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Volumn 5, Issue 6, 2003, Pages 441-452

Diversity and dynamics of microbial communities in soils from agro-ecosystems

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA;

EID: 0038009298     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2003.00404.x     Document Type: Article
Times cited : (255)

References (55)
  • 1
    • 0032965908 scopus 로고    scopus 로고
    • The effects of overgrazing on soil microbial community and fertility in the Chaco dry savannas of Argentina
    • Abril, A., and Bucher, E.H. (1999) The effects of overgrazing on soil microbial community and fertility in the Chaco dry savannas of Argentina. Appl Soil Ecol 12: 159-167.
    • (1999) Appl Soil Ecol , vol.12 , pp. 159-167
    • Abril, A.1    Bucher, E.H.2
  • 2
    • 0343550310 scopus 로고    scopus 로고
    • Impact of crop management on intraspecific diversity of Pseudomonas corrugata in bulk soil
    • Achouak, W., Thiery, J.M., Roubaud, P., and Heulin, T. (2000) Impact of crop management on intraspecific diversity of Pseudomonas corrugata in bulk soil. FEMS Microbial Ecol 31: 11-19.
    • (2000) FEMS Microbial Ecol , vol.31 , pp. 11-19
    • Achouak, W.1    Thiery, J.M.2    Roubaud, P.3    Heulin, T.4
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0032936017 scopus 로고    scopus 로고
    • Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands
    • Bardgett, R.D., Lovell, R.D., Hobbs, P.J., and Jarvis, S.C. (1999) Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biol Biochem 31: 1021-1030.
    • (1999) Soil Biol Biochem , vol.31 , pp. 1021-1030
    • Bardgett, R.D.1    Lovell, R.D.2    Hobbs, P.J.3    Jarvis, S.C.4
  • 5
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution of the bacterial Kingdom Acidobacteria in the environment
    • Barns, S.M., Takala, S.L., and Kuske, C.R. (1999) Wide distribution of the bacterial Kingdom Acidobacteria in the environment. Appl Environ Microbiol 65: 1731-1737.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 6
    • 0031864898 scopus 로고    scopus 로고
    • Determinants of soil microbial communities: Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
    • Bossio, D.A., Scow, K.M., Gunapala, N., and Graham, K.J. (1998) Determinants of soil microbial communities: Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microbial Ecol 36: 1-12.
    • (1998) Microbial Ecol , vol.36 , pp. 1-12
    • Bossio, D.A.1    Scow, K.M.2    Gunapala, N.3    Graham, K.J.4
  • 7
    • 0033730070 scopus 로고    scopus 로고
    • Patterns of diversity in plant and soil microbial communities along a productivity gradient in a Michigan old-field
    • Broughton, L.C., and Gross, K.L. (2000) Patterns of diversity in plant and soil microbial communities along a productivity gradient in a Michigan old-field. Oecologia 125: 420-427.
    • (2000) Oecologia , vol.125 , pp. 420-427
    • Broughton, L.C.1    Gross, K.L.2
  • 8
    • 0033015223 scopus 로고    scopus 로고
    • Comparitive diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M.A., Stephen, J.R., Kowalchuck, G.A., Prosser, J.I., and Paul, E.A. (1999) Comparitive diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl Environ Microbiol 65: 2994-3000.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuck, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 9
    • 0037764639 scopus 로고    scopus 로고
    • Exploring the diversity of soil - A microbial rainforest
    • Staley, J.T., and Reysenbach, A.L. (eds). New York: Wiley-Liss
    • Buckley, D.H., and Schmidt, T.M. (2001a) Exploring the diversity of soil - a microbial rainforest. In Biodiversity of Microbial Life: Foundation of Earth's Biosphere. Staley, J.T., and Reysenbach, A.L. (eds). New York: Wiley-Liss, pp. 183-208.
    • (2001) Biodiversity of Microbial Life: Foundation of Earth's Biosphere , pp. 183-208
    • Buckley, D.H.1    Schmidt, T.M.2
  • 10
    • 0034898780 scopus 로고    scopus 로고
    • The structure of microbial communities in soil and the lasting impact of cultivation
    • Buckley, D.H., and Schmidt, T.M. (2001b) The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecol 42: 11-21.
    • (2001) Microbial Ecol , vol.42 , pp. 11-21
    • Buckley, D.H.1    Schmidt, T.M.2
  • 11
    • 0035019465 scopus 로고    scopus 로고
    • Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil
    • Buckley, D.H., and Schmidt, T.M. (2001c) Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil. FEMS Microbiol Ecol 35: 105-112.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 105-112
    • Buckley, D.H.1    Schmidt, T.M.2
  • 12
    • 0031733317 scopus 로고    scopus 로고
    • Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
    • Buckley, D.H., Graber, J.R., and Schmidt, T.M. (1998) Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl Environ Microbiol 64: 4333-4339.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4333-4339
    • Buckley, D.H.1    Graber, J.R.2    Schmidt, T.M.3
  • 14
    • 0033939308 scopus 로고    scopus 로고
    • The functional significance of denitrifier community composition in a terrestrial ecosystem
    • Cavigelli, M.A., and Robertson, G.P. (2000) The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology 81: 1402-1414.
    • (2000) Ecology , vol.81 , pp. 1402-1414
    • Cavigelli, M.A.1    Robertson, G.P.2
  • 15
    • 0029474334 scopus 로고
    • Fatty Acid Methyl Ester (F.A.M.E.) profiles as measures of soil microbial community structure
    • Collins, H.P., Robertson, G.P., and Klug, M.J. (eds). Boston: Kluwer Academic Publishers
    • Cavigelli, M.A., Robertson, G.P., and Klug, M.J. (1995) Fatty Acid Methyl Ester (F.A.M.E.) profiles as measures of soil microbial community structure. InThe significance and regulation of soil biodiversity. Collins, H.P., Robertson, G.P., and Klug, M.J. (eds). Boston: Kluwer Academic Publishers, pp. 99-113.
    • (1995) The Significance and Regulation of Soil Biodiversity , pp. 99-113
    • Cavigelli, M.A.1    Robertson, G.P.2    Klug, M.J.3
  • 16
    • 0029845048 scopus 로고    scopus 로고
    • Soil microorganisms as controllers of atmospheric trace gasses
    • Conrad, R. (1996) Soil microorganisms as controllers of atmospheric trace gasses. Microbiol Rev 60: 609-640.
    • (1996) Microbiol Rev , vol.60 , pp. 609-640
    • Conrad, R.1
  • 17
    • 0034601498 scopus 로고    scopus 로고
    • Ecology goes underground
    • Copley, J. (2000) Ecology goes underground. Nature 406: 452-454.
    • (2000) Nature , vol.406 , pp. 452-454
    • Copley, J.1
  • 18
    • 0033951888 scopus 로고    scopus 로고
    • Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities
    • Degens, B.P., Schipper, L.A., Sparling, G.P., and Vojvodic-Vukovic, M. (2000) Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities. Soil Biol Biochem 32: 189-196.
    • (2000) Soil Biol Biochem , vol.32 , pp. 189-196
    • Degens, B.P.1    Schipper, L.A.2    Sparling, G.P.3    Vojvodic-Vukovic, M.4
  • 19
    • 0032548085 scopus 로고    scopus 로고
    • Legume-based cropping systems have reduced carbon and nitrogen losses
    • Drinkwater, L.E., Wagoner, P., and Sarrantonio, M. (1998) Legume-based cropping systems have reduced carbon and nitrogen losses. Nature 396: 262-265.
    • (1998) Nature , vol.396 , pp. 262-265
    • Drinkwater, L.E.1    Wagoner, P.2    Sarrantonio, M.3
  • 20
    • 0031791939 scopus 로고    scopus 로고
    • Analysis of the dynamics of bacterial communities in the rhizosphere of the Chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns
    • Duineveld, B.M., Rosado, A.S., van Elsas, J.D., and van Veen, J.A. (1998) Analysis of the dynamics of bacterial communities in the rhizosphere of the Chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns. Appl Environ Microbiol 64: 4950-4957.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4950-4957
    • Duineveld, B.M.1    Rosado, A.S.2    Van Elsas, J.D.3    Van Veen, J.A.4
  • 21
    • 0031811411 scopus 로고    scopus 로고
    • Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soils
    • Felske, A., and Akkermans, A.D.L. (1998) Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soils. Microbial Ecol 36: 31-36.
    • (1998) Microbial Ecol , vol.36 , pp. 31-36
    • Felske, A.1    Akkermans, A.D.L.2
  • 22
    • 0031804722 scopus 로고    scopus 로고
    • High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria
    • Fulthorpe, R.R., Rhodes, A.N., and Tiedje, J.M. (1998) High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria. Appl Environ Microbiol 64: 1620-1627.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1620-1627
    • Fulthorpe, R.R.1    Rhodes, A.N.2    Tiedje, J.M.3
  • 23
    • 0027036276 scopus 로고
    • Microbial biomass responses to seasonal change and imposed drying regimes at increasing depths of undisturbed topsoil profiles
    • van Gestel, M., Ladd, J.N., and Amato, M. (1992) Microbial biomass responses to seasonal change and imposed drying regimes at increasing depths of undisturbed topsoil profiles. Soil Biol Biochem 24: 103-111.
    • (1992) Soil Biol Biochem , vol.24 , pp. 103-111
    • Van Gestel, M.1    Ladd, J.N.2    Amato, M.3
  • 24
    • 0028975287 scopus 로고
    • Spatial variation in nitrogen availability in three successional plant communities
    • Gross, K.L., Pregitzer, K.S., and Burton, A.J. (1995) Spatial variation in nitrogen availability in three successional plant communities. J Ecol 83: 357-367.
    • (1995) J Ecol , vol.83 , pp. 357-367
    • Gross, K.L.1    Pregitzer, K.S.2    Burton, A.J.3
  • 26
    • 0031765004 scopus 로고    scopus 로고
    • Effects of nitrogen addition on successional dynamics and species diversity in Michigan old-fields
    • Huberty, L.E., Gross, K.L., and Miller, C.J. (1998) Effects of nitrogen addition on successional dynamics and species diversity in Michigan old-fields. J Ecol 86: 794-803.
    • (1998) J Ecol , vol.86 , pp. 794-803
    • Huberty, L.E.1    Gross, K.L.2    Miller, C.J.3
  • 27
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B.M., and Pace, N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 28
    • 0032444949 scopus 로고    scopus 로고
    • Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils
    • Ibekwe, A.M., and Kennedy, A.C. (1998) Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils. Plant Soil 206: 151-161.
    • (1998) Plant Soil , vol.206 , pp. 151-161
    • Ibekwe, A.M.1    Kennedy, A.C.2
  • 29
    • 0000847266 scopus 로고
    • Ribosomes and tRNA
    • Neidhardt, F.C. (ed.). Washington, D.C: American Society for Microbiology
    • Jinks-Robertson, S., and Nomura, M. (1987) Ribosomes and tRNA. In Escherichia Coli and Salmonella Typhimurium. Neidhardt, F.C. (ed.). Washington, D.C: American Society for Microbiology, pp. 1358-1385.
    • (1987) Escherichia Coli and Salmonella Typhimurium , pp. 1358-1385
    • Jinks-Robertson, S.1    Nomura, M.2
  • 30
    • 0003108370 scopus 로고
    • Response of microbial communities to changing environmental conditions: Chemical and physiological approaches
    • Guerrero, R., and Pedros-Alio, C. (eds). Barcelona: Spanish Society for Microbiology
    • Klug, M.J., and Tiedje, J.M. (1993) Response of microbial communities to changing environmental conditions: chemical and physiological approaches. In Trends in Microbial Ecology. Guerrero, R., and Pedros-Alio, C. (eds). Barcelona: Spanish Society for Microbiology, pp. 371-374.
    • (1993) Trends in Microbial Ecology , pp. 371-374
    • Klug, M.J.1    Tiedje, J.M.2
  • 31
    • 0033951818 scopus 로고    scopus 로고
    • Dynamics of soil nitrogen and carbon accumulation for 61 years after agricultural abandonment
    • Knops, J.M.H., and Tilman, D. (2000) Dynamics of soil nitrogen and carbon accumulation for 61 years after agricultural abandonment. Ecology 81: 88-98.
    • (2000) Ecology , vol.81 , pp. 88-98
    • Knops, J.M.H.1    Tilman, D.2
  • 33
    • 0031682752 scopus 로고    scopus 로고
    • No evidence of trophic cascades in an experimental microbial-based soil food web
    • Mikola, J., and Setala, H. (1998) No evidence of trophic cascades in an experimental microbial-based soil food web. Ecology 79: 153-164.
    • (1998) Ecology , vol.79 , pp. 153-164
    • Mikola, J.1    Setala, H.2
  • 34
    • 0032784377 scopus 로고    scopus 로고
    • Diversity and field site variation of indigenous populations of soybean bradyrhizobia in Japan by fingerprints with repeated sequences RSα and RSβ
    • Minamisawa, K., Nakatsuka, Y., and Isawa, T. (1999) Diversity and field site variation of indigenous populations of soybean bradyrhizobia in Japan by fingerprints with repeated sequences RSα and RSβ. FEMS Microbiol Ecol 29: 171-178.
    • (1999) FEMS Microbiol Ecol , vol.29 , pp. 171-178
    • Minamisawa, K.1    Nakatsuka, Y.2    Isawa, T.3
  • 36
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: In situ detection of Planctomycetes with 16S rRNA-targeted probes
    • Neef, A., Amann, R., Schlesner, H., and Schleifer, K.H. (1998) Monitoring a widespread bacterial group: in situ detection of Planctomycetes with 16S rRNA-targeted probes. Microbiology-UK 144: 3257-3266.
    • (1998) Microbiology-UK , vol.144 , pp. 3257-3266
    • Neef, A.1    Amann, R.2    Schlesner, H.3    Schleifer, K.H.4
  • 37
    • 0003066510 scopus 로고
    • Studies on the role of ribonucleic acid in the growth of bacteria
    • Neidhardt, F.C., and Magasanik, B. (1960) Studies on the role of ribonucleic acid in the growth of bacteria. Biochimica Biophysica Acta 42: 99-116.
    • (1960) Biochimica Biophysica Acta , vol.42 , pp. 99-116
    • Neidhardt, F.C.1    Magasanik, B.2
  • 38
    • 0032939721 scopus 로고    scopus 로고
    • Ecosystem properties and microbial community changes in primary succession on a glacier forefront
    • Ohtonen, R., Fritze, H., Pennanen, T., Jumpponen, A., and Trapp, J.E. (1999) Ecosystem properties and microbial community changes in primary succession on a glacier forefront. Oecologia 119: 239-246.
    • (1999) Oecologia , vol.119 , pp. 239-246
    • Ohtonen, R.1    Fritze, H.2    Pennanen, T.3    Jumpponen, A.4    Trapp, J.E.5
  • 40
    • 0032875297 scopus 로고    scopus 로고
    • Structure of the microbial communities in coniferous forest soils in relation to the site fertility and strand development stage
    • Pennanen, T., Liski, J., Baath, E., Kitunen, V., Uotila, J., Westman, C.J., and Fritze, H. (1999) Structure of the microbial communities in coniferous forest soils in relation to the site fertility and strand development stage. Microbial Ecol 38: 168-179.
    • (1999) Microbial Ecol , vol.38 , pp. 168-179
    • Pennanen, T.1    Liski, J.2    Baath, E.3    Kitunen, V.4    Uotila, J.5    Westman, C.J.6    Fritze, H.7
  • 41
    • 0024258875 scopus 로고
    • Spatial variability in a successional plant community: Patterns of nitrogen availability
    • Robertson, G.P., Huston, M.A., Evans, F.C., and Tiedje, J.M. (1988) Spatial variability in a successional plant community: patterns of nitrogen availability. Ecology 69: 1517-1524.
    • (1988) Ecology , vol.69 , pp. 1517-1524
    • Robertson, G.P.1    Huston, M.A.2    Evans, F.C.3    Tiedje, J.M.4
  • 42
    • 0027333455 scopus 로고
    • The spatial variability of soil resources following long-term disturbance
    • Robertson, G.P., Crum, J.R., and Ellis, B.G. (1993) The spatial variability of soil resources following long-term disturbance. Oecologia 96: 451-456.
    • (1993) Oecologia , vol.96 , pp. 451-456
    • Robertson, G.P.1    Crum, J.R.2    Ellis, B.G.3
  • 44
    • 0034665720 scopus 로고    scopus 로고
    • Greenhouse gases in intensive agriculture: Contributions of individual gases to the radiative forcing of the atmosphere
    • Robertson, G.P., Paul, E.A., and Harwood, R.R. (2000) Greenhouse gases in intensive agriculture: contributions of individual gases to the radiative forcing of the atmosphere. Science 289: 1922-1925.
    • (2000) Science , vol.289 , pp. 1922-1925
    • Robertson, G.P.1    Paul, E.A.2    Harwood, R.R.3
  • 45
    • 0000980499 scopus 로고
    • Ecosystem consequences of microbial diversity and community structure
    • Chapin, F. S., and Korner, C. (eds). New York: Springer
    • Schimel, J. (1995) Ecosystem consequences of microbial diversity and community structure. In Artic and Alpine Diversity: Patterns, Causes, and Ecosystem Consequences. Chapin, F. S., and Korner, C. (eds). New York: Springer, pp. 241-254.
    • (1995) Artic and Alpine Diversity: Patterns, Causes, and Ecosystem Consequences , pp. 241-254
    • Schimel, J.1
  • 47
    • 0024005650 scopus 로고
    • Use of phylogenetically based probes for studies of ruminal microbial ecology
    • Stahl, D.A., Flesher, B.H., Mansfield, R., and Montgomery, L. (1988) Use of phylogenetically based probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54: 1079-1084.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.H.2    Mansfield, R.3    Montgomery, L.4
  • 48
    • 0033092880 scopus 로고    scopus 로고
    • A generalized rank-order method for nonparametric analysis of data from exercise science: A tutorial
    • Thomas, J.R., Nelson, J.K., and Thomas, K.T. (1999) A generalized rank-order method for nonparametric analysis of data from exercise science: a tutorial. Res Q for Exercise Sport 70: 11-23.
    • (1999) Res Q for Exercise Sport , vol.70 , pp. 11-23
    • Thomas, J.R.1    Nelson, J.K.2    Thomas, K.T.3
  • 50
  • 51
    • 0032743195 scopus 로고    scopus 로고
    • Plant removals in perennial grassland: Vegetation dynamics, decomposer, soil biodiversity, and ecosystem properties
    • Wardle, D.A., Bonner, K.I., Barker, G.M., Yeates, G.W., Nicholson, K.S., Bardgett, R.D., et al. (1999) Plant removals in perennial grassland: vegetation dynamics, decomposer, soil biodiversity, and ecosystem properties. Ecol Monographs 69: 535-568.
    • (1999) Ecol Monographs , vol.69 , pp. 535-568
    • Wardle, D.A.1    Bonner, K.I.2    Barker, G.M.3    Yeates, G.W.4    Nicholson, K.S.5    Bardgett, R.D.6
  • 53
    • 0033987792 scopus 로고    scopus 로고
    • Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
    • Yang, C., and Crowley, D.E. (2000) Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl Environ Microbiol 66: 345-351.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 345-351
    • Yang, C.1    Crowley, D.E.2
  • 54
    • 0028165018 scopus 로고
    • Plant production and soil microorganisms in late-successional ecosystems: A continental-scale study
    • Zak, D.R., Tilman, D., Parmenter, R.P., Rice, C.W., Fisher, F.M., Vose, J., et al. (1994) Plant production and soil microorganisms in late-successional ecosystems: a continental-scale study. Ecology 75: 2333-2347.
    • (1994) Ecology , vol.75 , pp. 2333-2347
    • Zak, D.R.1    Tilman, D.2    Parmenter, R.P.3    Rice, C.W.4    Fisher, F.M.5    Vose, J.6


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