Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses

Applied and Environmental Microbiology

Volumn 65, Issue 2, 1999, Pages 795-801

  Van Hannen, Erik J ^a   Zwart, Gabriel ^a   Van Agterveld, Miranda P ^a   Gons, Herman J ^a   Ebert, Jeannine ^a   Laanbroek, Hendrikus J ^a  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY STRUCTURE; CYANOBACTERIUM; LAKE ECOSYSTEM; LYSIS; MICROBIAL COMMUNITY;

ARTICLE; BACTERIUM COLONY; CYANOBACTERIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; ELECTRON MICROSCOPY; LYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; SPECIES DIFFERENCE; VIRUS PARTICLE;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); CYANOBACTERIA; EUKARYOTA; NEGIBACTERIA; ROTIFERA; SPHINGOBACTERIALES;

EID: 0032975678     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.2.795-801.1999     Document Type: Article

References (57)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Arndt, H. 1993. Rotifers as predators on components of the microbial web (bacteria, heterotrophic flagellates, ciliates) - a review. Hydrobiologia 255/ 256:231-246.
3. Azam, F., T. Fenchel, J. G. Field, J. S. Gray, L. A. Meyer-Reil, and F. Thingstad. 1983. The ecological role of water-column microbes in the sea. Mar. Ecol. Prog. Ser. 10:257-263.
4. Baldi, F., A. Minacci, A. Saliot, L. Mejanelle, P. Mozetic, V. Turk, and A. Malej. 1997. Cell lysis and release of particulate polysaccharides in extensive marine mucilage assessed by lipid biomarkers and molecular probes. Mar. Ecol. Prog. Ser. 153:45-57.
5. Bergh, O., K. Y. Børsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-468.
6. Bird, D. F., and J. Kalff. 1984. Empirical relationships between bacterial abundance and chlorophyll concentrations in fresh and marine waters. Can. J. Fish. Aquat. Sci. 41:1015-1023.
7. Borg, I., and J. Lingoes. 1987. Multidimensional similarity structure analysis. Springer-Verlag, New York, N.Y.
8. Bratbak, G., M. Heldal, S. Norland, and T. F. Thingstad. 1990. Viruses as partners in spring bloom microbial trophodynamics. Appl. Environ. Microbiol. 56:1400-1405.
9. Bratbak, G., M. Heldal, T. F. Thingstad, B. Riemann, and O. H. Haslund. 1992. Incorporation of viruses into the budget of microbial C-transfer. A first approach. Mar. Ecol. Prog. Ser. 83:273-280.
10. Bratbak, G., T. F. Thingstad, and M. Heldal. 1994. Viruses and the microbial loop. Microb. Ecol. 28:209-221.
11. Bremer, P. Unpublished data.
12. Brussaard, C. P. D., R. S. Kempers, A. J. Kop, R. Riegman, and M. Heldal. 1996. Virus-like particles in a summer bloom of Emiliania huxleyi in the North Sea Aquat. Microb. Ecol. 10:105-113.
13. Brussaard, C. P. D., R. Riegman, A. A. M. Noordeloos, G. C. Cadee, H. Witte, A. J. Kop, G. Nieuwland, F. C. Vanduyl, and R. Bak. 1995. Effects of grazing, sedimentation and phytoplankton cell lysis on the structure of a coastal pelagic food web. Mar. Ecol. Prog. Ser. 123:259-271.
14. Christensen, P. J. 1977. The history, biology and taxonomy of the cytophaga group. Can. J. Microbiol. 23:1599-1653.
15. De Rijk, P., and R. De Wachter. 1993. DCSE, an interactive tool for sequence alignment and secondary structure research. Comput. Appl. Biosci. 9:735-740.
16. Egli, T. 1995. The ecological and physiological significance of the growth of heterotrophic microorganisms with mixtures of substrates. Adv. Microb. Ecol. 14:305-386.
17. Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1992. Effect of genome size and rm gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
18. Ferris, M. J., S. C. Nold, N. P. Revsbech, and D. M. Ward. 1997. Population structure and physiological changes within a hot spring microbial community following disturbance. Appl. Environ. Microbiol. 63:1367-1374.
19. Fisher, S. G., and L. S. Lerman. 1979. Length-independent separation of DNA restriction fragments in two dimensional gel electrophoresis. Cell 16: 191-200.
20. Gobler, C. J., D. A. Hutchins, N. S. Fisher, E. M. Cosper, and S. A. Sanudowilhelmy. 1997. Release and bioavailability of C, N, P, Se, and Fe following viral lysis of a marine chrysophyte. Limnol. Oceanogr. 42:1492-1504.
21. Gulati, R. D., A. L. Ooms-Wilms, O. F. R. Van Tongeren, G. Postema, and K. Siewertsen. 1992. The dynamics and role of limnetic zooplankton in Loosdrecht Lakes (The Netherlands). Hydrobiologia 233:69-86.
22. Hansen, M. C., T. Tolker-Nielsen, M. Givskov, and S. Molin. 1998. Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol. Ecol. 26:141-149.
23. Hennes, K. P., and M. Simon. 1995. Significance of bacteriophages for controlling bacterioplankton growth in a mesotrophic lake. Appl. Environ. Microbiol. 61:333-340.
24. Hennes, K. P., and C. A. Suttle. 1995. Direct counts of viruses in natural waters and laboratory cultures by epifluorescence microscopy. Limnol. Oceanogr. 40:1050-1055.
25. Hennes, K. P., C. A. Suttle, and A. M. Chan. 1995. Fluorescently labeled virus probes show that natural virus populations can control the structure of marine microbial communities. Appl. Environ. Microbiol. 61:3623-3627.
26. Jiang, C. L., and H. L. Xu. 1996. Diversity of aquatic actinomycetes in lakes of the middle plateau, Yunnan, China. Appl. Environ. Microbiol. 62:249-253.
27. Johnson, J. L. 1991. Isolation and purification of nucleic acids, p. 1-19. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd., West Sussex, England.
28. Johnston, D. W., and T. Cross. 1976. The occurrence and distribution of actinomycetes in lakes of the English Lake District. Freshwater Biol. 6:457-463.
29. Johnston, D. W., and T. Cross. 1976. Actinomycetes in lake muds: dormant spores or metabolically active mycelium. Freshwater Biol. 6:465-470.
30. Jürgens, K., and H. Güde. 1994. The potential importance of grazing-resistant bacteria in planktonic systems. Mar. Ecol. Prog. Ser. 112:169-188.
31. Kruskal, J. B., and M. Wish. 1978. Multidimensional scaling. Sage Publications. Beverly Hills, Calif.
32. Lessa, E. P. 1990. Multidimensional analysis of geographic genetic structure. Syst. Zool. 39:242-252.
33. Mathias, C. B., A. K. T. Kirschner, and B. Velimirov. 1995. Seasonal variations of virus abundance and viral control of the bacterial production in a backwater system of the Danube River. Appl. Environ. Microbiol. 61:3734-3740.
34. Middelboe, M., N. O. G. Jorgensen, and N. Kroer. 1996. Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton. Appl. Environ. Microbiol. 62:1991-1997.
35. Moed, J. R., and G. M. Hallegraeff. 1978. Some problems in the estimation of chlorophyll-a and phaeopigments from pre- and post-acidification spectrophotometric measurements. Int. Rev. Gesamten Hydrobiol. 63:787-800.
36. Muyzer, G., E. C. Dewaal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s rRNA. Appl. Environ. Microbiol. 59:695-700.
37. Nei, M., and W. H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-5273.
38. Nold, S. C., and G. Zwart. Patterns and governing forces in aquatic microbial communities. Aquat. Ecol. 32:17-35. (Review.)
39. Ogram, A. V., G. S. Sayler, and T. T. Barkay. 1988. The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods 7:57-66.
40. Porter, K. G., H. Paerl, R. Hodson, M. Pace, J. Priscu, B. Riemann, D. Scavia, and J. Stockner. 1988. Microbial interactions in lake food webs, p. 209-227. In S. R. Carpenter (ed.), Complex interactions in lake communities. Springer-Verlag, New York, N.Y.
41. Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
42. Proctor, L. M., and J. A. Fuhrman. 1990. Viral mortality of marine bacteria and cyanobacteria. Nature 343:60-62.
43. Reichenbach, H. 1992. The order Cytophagales, p. 3631-3675. In A. Balows, H. G. Truper, M. Dwokin, W. Harder, and K. M. Schleifer (ed.), The prokaryotes. Springer-Verlag, New York, N.Y.
44. Reisser, W. 1993. Viruses and virus-like particles of freshwater and marine eukaryotic algae - a review. Arch. Protistenkd. 143:257-265.
45. Reysenbach, A., L. J. Giver, G. S. Wickham, and N. R. Pace. 1992. Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ. Microbiol. 58:3417-3418.
46. Rijkeboer, M., F. de Bles, and H. J. Gons. 1990. Laboratory scale enclosure: concept, construction and operation. J. Plankton Res. 12:231-244.
47. Suttle, C. A. 1994. The significance of viruses to mortality in aquatic microbial communities. Microb. Ecol. 28:237-243.
48. Suttle, C. A., and A. M. Chan. 1994. Dynamics and distribution of cyanophages and their effects on marine Synechococcus spp. Appl. Environ. Microbiol. 60:3167-3174.
49. Suttle, C. A., A. M. Chan, and M. T. Cottrell. 1990. Infection of phytoplankton by viruses and reduction of primary productivity. Nature 347:467-470.
50. Teske, A., C. Wawer, G. Muyzer, and N. B. Ramsing. 1996. Distribution of sulfate-reducing bacteria in a stratified fjord (Manager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62:1405-1415.
51. Van Boekel, W. H. M., F. C. Hansen, R. Riegman, and R. P. M. Bak. Lysis-induced decline of a Phaeocystis spring bloom and coupling with the microbial foodweb. Mar. Ecol. Prog. Ser. 81:269-276.
52. Van Hannen, E. J., M. Veninga, J. Bloem, H. J. Gons, and H. J. Laanbroek. Genetic changes in the bacterial community structure associated with protistan grazers. Arch. Hydrobiol., in press.
53. Van Hannen, E. J., M. P. van Agterveld, H. J. Gons, and H. J. Laanbroek. 1998. Revealing genetic diversity of eukaryotic microorganisms in aquatic environments by denaturing gradient gel electrophoresis. J. Phycol. 34:206-213.
54. Weinbauer, M. G., and M. G. Hofle. 1998. Significance of viral lysis and flagellate grazing as factors controlling bacterioplankton production in a eutrophic lake. Appl. Environ. Microbiol. 64:431-438.
55. Yufera, M., and N. Navarro. 1995. Population growth dynamics of the rotifer Brachionus plicatilis cultured in non-limiting food conditions. Hydrobiologia 313:399-405.
56. Zwart, G., W. D. Hiorns, B. A. Methé, M. P. van Agterveld, R. Huismans, S.C. Nold, J. P. Zehr, and H. J. Laanbroek. 1999. Nearly identical 16SrRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst. Appl. Microbiol. 21:546-556.
57. Zwart, G., R. Huismans, M. P. van Agterveld, Y. Van de Peer, P. De Rijk, H. Eenhoorn, G. Muyzer, E. J. van Hannen, H. J. Gons, and H. J. Laanbroek. 1998. Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake. FEMS Microbiol. Ecol. 25:159-169.