-
Biophysical studies of bacterial ribosome assembly
-
Williamson, J. R. Biophysical studies of bacterial ribosome assembly Curr. Opin. Struct. Biol. 2008, 18, 299-304
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 299-304
-
-
Williamson, J.R.1
-
6
-
-
0016153699
-
Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies
-
Held, W. A.; Ballou, B.; Mizushima, S.; Nomura, M. Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies J. Biol. Chem. 1974, 249, 3103-3111
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 3103-3111
-
-
Held, W.A.1
Ballou, B.2
Mizushima, S.3
Nomura, M.4
-
7
-
-
0024344098
-
RNA-protein interactions in 30S ribosomal subunits: Folding and function of 16S rRNA
-
Stern, S.; Powers, T.; Changchien, L. M.; Noller, H. F. RNA-protein interactions in 30S ribosomal subunits: Folding and function of 16S rRNA Science 1989, 244, 783-790 (Pubitemid 19164701)
-
(1989)
Science
, vol.244
, Issue.4906
, pp. 783-790
-
-
Stern, S.1
Powers, T.2
Changchien, L.-M.3
Noller, H.F.4
-
8
-
-
77955787630
-
Advances in RNA structure analysis by chemical probing
-
Weeks, K. M. Advances in RNA structure analysis by chemical probing Curr. Opin. Struct. Biol. 2010, 20, 295-304
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 295-304
-
-
Weeks, K.M.1
-
9
-
-
16244389281
-
Mapping nucleic acid structure by hydroxyl radical cleavage
-
DOI 10.1016/j.cbpa.2005.02.009, Bioorganic Chemistry / Biocatalysis and Biotransformation
-
Tullius, T. D.; Greenbaum, J. A. Mapping nucleic acid structure by hydroxyl radical cleavage Curr. Opin. Chem. Biol. 2005, 9, 127-134 (Pubitemid 40462483)
-
(2005)
Current Opinion in Chemical Biology
, vol.9
, Issue.2
, pp. 127-134
-
-
Tullius, T.D.1
Greenbaum, J.A.2
-
10
-
-
0024359787
-
Defining the inside and outside of a catalytic RNA molecule
-
Latham, J. A.; Cech, T. R. Defining the inside and outside of a catalytic RNA molecule Science 1989, 245, 276-282 (Pubitemid 19196644)
-
(1989)
Science
, vol.245
, Issue.4915
, pp. 276-282
-
-
Latham, J.A.1
Cech, T.R.2
-
11
-
-
0029806242
-
Quantitative kinetics footprinting of protein-DNA association reactions
-
DOI 10.1016/S0076-6879(96)74038-7
-
Hsieh, M.; Brenowitz, M. Quantitative kinetics footprinting of protein-DNA association reactions Methods Enzymol. 1996, 274, 478-492 (Pubitemid 26353098)
-
(1996)
Methods in Enzymology
, vol.274
, pp. 478-492
-
-
Hsieh, M.1
Brenowitz, M.2
-
12
-
-
0033644180
-
Time-resolved synchroton X-ray footprinting and its application to RNA folding
-
Ralston, C. Y.; Sclavi, B.; Sullivan, M.; Deras, M. L.; Woodson, S. A.; Chance, M. R.; Brenowitz, M. Time-resolved synchrotron X-ray footprinting and its application to RNA folding Methods Enzymol. 2000, 317, 353-368 (Pubitemid 30418095)
-
(2000)
Methods in Enzymology
, vol.317
, pp. 353-368
-
-
Ralston, C.Y.1
Sclavi, B.2
Sullivan, M.3
Deras, M.L.4
Woodson, S.A.5
Chance, M.R.6
Brenowitz, M.7
-
13
-
-
35448978228
-
Following molecular transitions with single residue spatial and millisecond time resolution
-
Shcherbakova, I.; Mitra, S.; Beer, R. H.; Brenowitz, M. Following molecular transitions with single residue spatial and millisecond time resolution Methods Cell Biol. 2008, 84, 589-615
-
(2008)
Methods Cell Biol.
, vol.84
, pp. 589-615
-
-
Shcherbakova, I.1
Mitra, S.2
Beer, R.H.3
Brenowitz, M.4
-
14
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
DOI 10.1126/science.279.5358.1940
-
Sclavi, B.; Sullivan, M.; Chance, M. R.; Brenowitz, M.; Woodson, S. A. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting Science 1998, 279, 1940-1943 (Pubitemid 28168649)
-
(1998)
Science
, vol.279
, Issue.5358
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
15
-
-
0027991626
-
Kinetic intermediates in RNA folding
-
Zarrinkar, P. P.; Williamson, J. R. Kinetic intermediates in RNA folding Science 1994, 265, 918-924 (Pubitemid 24281488)
-
(1994)
Science
, vol.265
, Issue.5174
, pp. 918-924
-
-
Zarrinkar, P.P.1
Williamson, J.R.2
-
16
-
-
0029874598
-
The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding
-
DOI 10.1038/nsb0596-432
-
Zarrinkar, P. P.; Williamson, J. R. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding Nat. Struct. Biol. 1996, 3, 432-438 (Pubitemid 26139442)
-
(1996)
Nature Structural Biology
, vol.3
, Issue.5
, pp. 432-438
-
-
Zarrinkar, P.P.1
Williamson, J.R.2
-
17
-
-
0032563297
-
Folding intermediates of a self-splicing RNA: Mispairing of the catalytic core
-
DOI 10.1006/jmbi.1998.1901
-
Pan, J.; Woodson, S. A. Folding intermediates of a self-splicing RNA: Mispairing of the catalytic core J. Mol. Biol. 1998, 280, 597-609 (Pubitemid 28336368)
-
(1998)
Journal of Molecular Biology
, vol.280
, Issue.4
, pp. 597-609
-
-
Pan, J.1
Woodson, S.A.2
-
18
-
-
0033544723
-
The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA
-
DOI 10.1006/jmbi.1999.3298
-
Pan, J.; Woodson, S. A. The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA J. Mol. Biol. 1999, 294, 955-965 (Pubitemid 30000387)
-
(1999)
Journal of Molecular Biology
, vol.294
, Issue.4
, pp. 955-965
-
-
Pan, J.1
Woodson, S.A.2
-
19
-
-
0037039464
-
Exploring the folding landscape of a structured RNA
-
DOI 10.1073/pnas.221593598
-
Russell, R.; Zhuang, X.; Babcock, H. P.; Millett, I. S.; Doniach, S.; Chu, S.; Herschlag, D. Exploring the folding landscape of a structured RNA Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 155-160 (Pubitemid 34060333)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.1
, pp. 155-160
-
-
Russell, R.1
Zhuang, X.2
Babcock, H.P.3
Millett, I.S.4
Doniach, S.5
Chu, S.6
Herschlag, D.7
-
20
-
-
0032549735
-
Kinetic intermediates trapped by native interactions in RNA folding
-
DOI 10.1126/science.279.5358.1943
-
Treiber, D. K.; Rook, M. S.; Zarrinkar, P. P.; Williamson, J. R. Kinetic intermediates trapped by native interactions in RNA folding Science 1998, 279, 1943-1946 (Pubitemid 28168650)
-
(1998)
Science
, vol.279
, Issue.5358
, pp. 1943-1946
-
-
Treiber, D.K.1
Rook, M.S.2
Zarrinkar, P.P.3
Williamson, J.R.4
-
21
-
-
0031576334
-
Folding of RNA involves parallel pathways
-
DOI 10.1006/jmbi.1997.1311
-
Pan, J.; Thirumalai, D.; Woodson, S. A. Folding of RNA involves parallel pathways J. Mol. Biol. 1997, 273, 7-13 (Pubitemid 27460208)
-
(1997)
Journal of Molecular Biology
, vol.273
, Issue.1
, pp. 7-13
-
-
Pan, J.1
Thirumalai, D.2
Woodson, S.A.3
-
22
-
-
0034674420
-
A single-molecule study of RNA catalysis and folding
-
DOI 10.1126/science.288.5473.2048
-
Zhuang, X.; Bartley, L. E.; Babcock, H. P.; Russell, R.; Ha, T.; Herschlag, D.; Chu, S. A single-molecule study of RNA catalysis and folding Science 2000, 288, 2048-2051 (Pubitemid 30397686)
-
(2000)
Science
, vol.288
, Issue.5473
, pp. 2048-2051
-
-
Zhuang, X.1
Bartley, L.E.2
Babcock, H.P.3
Russell, R.4
Ha, T.5
Herschlag, D.6
Chu, S.7
-
23
-
-
0034635353
-
Fast folding of a ribozyme by stabilizing core interactions: Evidence for multiple folding pathways in RNA
-
Pan, J.; Deras, M. L.; Woodson, S. A. Fast folding of a ribozyme by stabilizing core interactions: Evidence for multiple folding pathways in RNA J. Mol. Biol. 2000, 296, 133-144
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 133-144
-
-
Pan, J.1
Deras, M.L.2
Woodson, S.A.3
-
24
-
-
0001103473
-
Kinetics of folding of protein and RNA
-
Thirumalai, D.; Woodson, S. A. Kinetics of folding of protein and RNA Acc. Chem. Res. 1996, 29, 433-439
-
(1996)
Acc. Chem. Res.
, vol.29
, pp. 433-439
-
-
Thirumalai, D.1
Woodson, S.A.2
-
25
-
-
33646089899
-
Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule
-
Laederach, A.; Shcherbakova, I.; Liang, M. P.; Brenowitz, M.; Altman, R. B. Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule J. Mol. Biol. 2006, 358, 1179-1190
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1179-1190
-
-
Laederach, A.1
Shcherbakova, I.2
Liang, M.P.3
Brenowitz, M.4
Altman, R.B.5
-
26
-
-
0037007009
-
Rapid compaction during RNA folding
-
DOI 10.1073/pnas.072589599
-
Russell, R.; Millett, I. S.; Tate, M. W.; Kwok, L. W.; Nakatani, B.; Gruner, S. M.; Mochrie, S. G.; Pande, V.; Doniach, S.; Herschlag, D.; Pollack, L. Rapid compaction during RNA folding Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 4266-4271 (Pubitemid 34285975)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.7
, pp. 4266-4271
-
-
Russell, R.1
Millett, I.S.2
Tate, M.W.3
Kwok, L.W.4
Nakatani, B.5
Gruner, S.M.6
Mochrie, S.G.J.7
Pande, V.8
Doniach, S.9
Herschlag, D.10
Pollack, L.11
-
27
-
-
0032590020
-
Mg2+-dependent folding of a large ribozyme without kinetic traps
-
Fang, X. W.; Pan, T.; Sosnick, T. R. Mg2+-dependent folding of a large ribozyme without kinetic traps Nat. Struct. Biol. 1999, 6, 1091-1095
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1091-1095
-
-
Fang, X.W.1
Pan, T.2
Sosnick, T.R.3
-
28
-
-
77955815291
-
Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering
-
Roh, J. H.; Guo, L.; Kilburn, J. D.; Briber, R. M.; Irving, T.; Woodson, S. A. Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering J. Am. Chem. Soc. 2010, 132, 10148-10154
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 10148-10154
-
-
Roh, J.H.1
Guo, L.2
Kilburn, J.D.3
Briber, R.M.4
Irving, T.5
Woodson, S.A.6
-
29
-
-
77952896659
-
Compact intermediates in RNA folding
-
Woodson, S. A. Compact intermediates in RNA folding Annu. Rev. Biophys. 2010, 39, 61-77
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 61-77
-
-
Woodson, S.A.1
-
30
-
-
44149086117
-
Hinge stiffness is a barrier to RNA folding
-
Schlatterer, J. C.; Kwok, L. W.; Lamb, J. S.; Park, H. Y.; Andresen, K.; Brenowitz, M.; Pollack, L. Hinge stiffness is a barrier to RNA folding J. Mol. Biol. 2008, 379, 859-870
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 859-870
-
-
Schlatterer, J.C.1
Kwok, L.W.2
Lamb, J.S.3
Park, H.Y.4
Andresen, K.5
Brenowitz, M.6
Pollack, L.7
-
31
-
-
0037165996
-
Correlating structural dynamics and function in single ribozyme molecules
-
DOI 10.1126/science.1069013
-
Zhuang, X.; Kim, H.; Pereira, M. J.; Babcock, H. P.; Walter, N. G.; Chu, S. Correlating structural dynamics and function in single ribozyme molecules Science 2002, 296, 1473-1476 (Pubitemid 34553093)
-
(2002)
Science
, vol.296
, Issue.5572
, pp. 1473-1476
-
-
Zhuang, X.1
Kim, H.2
Pereira, M.J.B.3
Babcock, H.P.4
Walter, N.G.5
Chu, S.6
-
32
-
-
0033529972
-
Ligand-induced conformational changes observed in single RNA molecules
-
DOI 10.1073/pnas.96.16.9077
-
Ha, T.; Zhuang, X.; Kim, H. D.; Orr, J. W.; Williamson, J. R.; Chu, S. Ligand-induced conformational changes observed in single RNA molecules Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9077-9082 (Pubitemid 29374710)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.16
, pp. 9077-9082
-
-
Ha, T.1
Zhuang, X.2
Kim, H.D.3
Orr, J.W.4
Williamson, J.R.5
Chu, S.6
-
33
-
-
0035156627
-
A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex
-
DOI 10.1038/84124
-
Webb, A. E.; Weeks, K. M. A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex Nat. Struct. Biol. 2001, 8, 135-140 (Pubitemid 32116065)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.2
, pp. 135-140
-
-
Webb, A.E.1
Weeks, K.M.2
-
34
-
-
38649085954
-
Tertiary interactions determine the accuracy of RNA folding
-
DOI 10.1021/ja076166i
-
Chauhan, S.; Woodson, S. A. Tertiary interactions determine the accuracy of RNA folding J. Am. Chem. Soc. 2008, 130, 1296-1303 (Pubitemid 351171008)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.4
, pp. 1296-1303
-
-
Chauhan, S.1
Woodson, S.A.2
-
35
-
-
0001873853
-
Reconstitution of ribosomes: Studies of ribosome structure, function, and assembly
-
In; Nomura, M. Tissieres, A. Lengyel, P. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY
-
Nomura, M.; Held, W. A.: Reconstitution of ribosomes: Studies of ribosome structure, function, and assembly. In Ribosomes; Nomura, M.; Tissieres, A.; Lengyel, P., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 1974; pp 193-223.
-
(1974)
Ribosomes
, pp. 193-223
-
-
Nomura, M.1
Held, W.A.2
-
36
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly, B. T.; Brodersen, D. E.; Clemons, W. M., Jr.; Morgan-Warren, R. J.; Carter, A. P.; Vonrhein, C.; Hartsch, T.; Ramakrishnan, V. Structure of the 30S ribosomal subunit Nature 2000, 407, 327-339
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
37
-
-
0030606880
-
Interaction of the bacillus stearothermophilus ribosomal protein s15 with 16 S rRNA: I. Defining the minimal RNA site
-
DOI 10.1006/jmbi.1996.0481
-
Batey, R. T.; Williamson, J. R. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site J. Mol. Biol. 1996, 261, 536-549 (Pubitemid 26335945)
-
(1996)
Journal of Molecular Biology
, vol.261
, Issue.4
, pp. 536-549
-
-
Batey, R.T.1
Williamson, J.R.2
-
38
-
-
0034615759
-
Structure of the S15,S6,S18-rRNA complex: Assembly of the 30S ribosome central domain
-
Agalarov, S. C.; Sridhar Prasad, G.; Funke, P. M.; Stout, C. D.; Williamson, J. R. Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain Science 2000, 288, 107-113
-
(2000)
Science
, vol.288
, pp. 107-113
-
-
Agalarov, S.C.1
Sridhar Prasad, G.2
Funke, P.M.3
Stout, C.D.4
Williamson, J.R.5
-
39
-
-
7444239630
-
RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex
-
DOI 10.1016/j.jmb.2004.09.009, PII S0022283604011374
-
Recht, M. I.; Williamson, J. R. RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex J. Mol. Biol. 2004, 344, 395-407 (Pubitemid 39441212)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.2
, pp. 395-407
-
-
Recht, M.I.1
Williamson, J.R.2
-
40
-
-
55249084867
-
Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly
-
Adilakshmi, T.; Bellur, D. L.; Woodson, S. A. Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly Nature 2008, 455, 1268-1272
-
(2008)
Nature
, vol.455
, pp. 1268-1272
-
-
Adilakshmi, T.1
Bellur, D.L.2
Woodson, S.A.3
-
41
-
-
28444479853
-
An assembly landscape for the 3OS ribosomal subunit
-
DOI 10.1038/nature04261
-
Talkington, M. W.; Siuzdak, G.; Williamson, J. R. An assembly landscape for the 30S ribosomal subunit Nature 2005, 438, 628-632 (Pubitemid 41740567)
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 628-632
-
-
Talkington, M.W.T.1
Siuzdak, G.2
Williamson, J.R.3
-
42
-
-
0742322957
-
Mapping structural differences between 30S ribosomal subunit assembly intermediates
-
DOI 10.1038/nsmb719
-
Holmes, K. L.; Culver, G. M. Mapping structural differences between 30S ribosomal subunit assembly intermediates Nat. Struct. Mol. Biol. 2004, 11, 179-186 (Pubitemid 38146522)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.2
, pp. 179-186
-
-
Holmes, K.L.1
Culver, G.M.2
-
43
-
-
67449128217
-
The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli
-
Kitahara, K.; Suzuki, T. The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli Mol. Cell 2009, 34, 760-766
-
(2009)
Mol. Cell
, vol.34
, pp. 760-766
-
-
Kitahara, K.1
Suzuki, T.2
-
44
-
-
0027171312
-
Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits
-
DOI 10.1006/jmbi.1993.1396
-
Powers, T.; Daubresse, G.; Noller, H. F. Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits J. Mol. Biol. 1993, 232, 362-374 (Pubitemid 23251165)
-
(1993)
Journal of Molecular Biology
, vol.232
, Issue.2
, pp. 362-374
-
-
Powers, T.1
Daubresse, G.2
Noller, H.F.3
-
45
-
-
77950410654
-
Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape
-
Bunner, A. E.; Beck, A. H.; Williamson, J. R. Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 5417-5422
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 5417-5422
-
-
Bunner, A.E.1
Beck, A.H.2
Williamson, J.R.3
-
46
-
-
22544466402
-
Protein-independent folding pathway of the 16 S rRNA 5′ domain
-
DOI 10.1016/j.jmb.2005.06.020, PII S0022283605006704
-
Adilakshmi, T.; Ramaswamy, P.; Woodson, S. A. Protein-independent folding pathway of the 16S rRNA 5′ domain J. Mol. Biol. 2005, 351, 508-519 (Pubitemid 41021937)
-
(2005)
Journal of Molecular Biology
, vol.351
, Issue.3
, pp. 508-519
-
-
Adilakshmi, T.1
Ramaswamy, P.2
Woodson, S.A.3
-
47
-
-
77957318549
-
Differential assembly of 16S rRNA domains during 30S subunit formation
-
Xu, Z.; Culver, G. M. Differential assembly of 16S rRNA domains during 30S subunit formation RNA 2010, 16, 1990-2001
-
(2010)
RNA
, vol.16
, pp. 1990-2001
-
-
Xu, Z.1
Culver, G.M.2
-
48
-
-
78049406997
-
Visualizing ribosome biogenesis: Parallel assembly pathways for the 30S subunit
-
Mulder, A. M.; Yoshioka, C.; Beck, A. H.; Bunner, A. E.; Milligan, R. A.; Potter, C. S.; Carragher, B.; Williamson, J. R. Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit Science 2010, 330, 673-677
-
(2010)
Science
, vol.330
, pp. 673-677
-
-
Mulder, A.M.1
Yoshioka, C.2
Beck, A.H.3
Bunner, A.E.4
Milligan, R.A.5
Potter, C.S.6
Carragher, B.7
Williamson, J.R.8
-
49
-
-
0034619497
-
Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy
-
Sayers, E. W.; Gerstner, R. B.; Draper, D. E.; Torchia, D. A. Structural preordering in the N-terminal region of ribosomal protein S4 revealed by heteronuclear NMR spectroscopy Biochemistry 2000, 39, 13602-13613
-
(2000)
Biochemistry
, vol.39
, pp. 13602-13613
-
-
Sayers, E.W.1
Gerstner, R.B.2
Draper, D.E.3
Torchia, D.A.4
-
50
-
-
0035933312
-
Protein-dependent transition states for ribonucleoprotein assembly
-
DOI 10.1006/jmbi.2001.4714
-
Webb, A. E.; Rose, M. A.; Westhof, E.; Weeks, K. M. Protein-dependent transition states for ribonucleoprotein assembly J. Mol. Biol. 2001, 309, 1087-1100 (Pubitemid 32623310)
-
(2001)
Journal of Molecular Biology
, vol.309
, Issue.5
, pp. 1087-1100
-
-
Webb, A.E.1
Rose, M.A.2
Westhof, E.3
Weeks, K.M.4
-
51
-
-
33746793263
-
Two Distinct Binding Modes of a Protein Cofactor with its Target RNA
-
DOI 10.1016/j.jmb.2006.06.048, PII S0022283606007765
-
Bokinsky, G.; Nivon, L. G.; Liu, S.; Chai, G.; Hong, M.; Weeks, K. M.; Zhuang, X. Two distinct binding modes of a protein cofactor with its target RNA J. Mol. Biol. 2006, 361, 771-784 (Pubitemid 44175382)
-
(2006)
Journal of Molecular Biology
, vol.361
, Issue.4
, pp. 771-784
-
-
Bokinsky, G.1
Nivon, L.G.2
Liu, S.3
Chai, G.4
Hong, M.5
Weeks, K.M.6
Zhuang, X.7
-
52
-
-
0028884596
-
Cotranscriptional splicing of a group i intron is facilitated by the Cbp2 protein
-
Lewin, A. S.; Thomas, J., Jr.; Tirupati, H. K. Cotranscriptional splicing of a group I intron is facilitated by the Cbp2 protein Mol. Cell. Biol. 1995, 15, 6971-6978
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 6971-6978
-
-
Lewin, A.S.1
Thomas Jr., J.2
Tirupati, H.K.3
-
53
-
-
77951170511
-
Induced fit or conformational selection for RNA/U1A folding
-
Qin, F.; Chen, Y.; Wu, M.; Li, Y.; Zhang, J.; Chen, H. F. Induced fit or conformational selection for RNA/U1A folding RNA 2010, 16, 1053-1061
-
(2010)
RNA
, vol.16
, pp. 1053-1061
-
-
Qin, F.1
Chen, Y.2
Wu, M.3
Li, Y.4
Zhang, J.5
Chen, H.F.6
-
54
-
-
0035877589
-
Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA
-
Katsamba, P. S.; Myszka, D. G.; Laird-Offringa, I. A. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA J. Biol. Chem. 2001, 276, 21476-21481
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21476-21481
-
-
Katsamba, P.S.1
Myszka, D.G.2
Laird-Offringa, I.A.3
-
55
-
-
0024292371
-
Interaction of proteins S16, S17, and S20 with 16 S ribosomal RNA
-
Stern, S.; Changchien, L. M.; Craven, G. R.; Noller, H. F. Interaction of proteins S16, S17, and S20 with 16 S ribosomal RNA J. Mol. Biol. 1988, 200, 291-299
-
(1988)
J. Mol. Biol.
, vol.200
, pp. 291-299
-
-
Stern, S.1
Changchien, L.M.2
Craven, G.R.3
Noller, H.F.4
-
56
-
-
0027532926
-
Chemical evidence for domain assembly of the Escherichia coli 30S ribosome
-
Weitzmann, C. J.; Cunningham, P. R.; Nurse, K.; Ofengand, J. Chemical evidence for domain assembly of the Escherichia coli 30S ribosome FASEB J. 1993, 7, 177-180 (Pubitemid 23034031)
-
(1993)
FASEB Journal
, vol.7
, Issue.1
, pp. 177-180
-
-
Weitzmann, C.J.1
Cunningham, P.R.2
Nurse, K.3
Ofengand, J.4
-
57
-
-
0036303417
-
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
-
DOI 10.1006/jmbi.2001.5359
-
Brodersen, D. E.; Clemons, W. M., Jr.; Carter, A. P.; Wimberly, B. T.; Ramakrishnan, V. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA J. Mol. Biol. 2002, 316, 725-768 (Pubitemid 34729252)
-
(2002)
Journal of Molecular Biology
, vol.316
, Issue.3
, pp. 725-768
-
-
Brodersen, D.E.1
Clemons Jr., W.M.2
Carter, A.P.3
Wimberly, B.T.4
Ramakrishnan, V.5
-
58
-
-
64049105734
-
S16 throws a conformational switch during assembly of 30S 5′ domain
-
Ramaswamy, P.; Woodson, S. A. S16 throws a conformational switch during assembly of 30S 5′ domain Nat. Struct. Mol. Biol. 2009, 16, 438-445
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 438-445
-
-
Ramaswamy, P.1
Woodson, S.A.2
-
59
-
-
69349099213
-
Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20
-
Ramaswamy, P.; Woodson, S. A. Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20 J. Mol. Biol. 2009, 392, 666-677
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 666-677
-
-
Ramaswamy, P.1
Woodson, S.A.2
-
60
-
-
0029869019
-
A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core
-
DOI 10.1006/jmbi.1996.0182
-
Caprara, M. G.; Mohr, G.; Lambowitz, A. M. A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core J. Mol. Biol. 1996, 257, 512-531 (Pubitemid 26107219)
-
(1996)
Journal of Molecular Biology
, vol.257
, Issue.3
, pp. 512-531
-
-
Caprara, M.G.1
Mohr, G.2
Lambowitz, A.M.3
-
61
-
-
0029155840
-
Protein facilitation of group i intron splicing by assembly of the catalytic core and the 5′ splice site domain
-
Weeks, K. M.; Cech, T. R. Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5′ splice site domain Cell 1995, 82, 221-230
-
(1995)
Cell
, vol.82
, pp. 221-230
-
-
Weeks, K.M.1
Cech, T.R.2
-
62
-
-
0034635354
-
Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using disulfide-linked EDTA-Fe
-
Biswas, R.; Ledman, D. W.; Fox, R. O.; Altman, S.; Gopalan, V. Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using disulfide-linked EDTA-Fe J. Mol. Biol. 2000, 296, 19-31
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 19-31
-
-
Biswas, R.1
Ledman, D.W.2
Fox, R.O.3
Altman, S.4
Gopalan, V.5
-
63
-
-
3943099373
-
Structural insights into the signal recognition particle
-
DOI 10.1146/annurev.biochem.73.011303.074048
-
Doudna, J. A.; Batey, R. T. Structural insights into the signal recognition particle Annu. Rev. Biochem. 2004, 73, 539-557 (Pubitemid 39050379)
-
(2004)
Annual Review of Biochemistry
, vol.73
, pp. 539-557
-
-
Doudna, J.A.1
Batey, R.T.2
-
64
-
-
33847009925
-
Protein-induced Conformational Changes of RNA During the Assembly of Human Signal Recognition Particle
-
DOI 10.1016/j.jmb.2006.12.056, PII S0022283606017463
-
Menichelli, E.; Isel, C.; Oubridge, C.; Nagai, K. Protein-induced conformational changes of RNA during the assembly of human signal recognition particle J. Mol. Biol. 2007, 367, 187-203 (Pubitemid 46274718)
-
(2007)
Journal of Molecular Biology
, vol.367
, Issue.1
, pp. 187-203
-
-
Menichelli, E.1
Isel, C.2
Oubridge, C.3
Nagai, K.4
-
65
-
-
33947494652
-
Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein
-
DOI 10.1038/nature05600, PII NATURE05600
-
Stone, M. D.; Mihalusova, M.; O'Connor C, M.; Prathapam, R.; Collins, K.; Zhuang, X. Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein Nature 2007, 446, 458-461 (Pubitemid 46474596)
-
(2007)
Nature
, vol.446
, Issue.7134
, pp. 458-461
-
-
Stone, M.D.1
Mihalusova, M.2
O'Connor, C.M.3
Prathapam, R.4
Collins, K.5
Zhuang, X.6
-
66
-
-
0025737972
-
A functional pseudoknot in 16S ribosomal RNA
-
Powers, T.; Noller, H. F. A functional pseudoknot in 16S ribosomal RNA EMBO J. 1991, 10, 2203-2214 (Pubitemid 21905693)
-
(1991)
EMBO Journal
, vol.10
, Issue.8
, pp. 2203-2214
-
-
Powers, T.1
Noller, H.F.2
-
67
-
-
0016607629
-
Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes
-
Lindahl, L. Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes J. Mol. Biol. 1975, 92, 15-37
-
(1975)
J. Mol. Biol.
, vol.92
, pp. 15-37
-
-
Lindahl, L.1
-
68
-
-
65549161515
-
Deconstructing ribosome construction
-
Connolly, K.; Culver, G. Deconstructing ribosome construction Trends Biochem. Sci. 2009, 34, 256-263
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 256-263
-
-
Connolly, K.1
Culver, G.2
-
69
-
-
39049131090
-
RNA chaperones, RNA annealers, and RNA helicases
-
Rajkowitsch, L.; Chen, D.; Stampfl, S.; Semrad, K.; Waldsich, C.; Mayer, O.; Jantsch, M. F.; Konrat, R.; Blasi, U.; Schroeder, R. RNA chaperones, RNA annealers, and RNA helicases RNA Biol. 2007, 4, 118-130
-
(2007)
RNA Biol.
, vol.4
, pp. 118-130
-
-
Rajkowitsch, L.1
Chen, D.2
Stampfl, S.3
Semrad, K.4
Waldsich, C.5
Mayer, O.6
Jantsch, M.F.7
Konrat, R.8
Blasi, U.9
Schroeder, R.10
-
70
-
-
0036342369
-
The DnaK chaperone system facilitates 30S ribosomal subunit assembly
-
DOI 10.1016/S1097-2765(02)00562-2
-
Maki, J. A.; Schnobrich, D. J.; Culver, G. M. The DnaK chaperone system facilitates 30S ribosomal subunit assembly Mol. Cell 2002, 10, 129-138 (Pubitemid 34876567)
-
(2002)
Molecular Cell
, vol.10
, Issue.1
, pp. 129-138
-
-
Maki, J.A.1
Schnobrich, D.J.2
Culver, G.M.3
-
71
-
-
58449101336
-
Ribosome biogenesis is temperature-dependent and delayed in Escherichia coli lacking the chaperones DnaK or DnaJ
-
Al Refaii, A.; Alix, J. H. Ribosome biogenesis is temperature-dependent and delayed in Escherichia coli lacking the chaperones DnaK or DnaJ Mol. Microbiol. 2009, 71, 748-762
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 748-762
-
-
Al Refaii, A.1
Alix, J.H.2
-
72
-
-
70349301461
-
Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis
-
Tu, C.; Zhou, X.; Tropea, J. E.; Austin, B. P.; Waugh, D. S.; Court, D. L.; Ji, X. Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 14843-14848
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 14843-14848
-
-
Tu, C.1
Zhou, X.2
Tropea, J.E.3
Austin, B.P.4
Waugh, D.S.5
Court, D.L.6
Ji, X.7
-
73
-
-
79952996835
-
Understanding ribosome assembly: The structure of in vivo assembled immature 30S subunits revealed by cryo-electron microscopy
-
Jomaa, A.; Stewart, G.; Martin-Benito, J.; Zielke, R.; Campbell, T. L.; Maddock, J. R.; Brown, E. D.; Ortega, J. Understanding ribosome assembly: The structure of in vivo assembled immature 30S subunits revealed by cryo-electron microscopy RNA 2011, 17, 697-709
-
(2011)
RNA
, vol.17
, pp. 697-709
-
-
Jomaa, A.1
Stewart, G.2
Martin-Benito, J.3
Zielke, R.4
Campbell, T.L.5
Maddock, J.R.6
Brown, E.D.7
Ortega, J.8
-
74
-
-
78650899879
-
RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis
-
Goto, S.; Kato, S.; Kimura, T.; Muto, A.; Himeno, H. RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis EMBO J. 2011, 30, 104-114
-
(2011)
EMBO J.
, vol.30
, pp. 104-114
-
-
Goto, S.1
Kato, S.2
Kimura, T.3
Muto, A.4
Himeno, H.5
-
75
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 Å resolution
-
DOI 10.1126/science.1117230
-
Schuwirth, B. S.; Borovinskaya, M. A.; Hau, C. W.; Zhang, W.; Vila-Sanjurjo, A.; Holton, J. M.; Cate, J. H. Structures of the bacterial ribosome at 3.5 A resolution Science 2005, 310, 827-834 (Pubitemid 41567336)
-
(2005)
Science
, vol.310
, Issue.5749
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.D.7
|