메뉴 건너뛰기




Volumn 51, Issue 10, 2011, Pages 2560-2572

Combined 3D-QSAR, molecular docking, and molecular dynamics study on piperazinyl-glutamate-pyridines/pyrimidines as potent P2Y12 antagonists for inhibition of platelet aggregation

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULAR DYNAMICS; MOLECULAR MODELING; PLATELETS; PYRIDINE; STATISTICAL METHODS;

EID: 80054907298     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci2002878     Document Type: Article
Times cited : (25)

References (77)
  • 1
    • 3042718111 scopus 로고    scopus 로고
    • Atherothrombosis: A widespread disease with unpredictable and life-threatening consequences
    • DOI 10.1016/j.ehj.2004.03.011, PII S0195668X04001708
    • Viles-Gonzalez, J. F.; Fuster, V.; Badimon, J. J. Atherothrombosis: a widespread disease with unpredictable and life-threatening consequences Eur. Heart J. 2004, 25, 1197-1207 (Pubitemid 38891569)
    • (2004) European Heart Journal , vol.25 , Issue.14 , pp. 1197-1207
    • Viles-Gonzalez, J.F.1    Fuster, V.2    Badimon, J.J.3
  • 2
    • 0031794433 scopus 로고    scopus 로고
    • Atherothrombosis: Mechanisms and clinical therapeutic approaches
    • Fuster, V.; Badimon, J. J.; Chesebro, J. H. Atherothrombosis: mechanisms and clinical therapeutic approaches Vasc. Med. 1998, 3, 231-239 (Pubitemid 28553009)
    • (1998) Vascular Medicine , vol.3 , Issue.3 , pp. 231-239
    • Fuster, V.1    Badimon, J.J.2    Chesebro, J.H.3
  • 3
    • 33646405176 scopus 로고    scopus 로고
    • Recent advance in antiplatelet therapy: The mechanisms, evidence and approach to the problems
    • DOI 10.1080/07853890600640657, PII H546180646463
    • Horiuchi, H. Recent advance in antiplatelet therapy: The mechanisms, evidence and approach to the problems Ann. Med. 2006, 38, 162-172 (Pubitemid 43675582)
    • (2006) Annals of Medicine , vol.38 , Issue.3 , pp. 162-172
    • Horiuchi, H.1
  • 4
    • 34248371253 scopus 로고    scopus 로고
    • Clinical aspects of platelet inhibitors and thrombus formation
    • DOI 10.1161/01.RES.0000264509.36234.51, PII 0000301220070511000004
    • Meadows, T.; Bhatt, D. Clinical aspects of platelet inhibitors and thrombus formation Circ. Res. 2007, 100, 1261-1275 (Pubitemid 46742917)
    • (2007) Circulation Research , vol.100 , Issue.9 , pp. 1261-1275
    • Meadows, T.A.1    Bhatt, D.L.2
  • 6
    • 0038649988 scopus 로고    scopus 로고
    • Clopidogrel for coronary stenting: Response variability, drug resistance, and the effect of pretreatment platelet reactivity
    • DOI 10.1161/01.CIR.0000072771.11429.83
    • Gurbel, P.; Bliden, K.; Hiatt, B.; O'Connor, C. Clopidogrel for coronary stenting: response variability, drug resistance, and the effect of pretreatment platelet reactivity Circulation 2003, 107, 2908-2913 (Pubitemid 36736631)
    • (2003) Circulation , vol.107 , Issue.23 , pp. 2908-2913
    • Gurbel, P.A.1    Bliden, K.P.2    Hiatt, B.L.3    O'Connor, C.M.4
  • 7
    • 0034326939 scopus 로고    scopus 로고
    • Formation of occlusive platelet aggregates in whole blood caused by low concentrations of ADP
    • Hall, M. W.; Goodman, P. D.; Solen, K. A.; Mohammad, S. F. Formation of occlusive platelet aggregates in whole blood caused by low concentrations of ADP ASAIO J. 2000, 46, 693-695
    • (2000) ASAIO J. , vol.46 , pp. 693-695
    • Hall, M.W.1    Goodman, P.D.2    Solen, K.A.3    Mohammad, S.F.4
  • 9
    • 0031916728 scopus 로고    scopus 로고
    • Molecular basis for ADP-induced platelet activation: II. The P2Y1 receptor mediates ADP-induced intracellular calcium mobilization and shape change in platelets
    • DOI 10.1074/jbc.273.4.2030
    • Jin, J.; Daniel, J. L.; Kunapuli, S. P. Molecular basis for ADP-induced platelet activation. II: the P2Y1 receptor mediates ADP-induced intracellular calcium mobilization and shape change in platelets J. Biol. Chem. 1998, 273, 2030-2034 (Pubitemid 28069249)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.4 , pp. 2030-2034
    • Jin, J.1    Daniel, J.L.2    Kunapuli, S.P.3
  • 12
    • 3242792729 scopus 로고    scopus 로고
    • Structural bioinformatics and its impact to biomedical science
    • Chou, K. C. Structural bioinformatics and its impact to biomedical science Curr. Med. Chem. 2004, 11, 2105-2134
    • (2004) Curr. Med. Chem. , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 13
    • 6044234752 scopus 로고    scopus 로고
    • Architecture of P2Y nucleotide receptors: Structural comparison based on sequence analysis, mutagenesis, and homology modeling
    • DOI 10.1021/jm049914c
    • Costanzi, S.; Mamedova, L.; Gao, Z. G.; Jacobson, K. A. Architecture of P2Y nucleotide receptors: structural comparison based on sequence analysis, mutagenesis, and homology modeling J. Med. Chem. 2004, 47, 5393-5404 (Pubitemid 39382789)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.22 , pp. 5393-5404
    • Costanzi, S.1    Mamedova, L.2    Gao, Z.-G.3    Jacobson, K.A.4
  • 15
    • 36849074168 scopus 로고    scopus 로고
    • Prasugrel: A novel thienopyridine antiplatelet agent. A review of preclinical and clinical studies and the mechanistic basis for its distinct antiplatelet profile
    • DOI 10.1111/j.1527-3466.2007.00027.x
    • Jakubowski, J. A.; Winters, K. J.; Naganuma, H.; Wallentin, L. Prasugrel: a novel thienopyridine antiplatelet agent. A review of preclinical and clinical studies and the mechanistic basis for its distinct antiplatelet profile Cardiovasc. Drug Rev. 2007, 25, 357-374 (Pubitemid 350233359)
    • (2007) Cardiovascular Drug Reviews , vol.25 , Issue.4 , pp. 357-374
    • Jakubowski, J.A.1    Winters, K.J.2    Naganuma, H.3    Wallentin, L.4
  • 16
    • 0030590746 scopus 로고    scopus 로고
    • A randomised, blinded, trial of clopidogrel versus aspirin in patients at risk of ischaemic events (CAPRIE)
    • Clement, D. A randomised, blinded, trial of clopidogrel versus aspirin in patients at risk of ischaemic events (CAPRIE) Lancet 1996, 348, 1329-1338
    • (1996) Lancet , vol.348 , pp. 1329-1338
    • Clement, D.1
  • 18
    • 70450187946 scopus 로고    scopus 로고
    • Cangrelor: A review on its mechanism of action and clinical development
    • Ferreiro, J. L.; Ueno, M.; Angiolillo, D. J. Cangrelor: a review on its mechanism of action and clinical development Expert Rev. Cardiovasc. Ther. 2009, 7, 1195-1201
    • (2009) Expert Rev. Cardiovasc. Ther. , vol.7 , pp. 1195-1201
    • Ferreiro, J.L.1    Ueno, M.2    Angiolillo, D.J.3
  • 19
    • 0038177945 scopus 로고    scopus 로고
    • 12
    • DOI 10.1016/S0028-3908(03)00142-4
    • 12 receptor antagonists reveal pharmacological identity between the rat brain Gi-linked ADP receptors and P2Y12 Neuropharmacology 2003, 45, 145-154 (Pubitemid 36695018)
    • (2003) Neuropharmacology , vol.45 , Issue.1 , pp. 145-154
    • Vasiljev, K.S.1    Uri, A.2    Laitinen, J.T.3
  • 31
    • 20444403742 scopus 로고    scopus 로고
    • Classification of substrates and inhibitors of P-glycoprotein using unsupervised machine learning approach
    • DOI 10.1021/ci050041k
    • Wang, Y.; Li, Y.; Yang, S.; Yang, L. Classification of substrates and inhibitors of P-glycoprotein using unsupervised machine learning approach J. Chem. Inf. Model. 2005, 45, 750-757 (Pubitemid 40795178)
    • (2005) Journal of Chemical Information and Modeling , vol.45 , Issue.3 , pp. 750-757
    • Wang, Y.-H.1    Li, Y.2    Yang, S.-L.3    Yang, L.4
  • 32
    • 76049083233 scopus 로고    scopus 로고
    • Understanding the aquatic toxicity of pesticide: Structure-activity relationship and molecular descriptors to distinguish the ratings of toxicity
    • Wang, G.; Li, Y.; Liu, X.; Wang, Y. Understanding the aquatic toxicity of pesticide: structure-activity relationship and molecular descriptors to distinguish the ratings of toxicity QSAR Comb. Sci. 2009, 28, 1418-1431
    • (2009) QSAR Comb. Sci. , vol.28 , pp. 1418-1431
    • Wang, G.1    Li, Y.2    Liu, X.3    Wang, Y.4
  • 33
    • 79952456642 scopus 로고    scopus 로고
    • Dynamic communication between androgen and coactivator: Mutually induced conformational perturbations in androgen receptor ligand-binding domain
    • Xu, X.; Yang, W.; Wang, X.; Li, Y.; Wang, Y.; Ai, C. Dynamic communication between androgen and coactivator: Mutually induced conformational perturbations in androgen receptor ligand-binding domain Proteins: Struct., Funct., Bioinf. 2011, 79, 1154-1171
    • (2011) Proteins: Struct., Funct., Bioinf. , vol.79 , pp. 1154-1171
    • Xu, X.1    Yang, W.2    Wang, X.3    Li, Y.4    Wang, Y.5    Ai, C.6
  • 34
    • 78049314237 scopus 로고    scopus 로고
    • Mechanism of MicroRNA-Target Interaction: Molecular Dynamics Simulations and Thermodynamics Analysis
    • Wang, Y.; Li, Y.; Ma, Z.; Yang, W.; Ai, C. Mechanism of MicroRNA-Target Interaction: Molecular Dynamics Simulations and Thermodynamics Analysis PLoS Comput. Biol. 2010, 6, e1000866
    • (2010) PLoS Comput. Biol. , vol.6 , pp. 1000866
    • Wang, Y.1    Li, Y.2    Ma, Z.3    Yang, W.4    Ai, C.5
  • 35
    • 77955650684 scopus 로고    scopus 로고
    • Studies of benzothiadiazine derivatives as hepatitis C virus NS5B polymerase inhibitors using 3D-QSAR, molecular docking and molecular dynamics
    • Wang, X.; Yang, W.; Xu, X.; Zhang, H.; Li, Y.; Wang, Y. Studies of benzothiadiazine derivatives as hepatitis C virus NS5B polymerase inhibitors using 3D-QSAR, molecular docking and molecular dynamics Curr. Med. Chem. 2010, 17, 2788-2803
    • (2010) Curr. Med. Chem. , vol.17 , pp. 2788-2803
    • Wang, X.1    Yang, W.2    Xu, X.3    Zhang, H.4    Li, Y.5    Wang, Y.6
  • 36
    • 22144463182 scopus 로고    scopus 로고
    • An in silico approach for screening flavonoids as P-glycoprotein inhibitors based on a Bayesian-regularized neural network
    • DOI 10.1007/s10822-005-3321-5
    • Wang, Y. H.; Li, Y.; Yang, S. L.; Yang, L. An in silico approach for screening flavonoids as P-glycoprotein inhibitors based on a Bayesian-regularized neural network J. Comput.-Aided Mol. Des. 2005, 19, 137-147 (Pubitemid 40974003)
    • (2005) Journal of Computer-Aided Molecular Design , vol.19 , Issue.3 , pp. 137-147
    • Wang, Y.-H.1    Li, Y.2    Yang, S.-L.3    Yang, L.4
  • 37
    • 1842639123 scopus 로고    scopus 로고
    • A universal molecular descriptor system for prediction of logP, logS, logBB, and absorption
    • Sun, H. A universal molecular descriptor system for prediction of logP, logS, logBB, and absorption J. Chem. Inf. Comput. Sci. 2004, 44, 748-757
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 748-757
    • Sun, H.1
  • 38
    • 4043086954 scopus 로고    scopus 로고
    • Prediction of Chemical Carcinogenicity from Molecular Structure
    • Sun, H. Prediction of Chemical Carcinogenicity from Molecular Structure J. Chem. Inf. Comput. Sci. 2004, 44, 1506-1514
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1506-1514
    • Sun, H.1
  • 39
    • 44349144497 scopus 로고    scopus 로고
    • Pharmacophore-based virtual screening
    • DOI 10.2174/092986708784049630
    • Sun, H. Pharmacophore-based virtual screening Curr. Med. Chem. 2008, 15, 1018-1024 (Pubitemid 351736404)
    • (2008) Current Medicinal Chemistry , vol.15 , Issue.10 , pp. 1018-1024
    • Sun, H.1
  • 40
    • 25844519676 scopus 로고    scopus 로고
    • 12 receptors by in silico and in vitro methods
    • DOI 10.1016/j.bbrc.2005.09.052, PII S0006291X05020619
    • Nonaka, Y.; Hiramoto, T.; Fujita, N. Identification of endogenous surrogate ligands for human P2Y12 receptors by in silico and in vitro methods Biochem. Biophys. Res. Commun. 2005, 337, 281-288 (Pubitemid 41393791)
    • (2005) Biochemical and Biophysical Research Communications , vol.337 , Issue.1 , pp. 281-288
    • Nonaka, Y.1    Hiramoto, T.2    Fujita, N.3
  • 43
    • 79952623168 scopus 로고    scopus 로고
    • 12 antagonists using a novel genetic algorithm-support vector machine coupled approach
    • 12 antagonists using a novel genetic algorithm-support vector machine coupled approach Anal. Chim. Acta 2011, 690, 53-63
    • (2011) Anal. Chim. Acta , vol.690 , pp. 53-63
    • Hao, M.1    Li, Y.2    Wang, Y.3    Zhang, S.4
  • 44
    • 66449087108 scopus 로고    scopus 로고
    • A segmented principal component analysis-regression approach to quantitative structure-activity relationship modeling
    • Hemmateenejad, B.; Elyasi, M. A segmented principal component analysis-regression approach to quantitative structure-activity relationship modeling Anal. Chim. Acta 2009, 646, 30-38
    • (2009) Anal. Chim. Acta , vol.646 , pp. 30-38
    • Hemmateenejad, B.1    Elyasi, M.2
  • 45
    • 77949983264 scopus 로고    scopus 로고
    • Comparative QSAR studies on toxicity of phenol derivatives using quantum topological molecular similarity indices
    • Hemmateenejad, B.; Mehdipour, A. R.; Miri, R.; Shamsipur, M. Comparative QSAR studies on toxicity of phenol derivatives using quantum topological molecular similarity indices Chem. Biol. Drug Des. 2010, 75, 521-531
    • (2010) Chem. Biol. Drug Des. , vol.75 , pp. 521-531
    • Hemmateenejad, B.1    Mehdipour, A.R.2    Miri, R.3    Shamsipur, M.4
  • 46
    • 35349025499 scopus 로고    scopus 로고
    • Exploring QSAR for the inhibitory activity of a large set of aromatic/heterocyclic sulfonamides toward four different isoenzymes of carbonic anhydrase
    • DOI 10.1002/qsar.200730010
    • Hemmateenejad, B.; Miri, R.; Jafarpour, M.; Tabarzad, M.; Shamsipur, M. Exploring QSAR for the inhibitory activity of a large set of aromatic/heterocyclic sulfonamides toward four different isoenzymes of carbonic anhydrase QSAR Comb. Sci. 2007, 26, 1065-1075 (Pubitemid 47612804)
    • (2007) QSAR and Combinatorial Science , vol.26 , Issue.10 , pp. 1065-1075
    • Hemmateenejad, B.1    Miri, R.2    Jafarpour, M.3    Tabarzad, M.4    Shamsipur, M.5
  • 47
    • 77951621176 scopus 로고    scopus 로고
    • max of 1,4-naphthoquinone derivatives using ant colony optimization
    • max of 1,4-naphthoquinone derivatives using ant colony optimization Anal. Chim. Acta 2010, 663, 7-10
    • (2010) Anal. Chim. Acta , vol.663 , pp. 7-10
    • Atabati, M.1    Zarei, K.2    Mohsennia, M.3
  • 48
    • 62549113413 scopus 로고    scopus 로고
    • QSAR model for predicting radical scavenging activity of di(hetero)arylamines derivatives of benzo [ b ] thiophenes
    • Abreu, R.; Ferreira, I.; Queiroz, M. QSAR model for predicting radical scavenging activity of di(hetero)arylamines derivatives of benzo [ b ] thiophenes Eur. J. Med. Chem. 2009, 44, 1952-1958
    • (2009) Eur. J. Med. Chem. , vol.44 , pp. 1952-1958
    • Abreu, R.1    Ferreira, I.2    Queiroz, M.3
  • 49
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • Richard, D.; David, E.; Jeffrey, D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins J. Am. Chem. Soc. 1988, 110, 5959-5967
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 5959-5967
    • Richard, D.1    David, E.2    Jeffrey, D.3
  • 50
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • DOI 10.1021/jm00050a010
    • Klebe, G.; Abraham, U.; Mietzner, T. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity J. Med. Chem. 1994, 37, 4130-4146 (Pubitemid 24379702)
    • (1994) Journal of Medicinal Chemistry , vol.37 , Issue.24 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 51
    • 49149147973 scopus 로고
    • Iterative partial equalization of orbital electronegativity-A rapid access to atomic charges
    • Gasteiger, J.; Marsili, M. Iterative partial equalization of orbital electronegativity-a rapid access to atomic charges Tetrahedron 1980, 36, 3219-3228
    • (1980) Tetrahedron , vol.36 , pp. 3219-3228
    • Gasteiger, J.1    Marsili, M.2
  • 52
    • 84988115618 scopus 로고
    • Validation of the general purpose tripos 5.2 force field
    • Clark, M.; Cramer, R., III; Van Opdenbosch, N. Validation of the general purpose tripos 5.2 force field J. Comput. Chem. 1989, 10, 982-1012
    • (1989) J. Comput. Chem. , vol.10 , pp. 982-1012
    • Clark, M.1    Cramer III, R.2    Van Opdenbosch, N.3
  • 53
    • 54249144496 scopus 로고    scopus 로고
    • Combined 3D-QSAR modeling and molecular docking study on indolinone derivatives as inhibitors of 3-phosphoinositide-dependent protein kinase-1
    • AbdulHameed, M. D. M.; Hamza, A.; Liu, J. J.; Zhan, C. G. Combined 3D-QSAR modeling and molecular docking study on indolinone derivatives as inhibitors of 3-phosphoinositide-dependent protein kinase-1 J. Chem. Inf. Model. 2008, 48, 1760-1772
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 1760-1772
    • Abdulhameed, M.D.M.1    Hamza, A.2    Liu, J.J.3    Zhan, C.G.4
  • 54
    • 77950916156 scopus 로고    scopus 로고
    • Development of predictive pharmacophore model for in silico screening, and 3D QSAR CoMFA and CoMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors
    • Murumkar, P. R.; Zambre, V. P.; Yadav, M. R. Development of predictive pharmacophore model for in silico screening, and 3D QSAR CoMFA and CoMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors J. Comput.-Aided Mol. Des. 2010, 24, 143-156
    • (2010) J. Comput.-Aided Mol. Des. , vol.24 , pp. 143-156
    • Murumkar, P.R.1    Zambre, V.P.2    Yadav, M.R.3
  • 55
    • 77349111693 scopus 로고    scopus 로고
    • 3D-QSAR studies on quinazoline antifolate thymidylate synthase inhibitors by CoMFA and CoMSIA models
    • Srivastava, V.; Gupta, S. P.; Siddiqi, M. I.; Mishra, B. N. 3D-QSAR studies on quinazoline antifolate thymidylate synthase inhibitors by CoMFA and CoMSIA models Eur. J. Med. Chem. 2010, 45, 1560-1571
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 1560-1571
    • Srivastava, V.1    Gupta, S.P.2    Siddiqi, M.I.3    Mishra, B.N.4
  • 56
    • 0037434582 scopus 로고    scopus 로고
    • Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine
    • DOI 10.1021/jm020406h
    • Jain, A. N. Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine J. Med. Chem. 2003, 46, 499-511 (Pubitemid 36182752)
    • (2003) Journal of Medicinal Chemistry , vol.46 , Issue.4 , pp. 499-511
    • Jain, A.N.1
  • 57
    • 34247343346 scopus 로고    scopus 로고
    • Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
    • DOI 10.1007/s10822-007-9114-2
    • Jain, A. Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search J. Comput.-Aided Mol. Des. 2007, 21, 281-306 (Pubitemid 46630055)
    • (2007) Journal of Computer-Aided Molecular Design , vol.21 , Issue.5 , pp. 281-306
    • Jain, A.N.1
  • 59
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A package for molecular simulation and trajectory analysis
    • DOI 10.1007/S008940100045
    • Lindahl, E.; Hess, B.; van der Spoel, D. GROMACS 3.0: a package for molecular simulation and trajectory analysis J. Mol. Model. 2001, 7, 306-317 (Pubitemid 36153547)
    • (2001) Journal of Molecular Modeling , vol.7 , Issue.8 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van Der Spoel, D.3
  • 60
    • 0030158429 scopus 로고    scopus 로고
    • PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
    • Aalten, D. M. F.; Bywater, R.; Findlay, J. B. C.; Hendlich, M.; Hooft, R. W. W.; Vriend, G. PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules J. Comput.-Aided Mol. Des. 1996, 10, 255-262 (Pubitemid 126712820)
    • (1996) Journal of Computer-Aided Molecular Design , vol.10 , Issue.3 , pp. 255-262
    • Van Aalten, D.M.F.1
  • 62
    • 0019707626 scopus 로고
    • Polymorphic transitions in single crystals: A new molecular dynamics method
    • DOI 10.1063/1.328693
    • Parrinello, M.; Rahman, A. Polymorphic transitions in single crystals: A new molecular dynamics method J. Appl. Phys. 1981, 52, 7182-7190 (Pubitemid 12456820)
    • (1981) Journal of Applied Physics , vol.52 , Issue.12 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 64
    • 0037157153 scopus 로고    scopus 로고
    • Computational drug design accommodating receptor flexibility: The relaxed complex scheme
    • DOI 10.1021/ja0260162
    • Lin, J.-H.; Perryman, A. L.; Schames, J. R.; McCammon, J. A. Computational drug design accommodating receptor flexibility: The relaxed complex scheme J. Am. Chem. Soc. 2002, 124, 5632-5633 (Pubitemid 34533490)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.20 , pp. 5632-5633
    • Lin, J.-H.1    Perryman, A.L.2    Schames, J.R.3    McCammon, J.A.4
  • 65
    • 0037920567 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
    • DOI 10.1021/jm981062r
    • Böhm, M.; Stürzebecher, J.; Klebe, G. Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa J. Med. Chem. 1999, 42, 458-477 (Pubitemid 29085107)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.3 , pp. 458-477
    • Bohm, M.1    Sturzebecher, J.2    Klebe, G.3
  • 66
    • 0001681052 scopus 로고
    • The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses
    • Wold, S.; Ruhe, A.; Wold, H.; Dunn, W., III The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses SIAM J. Sci. Stat. Comput. 1984, 5, 735-743
    • (1984) SIAM J. Sci. Stat. Comput. , vol.5 , pp. 735-743
    • Wold, S.1    Ruhe, A.2    Wold H.Dunn III, W.3
  • 68
    • 34247885823 scopus 로고    scopus 로고
    • Quantitative structure-retention relationship for the Kovats retention indices of a large set of terpenes: A combined data splitting-feature selection strategy
    • DOI 10.1016/j.aca.2007.04.009, PII S0003267007007052
    • Hemmateenejad, B.; Javadnia, K.; Elyasi, M. Quantitative structure-retention relationship for the Kovats retention indices of a large set of terpenes: A combined data splitting-feature selection strategy Anal. Chim. Acta 2007, 592, 72-81 (Pubitemid 46702097)
    • (2007) Analytica Chimica Acta , vol.592 , Issue.1 , pp. 72-81
    • Hemmateenejad, B.1    Javadnia, K.2    Elyasi, M.3
  • 69
    • 0036589313 scopus 로고    scopus 로고
    • Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection
    • DOI 10.1023/A:1020869118689
    • Golbraikh, A.; Tropsha, A. Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection J. Comput.-Aided Mol. Des. 2002, 16, 357-369 (Pubitemid 35414668)
    • (2002) Journal of Computer-Aided Molecular Design , vol.16 , Issue.5-6 , pp. 357-369
    • Golbraikh, A.1    Tropsha, A.2
  • 70
    • 66149131867 scopus 로고    scopus 로고
    • In silico prediction of androgenic and nonandrogenic compounds using random forest
    • Li, Y.; Wang, Y.; Ding, J.; Wang, Y.; Chang, Y.; Zhang, S. In silico prediction of androgenic and nonandrogenic compounds using random forest QSAR Comb. Sci. 2009, 28, 396-405
    • (2009) QSAR Comb. Sci. , vol.28 , pp. 396-405
    • Li, Y.1    Wang, Y.2    Ding, J.3    Wang, Y.4    Chang, Y.5    Zhang, S.6
  • 71
    • 60549108789 scopus 로고    scopus 로고
    • Classification of bioaccumulative and non-bioaccumulative chemicals using statistical learning approaches
    • Sun, X.; Li, Y.; Liu, X.; Ding, J.; Wang, Y.; Shen, H.; Chang, Y. Classification of bioaccumulative and non-bioaccumulative chemicals using statistical learning approaches Mol. Divers. 2008, 12, 157-169
    • (2008) Mol. Divers. , vol.12 , pp. 157-169
    • Sun, X.1    Li, Y.2    Liu, X.3    Ding, J.4    Wang, Y.5    Shen, H.6    Chang, Y.7
  • 72
    • 0030737774 scopus 로고    scopus 로고
    • Kohonen and counterpropagation artificial neural networks in analytical chemistry
    • DOI 10.1016/S0169-7439(97)00030-0, PII S0169743997000300
    • Zupan, J.; Novič, M.; Ruisánchez, I. Kohonen and counterpropagation artificial neural networks in analytical chemistry Chemom. Intell. Lab. Syst. 1997, 38, 1-23 (Pubitemid 27357375)
    • (1997) Chemometrics and Intelligent Laboratory Systems , vol.38 , Issue.1 , pp. 1-23
    • Zupan, J.1    Novic, M.2    Ruisanchez, I.3
  • 73
    • 34047092770 scopus 로고    scopus 로고
    • 3D-QSAR study of hallucinogenic phenylalkylamines by using CoMFA approach
    • Zhang, Z. Y.; An, L. Y.; Hu, W. X.; Xiang, Y. H. 3D-QSAR study of hallucinogenic phenylalkylamines by using CoMFA approach J. Comput.-Aided Mol. Des. 2007, 21, 145-153
    • (2007) J. Comput.-Aided Mol. Des. , vol.21 , pp. 145-153
    • Zhang, Z.Y.1    An, L.Y.2    Hu, W.X.3    Xiang, Y.H.4
  • 74
    • 0037208267 scopus 로고    scopus 로고
    • 3D QSAR investigations on antimalarial naphthylisoquinoline alkaloids by comparative molecular similarity indices analysis (CoMSIA), based on different alignment approaches
    • Bringmann, G.; Rummey, C. 3D QSAR investigations on antimalarial naphthylisoquinoline alkaloids by comparative molecular similarity indices analysis (CoMSIA), based on different alignment approaches J. Chem. Inf. Comput. Sci. 2003, 43, 304-316
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 304-316
    • Bringmann, G.1    Rummey, C.2
  • 76
    • 0001268633 scopus 로고    scopus 로고
    • Outlier detection in multivariate analytical chemical data
    • Egan, W. J.; Morgan, S. L. Outlier detection in multivariate analytical chemical data Anal. Chem. 1998, 70, 2372-2379
    • (1998) Anal. Chem. , vol.70 , pp. 2372-2379
    • Egan, W.J.1    Morgan, S.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.