메뉴 건너뛰기




Volumn 344, Issue 2, 2004, Pages 395-407

RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex

Author keywords

cooperativity; isothermal titration calorimetry; ribonucleoprotein complex; rRNA; thermodynamics

Indexed keywords

BINDING PROTEIN; DIMER; RIBONUCLEOPROTEIN; RIBOSOME PROTEIN; RIBOSOME RNA; RNA;

EID: 7444239630     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.09.009     Document Type: Article
Times cited : (53)

References (33)
  • 1
    • 49949127070 scopus 로고
    • Structure and function of Escherichia coli ribosomes. I. Partial fractionation of the functionally active ribosomal proteins and reconstitution of artificial subribosomal particles
    • P. Traub, and M. Nomura Structure and function of Escherichia coli ribosomes. I. Partial fractionation of the functionally active ribosomal proteins and reconstitution of artificial subribosomal particles J. Mol. Biol. 34 1968 575 593
    • (1968) J. Mol. Biol. , vol.34 , pp. 575-593
    • Traub, P.1    Nomura, M.2
  • 2
    • 0014266752 scopus 로고
    • Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins
    • P. Traub, and M. Nomura Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins Proc. Natl Acad. Sci. USA 59 1968 777 784
    • (1968) Proc. Natl Acad. Sci. USA , vol.59 , pp. 777-784
    • Traub, P.1    Nomura, M.2
  • 4
    • 0015901113 scopus 로고
    • Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components
    • W.A. Held, S. Mizushima, and M. Nomura Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components J. Biol. Chem. 248 1973 5720 5730
    • (1973) J. Biol. Chem. , vol.248 , pp. 5720-5730
    • Held, W.A.1    Mizushima, S.2    Nomura, M.3
  • 5
    • 36949051443 scopus 로고
    • Assembly mapping of 30S ribosomal proteins from E. coli
    • S. Mizushima, and M. Nomura Assembly mapping of 30S ribosomal proteins from E. coli Nature 226 1970 1214
    • (1970) Nature , vol.226 , pp. 1214
    • Mizushima, S.1    Nomura, M.2
  • 6
    • 0016153699 scopus 로고
    • Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies
    • W.A. Held, B. Ballou, S. Mizushima, and M. Nomura Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies J. Biol. Chem. 249 1974 3103 3111
    • (1974) J. Biol. Chem. , vol.249 , pp. 3103-3111
    • Held, W.A.1    Ballou, B.2    Mizushima, S.3    Nomura, M.4
  • 8
    • 0027532926 scopus 로고
    • Chemical evidence for domain assembly of the Escherichia coli 30S ribosome
    • C.J. Weitzmann, P.R. Cunningham, K. Nurse, and J. Ofengand Chemical evidence for domain assembly of the Escherichia coli 30S ribosome FASEB J. 7 1993 177 180
    • (1993) FASEB J. , vol.7 , pp. 177-180
    • Weitzmann, C.J.1    Cunningham, P.R.2    Nurse, K.3    Ofengand, J.4
  • 9
    • 0027979072 scopus 로고
    • Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA
    • R.R. Samaha, B. O'Brien, T.W. O'Brien, and H.F. Noller Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA Proc. Natl Acad. Sci. USA 91 1994 7884 7888
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7884-7888
    • Samaha, R.R.1    O'Brien, B.2    O'Brien, T.W.3    Noller, H.F.4
  • 11
    • 0024344098 scopus 로고
    • RNA-protein interactions in 30S ribosomal subunits: Folding and function of 16S rRNA
    • S. Stern, T. Powers, L.-M. Changchien, and H.F. Noller RNA-protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA Science 244 1989 783 790
    • (1989) Science , vol.244 , pp. 783-790
    • Stern, S.1    Powers, T.2    Changchien, L.-M.3    Noller, H.F.4
  • 12
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA
    • T. Powers, and H.F. Noller Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA RNA 1 1995 194 209
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 14
    • 0034268836 scopus 로고    scopus 로고
    • Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
    • F. Schluenzen, A. Tocilj, R. Zarivach, J. Harms, M. Gluehmann, and D. Janell Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution Cell 102 2000 615 623
    • (2000) Cell , vol.102 , pp. 615-623
    • Schluenzen, F.1    Tocilj, A.2    Zarivach, R.3    Harms, J.4    Gluehmann, M.5    Janell, D.6
  • 16
    • 0036303417 scopus 로고    scopus 로고
    • Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
    • D.E. Brodersen, W.M. Clemons Jr, A.P. Carter, B.T. Wimberly, and V. Ramakrishnan Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA J. Mol. Biol. 316 2002 725 768
    • (2002) J. Mol. Biol. , vol.316 , pp. 725-768
    • Brodersen, D.E.1    Clemons Jr., W.M.2    Carter, A.P.3    Wimberly, B.T.4    Ramakrishnan, V.5
  • 17
    • 0034065972 scopus 로고    scopus 로고
    • A hierarchy of RNA subdomains in assembly of the central domain of the 30 S ribosomal subunit
    • S.C. Agalarov, and J.R. Williamson A hierarchy of RNA subdomains in assembly of the central domain of the 30 S ribosomal subunit RNA 6 2000 402 408
    • (2000) RNA , vol.6 , pp. 402-408
    • Agalarov, S.C.1    Williamson, J.R.2
  • 18
    • 0035850733 scopus 로고    scopus 로고
    • Central domain assembly: Thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex
    • M.I. Recht, and J.R. Williamson Central domain assembly: thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex J. Mol. Biol. 313 2001 35 48
    • (2001) J. Mol. Biol. , vol.313 , pp. 35-48
    • Recht, M.I.1    Williamson, J.R.2
  • 19
    • 0030606880 scopus 로고    scopus 로고
    • Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site
    • R.T. Batey, and J.R. Williamson Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site J. Mol. Biol. 261 1996 536 549
    • (1996) J. Mol. Biol. , vol.261 , pp. 536-549
    • Batey, R.T.1    Williamson, J.R.2
  • 20
    • 0031856886 scopus 로고    scopus 로고
    • Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15
    • R.T. Batey, and J.R. Williamson Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15 RNA 4 1998 984 997
    • (1998) RNA , vol.4 , pp. 984-997
    • Batey, R.T.1    Williamson, J.R.2
  • 21
    • 0032559410 scopus 로고    scopus 로고
    • Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA
    • J.W. Orr, P.J. Hagerman, and J.R. Williamson Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA J. Mol. Biol. 275 1998 453 464
    • (1998) J. Mol. Biol. , vol.275 , pp. 453-464
    • Orr, J.W.1    Hagerman, P.J.2    Williamson, J.R.3
  • 22
    • 0014722597 scopus 로고
    • Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: A ubiquitous property of water
    • R. Lumry, and S. Rajender Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: a ubiquitous property of water Biopolymers 9 1970 1125 1227
    • (1970) Biopolymers , vol.9 , pp. 1125-1227
    • Lumry, R.1    Rajender, S.2
  • 23
    • 0029395478 scopus 로고
    • Win some, lose some: Enthalpy-entropy compensation in weak intermolecular interactions
    • J.D. Dunitz Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions Chem. Biol. 2 1995 709 712
    • (1995) Chem. Biol. , vol.2 , pp. 709-712
    • Dunitz, J.D.1
  • 24
    • 0031552366 scopus 로고    scopus 로고
    • Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation
    • C. Frisch, G. Schreiber, C.M. Johnson, and A.R. Fersht Thermodynamics of the interaction of barnase and barstar: changes in free energy versus changes in enthalpy on mutation J. Mol. Biol. 267 1997 696 706
    • (1997) J. Mol. Biol. , vol.267 , pp. 696-706
    • Frisch, C.1    Schreiber, G.2    Johnson, C.M.3    Fersht, A.R.4
  • 25
    • 0034615759 scopus 로고    scopus 로고
    • Structure of the S15,S6,S18-rRNA complex: Assembly of the 30S ribosome central domain
    • S.C. Agalarov, G. Sridhar Prasad, P.M. Funke, C.D. Stout, and J.R. Williamson Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain Science 288 2000 107 113
    • (2000) Science , vol.288 , pp. 107-113
    • Agalarov, S.C.1    Sridhar Prasad, G.2    Funke, P.M.3    Stout, C.D.4    Williamson, J.R.5
  • 26
    • 0023053359 scopus 로고
    • Binding of Escherichia coli ribosomal protein S8 to 16S rRNA: Kinetic and thermodynamic characterization
    • M. Mougel, B. Ehresmann, and C. Ehresmann Binding of Escherichia coli ribosomal protein S8 to 16S rRNA: kinetic and thermodynamic characterization Biochemistry 25 1986 2756 2765
    • (1986) Biochemistry , vol.25 , pp. 2756-2765
    • Mougel, M.1    Ehresmann, B.2    Ehresmann, C.3
  • 27
    • 0042063940 scopus 로고    scopus 로고
    • Affinity of ribosomal protein S8 from mesophilic and (hyper)thermophilic archaea and bacteria for 16S rRNA correlates with the growth temperatures of the organisms
    • T. Gruber, C. Kohrer, B. Lung, D. Shcherbakov, and W. Piendl Affinity of ribosomal protein S8 from mesophilic and (hyper)thermophilic archaea and bacteria for 16S rRNA correlates with the growth temperatures of the organisms FEBS Letters 549 2003 123 128
    • (2003) FEBS Letters , vol.549 , pp. 123-128
    • Gruber, T.1    Kohrer, C.2    Lung, B.3    Shcherbakov, D.4    Piendl, W.5
  • 28
    • 0016861480 scopus 로고
    • Escherichia coli 30 S ribosomal proteins uniquely required for assembly
    • W.A. Held, and M. Nomura Escherichia coli 30 S ribosomal proteins uniquely required for assembly J. Biol. Chem. 250 1975 3179 3184
    • (1975) J. Biol. Chem. , vol.250 , pp. 3179-3184
    • Held, W.A.1    Nomura, M.2
  • 29
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • S.C. Gill, and P.H. von Hippel Calculation of protein extinction coefficients from amino acid sequence data Anal. Biochem. 182 1989 319 326
    • (1989) Anal. Biochem. , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 30
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • T. Wiseman, S. Williston, J.F. Brandts, and L.N. Lin Rapid measurement of binding constants and heats of binding using a new titration calorimeter Anal. Biochem. 179 1989 131 137
    • (1989) Anal. Biochem. , vol.179 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.N.4
  • 31
    • 0032319019 scopus 로고    scopus 로고
    • Theoretical aspects of isothermal titration calorimetry
    • L. Indyk, and H.F. Fisher Theoretical aspects of isothermal titration calorimetry Methods Enzymol. 295 1998 350 364
    • (1998) Methods Enzymol. , vol.295 , pp. 350-364
    • Indyk, L.1    Fisher, H.F.2
  • 32
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, and Y. Du The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinformatics 3 2002 2
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 33
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction
    • J.J. Cannone, S. Subramanian, M.N. Schnare, J.R. Collett, L.M. D'Souza, and Y. Du The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: correction BMC Bioinformatics 3 2002 15
    • (2002) BMC Bioinformatics , vol.3 , pp. 15
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.