-
1
-
-
0033757869
-
Structural genomics supplement issue
-
(ed)
-
Smith TL (ed) (2000) Structural Genomics Supplement Issue. Nat Struct Biol 7(11s) 927-994
-
(2000)
Nat Struct Biol
, vol.7
, Issue.11 S
, pp. 927-994
-
-
Smith, T.L.1
-
2
-
-
0345059376
-
Announcing the worldwide Protein Data Bank
-
DOI 10.1038/nsb1203-980
-
Berman HM, Henrick K, Nakamura H (2003) Announcing the worldwide Protein Data Bank. Nat Struct Biol 10(12):980 (Pubitemid 37500485)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.12
, pp. 980
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
-
3
-
-
0033954256
-
The protein data bank
-
Berman HM et al (2000) The protein data bank. Nucleic Acids Res 28:p235-p242
-
(2000)
Nucleic Acids Res
, vol.28
-
-
Berman, H.M.1
-
4
-
-
58149204068
-
The protein structure initiative struc-tural genomics knowledgebase
-
Berman HM et al (2009) The protein structure initiative struc-tural genomics knowledgebase. Nucleic Acids Res 37(Database issue):D365-D368
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Berman, H.M.1
-
6
-
-
80054849272
-
-
In: Bidgoli H (ed) G-O. Wiley, Hoboken, NJ
-
Reddy P (2004) In: Bidgoli H (ed) The internet encyclopedia, vol 2 G-O. Wiley, Hoboken, NJ, pp 298-310
-
(2004)
The Internet Encyclopedia
, vol.2
, pp. 298-310
-
-
Reddy, P.1
-
7
-
-
8844222708
-
TargetDB: A target registration database for structural genomics projects
-
DOI 10.1093/bioinformatics/bth300
-
Chen L et al (2004) TargetDB: a target registration database for structural genomics projects. Bioinformatics 20:2860-2862 (Pubitemid 39530181)
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2860-2862
-
-
Chen, L.1
Oughtred, R.2
Berman, H.M.3
Westbrook, J.4
-
8
-
-
33644873706
-
The RCSB PDB information portal for structural genomics
-
Kouranov A et al (2006) The RCSB PDB information portal for structural genomics. Nucleic Acids Res 34:D302-D305
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kouranov, A.1
-
9
-
-
60849113411
-
The protein model portal
-
Arnold K et al (2009) The protein model portal. J Struct Funct Genomics 10(1):1-8
-
(2009)
J Struct Funct Genomics
, vol.10
, Issue.1
, pp. 1-8
-
-
Arnold, K.1
-
10
-
-
80054854252
-
-
The Open Protein Structure Annotation Network Available from
-
The Open Protein Structure Annotation Network (2009). Available from: http://www.topsan.org/
-
(2009)
-
-
-
13
-
-
80054867517
-
-
Functional Analysis Server at the NYSGXRC Available from
-
Functional Analysis Server at the NYSGXRC (2009). Available from: http://www.nysgxrc.org/functional/
-
(2009)
-
-
-
14
-
-
13444251422
-
Ensembl 2005
-
DOI 10.1093/nar/gki138
-
Hubbard T et al (2005) Ensembl 2005. Nucleic Acids Res 33(Database issue):D447-D453 (Pubitemid 40207913)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Hubbard, T.1
Andrews, D.2
Caccamo, M.3
Cameron, G.4
Chen, Y.5
Clamp, M.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cunningham, F.10
Curwen, V.11
Cutts, T.12
Down, T.13
Durbin, R.14
Fernandez-Suarez, X.M.15
Gilbert, J.16
Hammond, M.17
Herrero, J.18
Hotz, H.19
Howe, K.20
Iyer, V.21
Jekosch, K.22
Kahari, A.23
Kasprzyk, A.24
Keefe, D.25
Keenan, S.26
Kokocinsci, F.27
London, D.28
Longden, I.29
McVicker, G.30
Melsopp, C.31
Meidl, P.32
Potter, S.33
Proctor, G.34
Rae, M.35
Rios, D.36
Schuster, M.37
Searle, S.38
Severin, J.39
Slater, G.40
Smedley, D.41
Smith, J.42
Spooner, W.43
Stabenau, A.44
Stalker, J.45
Storey, R.46
Trevanion, S.47
Ureta-Vidal, A.48
Vogel, J.49
White, S.50
Woodwark, C.51
Birney, E.52
more..
-
15
-
-
38549176691
-
Ensembl 2008
-
DOI 10.1093/nar/gkm988
-
Flicek P et al (2008) Ensembl 2008. Nucleic Acids Res 36(Database issue):D707-D714 (Pubitemid 351149811)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Flicek, P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.C.12
Eyre, T.13
Fitzgerald, S.14
Fernandez-Banet, J.15
Graf, S.16
Haider, S.17
Hammond, M.18
Holland, R.19
Howe, K.L.20
Howe, K.21
Johnson, N.22
Jenkinson, A.23
Kahari, A.24
Keefe, D.25
Kokocinski, F.26
Kulesha, E.27
Lawson, D.28
Longden, L.29
Megy, K.30
Meidl, P.31
Overduin, B.32
Parker, A.33
Pritchard, B.34
Prlic, A.35
Rice, S.36
Rios, D.37
Schuster, M.38
Sealy, I.39
Slater, G.40
Smedley, D.41
Spudich, G.42
Trevanion, S.43
Vilella, A.J.44
Vogel, J.45
White, S.46
Wood, M.47
Birney, E.48
Cox, T.49
Curwen, V.50
Durbin, R.51
Fernandez-Suarez, X.M.52
Herrero, J.53
Hubbard, T.J.P.54
Kasprzyk, A.55
Proctor, G.56
Smith, J.57
Ureta-Vidal, A.58
Searle, S.59
more..
-
18
-
-
0343618652
-
HOBACGEN: Database system for comparative genomics in bacteria
-
DOI 10.1101/gr.10.3.379
-
Perriere G, Duret L, Gouy M (2000) HOBACGEN: database system for comparative genomics in bacteria. Genome Res 10(3):379-385 (Pubitemid 30168670)
-
(2000)
Genome Research
, vol.10
, Issue.3
, pp. 379-385
-
-
Perriere, G.1
Duret, L.2
Gouy, M.3
-
19
-
-
0037249498
-
The Arabidopsis Information Resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
-
DOI 10.1093/nar/gkg076
-
Rhee SY et al (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31(1):224-228 (Pubitemid 36150370)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
Chen, G.4
Dixon, D.5
Doyle, A.6
Garcia-Hernandez, M.7
Huala, E.8
Lander, G.9
Montoya, M.10
Miller, N.11
Mueller, L.A.12
Mundodi, S.13
Reiser, L.14
Tacklind, J.15
Weems, D.C.16
Wu, Y.17
Xu, I.18
Yoo, D.19
Yoon, J.20
Zhang, P.21
more..
-
20
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
DOI 10.1093/nar/gki053
-
Guldener U et al (2005) CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Res 33(Database issue): D364-D368 (Pubitemid 40207896)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Guldener, U.1
Munsterkotter, M.2
Kastenmuller, G.3
Strack, N.4
Van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.J.8
Garcia-Martinez, J.9
Perez-Ortin, J.E.10
Michael, H.11
Kaps, A.12
Talla, E.13
Dujon, B.14
Andre, B.15
Souciet, J.L.16
De Montigny, J.17
Bon, E.18
Gaillardin, C.19
Mewes, H.W.20
more..
-
21
-
-
33644874168
-
DictyBase, the model organism database for Dictyostelium discoideum
-
Chisholm RL et al (2006) dictyBase, the model organism database for Dictyostelium discoideum. Nucleic Acids Res 34(Database issue):D423-D427
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Chisholm, R.L.1
-
22
-
-
0033971754
-
EcoGene: A genome sequence database for Escherichia coli K-12
-
Rudd KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28(1):60-64 (Pubitemid 30047714)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 60-64
-
-
Rudd, K.E.1
-
26
-
-
33846049901
-
WormBase: New content and better access
-
DOI 10.1093/nar/gkl818
-
Bieri T et al (2007) WormBase: new content and better access. Nucleic Acids Res 35(Database issue):D506-D510 (Pubitemid 46056260)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Bieri, T.1
Blasiar, D.2
Ozersky, P.3
Antoshechkin, I.4
Bastiani, C.5
Canaran, P.6
Chan, J.7
Chen, N.8
Chen, W.J.9
Davis, P.10
Fiedler, T.J.11
Girard, L.12
Han, M.13
Harris, T.W.14
Kishore, R.15
Lee, R.16
McKay, S.17
Muller, H.-M.18
Nakamura, C.19
Petcherski, A.20
Rangarajan, A.21
Rogers, A.22
Schindelman, G.23
Schwarz, E.M.24
Spooner, W.25
Tuli, M.A.26
Van Auken, K.27
Wang, D.28
Wang, X.29
Williams, G.30
Durbin, R.31
Stein, L.D.32
Sternberg, P.W.33
Spieth, J.34
more..
-
27
-
-
33644876661
-
The Zebrafish Information Network: The zebrafish model organism database
-
Sprague J et al (2006) The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Res 34(Database issue):D581-D585
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Sprague, J.1
-
28
-
-
75549090603
-
The Pfam protein families database
-
Finn RD et al (2010) The Pfam protein families database. Nucleic Acids Res 38(Database issue):D211-D222
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
-
-
Finn, R.D.1
-
29
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler R et al (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29(1):37-40 (Pubitemid 32054401)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.R.10
Durbin, R.11
Falquet, L.12
Fleischmann, W.13
Gouzy, J.14
Hermjakob, H.15
Hulo, N.16
Jonassen, I.17
Kahn, D.18
Kanapin, A.19
Karavidopoulou, Y.20
Lopez, R.21
Marx, B.22
Mulder, N.J.23
Oinn, T.M.24
Pagni, M.25
Servant, F.26
Sigrist, C.J.A.27
Zdobnov, E.M.28
more..
-
30
-
-
33846041078
-
The Universal Protein Resource (UniProt
-
The UniProt Consortium (2007) The Universal Protein Resource (UniProt). Nucleic Acids Res 35(Database issue):D193-D197
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.DATABASE ISSUE
-
-
-
31
-
-
38549146894
-
The Pfam protein families database
-
DOI 10.1093/nar/gkm960
-
Finn RD et al (2008) The Pfam protein families database. Nucleic Acids Res 36(Database issue):D281-D288 (Pubitemid 351149737)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.-R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
32
-
-
0035167151
-
IProClass: An integrated, comprehensive and annotated protein classification database
-
Wu CH et al (2001) iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Res 29(1):52-54 (Pubitemid 32054405)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 52-54
-
-
Wu, C.H.1
Xiao, C.2
Hou, Z.3
Huang, H.4
Barker, W.C.5
-
33
-
-
0037248869
-
PRINTS and its automatic supplement, prePRINTS
-
DOI 10.1093/nar/gkg030
-
Attwood TK et al (2003) PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res 31(1):400-402 (Pubitemid 36150412)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 400-402
-
-
Attwood, T.K.1
Bradley, P.2
Flower, D.R.3
Gaulton, A.4
Maudling, N.5
Mitchell, A.L.6
Moulton, G.7
Nordle, A.8
Paine, K.9
Taylor, P.10
Uddin, A.11
Zygouri, C.12
-
34
-
-
0042423439
-
Automated annotation of microbial proteomes in SWISS-PROT
-
Gattiker A et al (2003) Automated annotation of microbial proteomes in SWISS-PROT. Comput Biol Chem 27(1):49-58
-
(2003)
Comput Biol Chem
, vol.27
, Issue.1
, pp. 49-58
-
-
Gattiker, A.1
-
35
-
-
0035175673
-
TIGRFAMs: A protein family resource for the functional identification of proteins
-
Haft DH et al (2001) TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res 29(1):41-43 (Pubitemid 32054402)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 41-43
-
-
Haft, D.H.1
Loftus, B.J.2
Richardson, D.L.3
Yang, F.4
Eisen, J.A.5
Paulsen, I.T.6
White, O.7
-
38
-
-
33644876022
-
The PROSITE database
-
Hulo N et al (2006) The PROSITE database. Nucleic Acids Res 34(Database issue):D227-D230
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Hulo, N.1
-
39
-
-
33745595070
-
Evolutionary trace report-maker: A new type of service for comparative analysis of proteins
-
Mihalek I, Res I, Lichtarge O (2006) Evolutionary trace report-maker: a new type of service for comparative analysis of proteins. Bioinformatics 22(13):1656-1657
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1656-1657
-
-
Mihalek, I.1
Res, I.2
Lichtarge, O.3
-
40
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
DOI 10.1093/nar/gkl842
-
Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35(Database issue):D61-D65 (Pubitemid 46056171)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
43
-
-
0032926060
-
The CATH database provides insights into protein structure/function relationships
-
DOI 10.1093/nar/27.1.275
-
Orengo CA et al (1999) The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res 27(1):275-279 (Pubitemid 29211857)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 275-279
-
-
Orengo, C.A.1
Pearl, F.M.G.2
Bray, J.E.3
Todd, A.E.4
Martin, A.C.5
Lo Conte, L.6
Thornton, J.M.7
-
44
-
-
58149187899
-
The CATH classification revisited-archi-tectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff AL et al (2009) The CATH classification revisited-archi-tectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res 37(Database issue):D310-D314
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Cuff, A.L.1
-
46
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and struc-tures
-
Murzin AG et al (1995) SCOP: a structural classification of proteins database for the investigation of sequences and struc-tures. J Mol Biol 247:536-540
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
-
47
-
-
41149108458
-
A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules
-
DOI 10.1093/bfgp/elm020, Special Issue: Resources for Functional Genomics and Proteomics
-
Huhne R, Koch FT, Suhnel J (2007) A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules. Brief Funct Genomic Proteomic 6(3):220-239 (Pubitemid 351863878)
-
(2007)
Briefings in Functional Genomics and Proteomics
, vol.6
, Issue.3
, pp. 220-239
-
-
Hu1
hne, R.2
Koch, F.-T.3
Suhnel, J.4
-
49
-
-
58149194624
-
SMART 6: Recent updates and new developments
-
Letunic I, Doerks T, Bork P (2009) SMART 6: recent updates and new developments. Nucleic Acids Res 37(Database issue): D229-D232
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
50
-
-
38549138986
-
BioMagResBank
-
DOI 10.1093/nar/gkm957
-
Ulrich EL et al (2008) BioMagResBank. Nucleic Acids Res 36(Database issue):D402-D408 (Pubitemid 351149757)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Ulrich, E.L.1
Akutsu, H.2
Doreleijers, J.F.3
Harano, Y.4
Ioannidis, Y.E.5
Lin, J.6
Livny, M.7
Mading, S.8
Maziuk, D.9
Miller, Z.10
Nakatani, E.11
Schulte, C.F.12
Tolmie, D.E.13
Kent Wenger, R.14
Yao, H.15
Markley, J.L.16
-
51
-
-
58149187896
-
MODBASE, a database of annotated comparative protein structure models and associated resources
-
Pieper U et al (2009) MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res 37(Database issue):D347-D354
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Pieper, U.1
-
52
-
-
58149193233
-
The SWISS-MODEL Repository and associ-ated resources
-
Kiefer F et al (2009) The SWISS-MODEL Repository and associ-ated resources. Nucleic Acids Res 37(Database issue):D387-D392
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Kiefer, F.1
-
53
-
-
3042581007
-
Flexible structure alignment by chaining aligned fragment pairs allowing twists
-
DOI 10.1093/bioinformatics/btg1086
-
Ye Y, Godzik A (2003) Flexible structure alignment by chaining alignedfragmentpairsallowingtwists. Bioinformatics 19(Suppl2): ii246-ii255 (Pubitemid 41296662)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 2
-
-
Ye, Y.1
Godzik, A.2
-
54
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar RC (2004) MUSCLE: multiple sequence alignment withhigh accuracyandhighthroughput. Nucleic Acids Res 32(5):1792-1797 (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
55
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673-4680 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
56
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM et al (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinfor-matics 25(9):1189-1191
-
(2009)
Bioinfor-matics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
-
57
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch A (2000) The ENZYME database in 2000. Nucleic Acids Res 28(1):304-305 (Pubitemid 30047788)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 304-305
-
-
Bairoch, A.1
-
58
-
-
50249097395
-
Proteopedia\-a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
-
Hodis E et al (2008) Proteopedia\-a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome Biol 9(8):R121
-
(2008)
Genome Biol
, vol.9
, Issue.8
-
-
Hodis, E.1
-
59
-
-
11844292002
-
Inference of protein function from protein structure
-
DOI 10.1016/j.str.2004.10.015, PII S0969212604003892
-
Pal D, Eisenberg D (2005) Inference of protein function from protein structure. Structure 13(1):121-130 (Pubitemid 40092480)
-
(2005)
Structure
, vol.13
, Issue.1
, pp. 121-130
-
-
Pal, D.1
Eisenberg, D.2
-
60
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nat Genet 25:25-29
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
-
61
-
-
22544441094
-
ProFunc: A server for predicting protein function from 3D structure
-
DOI 10.1093/nar/gki414
-
Laskowski RA, Watson JD, Thornton JM (2005) ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res 33(Web Server issue):W89-W93 (Pubitemid 44529886)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Laskowski, R.A.1
Watson, J.D.2
Thornton, J.M.3
-
64
-
-
33846108633
-
BindingDB: A web-accessible database of experimentally determined protein-ligand binding affinities
-
DOI 10.1093/nar/gkl999
-
Liu T et al (2007) BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res 35(Database issue):D198-D201 (Pubitemid 46056198)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Liu, T.1
Lin, Y.2
Wen, X.3
Jorissen, R.N.4
Gilson, M.K.5
-
65
-
-
58149186477
-
PID: The Pathway Interaction Database
-
Schaefer CF et al (2009) PID: the Pathway Interaction Database. Nucleic Acids Res 37(Database issue):D674-D679
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Schaefer, C.F.1
-
66
-
-
58149187491
-
PIRSF family classification system for protein functional and evolutionary analysis
-
Nikolskaya AN et al (2006) PIRSF family classification system for protein functional and evolutionary analysis. Evol Bioinform Online 2:197-209
-
(2006)
Evol Bioinform Online
, vol.2
, pp. 197-209
-
-
Nikolskaya, A.N.1
-
68
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon P et al (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Gen-omeRes 13(11):2498-2504 (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
69
-
-
33846073818
-
MINT: The Molecular INTer-action database
-
Chatr-aryamontri A et al (2007) MINT: the Molecular INTer-action database. Nucleic Acids Res 35(Database issue):D572-D574
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.DATABASE ISSUE
-
-
Chatr-Aryamontri, A.1
-
70
-
-
61449243886
-
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interac-tions
-
Chautard E et al (2009) MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interac-tions. Bioinformatics 25(5):690-691
-
(2009)
Bioinformatics
, vol.25
, Issue.5
, pp. 690-691
-
-
Chautard, E.1
-
71
-
-
48249112175
-
MPIDB: The microbial protein interaction database
-
Goll J et al (2008) MPIDB: the microbial protein interaction database. Bioinformatics 24(15):1743-1744
-
(2008)
Bioinformatics
, vol.24
, Issue.15
, pp. 1743-1744
-
-
Goll, J.1
-
72
-
-
33644875537
-
MIPS: Analysis and annotation of proteins from whole genomes in 2005
-
Mewes HW et al (2006) MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res 34(Database issue):D169-D172
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Mewes, H.W.1
-
73
-
-
33644873184
-
BioGRID: A general repository for inter-action datasets
-
Stark C et al (2006) BioGRID: a general repository for inter-action datasets. Nucleic Acids Res 34(Database issue):D535-D539
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Stark, C.1
-
75
-
-
34548855730
-
Unequal evolutionary conservation of human protein interactions in interologous networks
-
Brown KR, Jurisica I (2007) Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol 8(5):R95
-
(2007)
Genome Biol
, vol.8
, Issue.5
-
-
Brown, K.R.1
Jurisica, I.2
-
76
-
-
13444259844
-
Reactome: A knowledgebase of bio-logical pathways
-
Joshi-Tope G et al (2005) Reactome: a knowledgebase of bio-logical pathways. Nucleic Acids Res 33(Database issue):D428-D432
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.DATABASE ISSUE
-
-
Joshi-Tope, G.1
-
77
-
-
27244436714
-
Expansion of the Biocyc collection of pathway/genome databases to 160 genomes
-
DOI 10.1093/nar/gki892
-
Karp PD et al (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 33(19):6083-6089 (Pubitemid 41742547)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahren, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
Lopez-Bigas, N.10
-
78
-
-
33846047770
-
IntAct - Open source resource for molecular interaction data
-
DOI 10.1093/nar/gkl958
-
Kerrien S et al (2007) IntAct-open source resource for molec-ular interaction data. Nucleic Acids Res 35(Database issue): D561-D565 (Pubitemid 46056270)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
Kohler, C.11
Khadake, J.12
Leroy, C.13
Liban, A.14
Lieftink, C.15
Montecchi-Palazzi, L.16
Orchard, S.17
Risse, J.18
Robbe, K.19
Roechert, B.20
Thorneycroft, D.21
Zhang, Y.22
Apweiler, R.23
Hermjakob, H.24
more..
-
79
-
-
80054857595
-
-
Available from
-
NextBio (2009). Available from: http://www.nextbio.com/
-
(2009)
-
-
-
81
-
-
80054848490
-
-
Available from
-
Human Cornea 2-DE database (2009). Available from: http:// www.cornea-proteomics.com/
-
(2009)
Human Cornea 2-DE Database
-
-
-
82
-
-
80054864558
-
-
Available from
-
DOSAC-COBS 2D-PAGE database (2009). Available from: http://www.dosac. unipa.it/2d/
-
(2009)
-
-
-
85
-
-
80054863268
-
-
Available from
-
Reproduction 2D-PAGE (2009). Available from: http://reprod. njmu.edu.cn/cgi-bin/2d/2d.cgi
-
(2009)
Reproduction 2D-PAGE
-
-
-
87
-
-
0032560492
-
Human and mouse proteomic databases: Novel resources in the protein universe
-
DOI 10.1016/S0014-5793(98)00527-4, PII S0014579398005274
-
Celis JE et al (1998) Human and mouse proteomic databases: novel resources in the protein universe. FEBS Lett 430(1-2): 64-72 (Pubitemid 28307033)
-
(1998)
FEBS Letters
, vol.430
, Issue.1-2
, pp. 64-72
-
-
Celis, J.E.1
Ostergaard, M.2
Jensen, N.A.3
Gromova, I.4
Rasmussen, H.H.5
Gromov, P.6
-
88
-
-
0030905110
-
Construction of HSC-2DPAGE: A two-dimensional gel electrophoresis database of heart proteins
-
DOI 10.1002/elps.1150180322
-
Evans G et al (1997) Construction of HSC-2DPAGE: a two-dimensional gel electrophoresis database of heart proteins. Electrophoresis 18(3-4):471-479 (Pubitemid 27174432)
-
(1997)
Electrophoresis
, vol.18
, Issue.3-4
, pp. 471-479
-
-
Evans, G.1
Wheeler, C.H.2
Corbett, J.M.3
Dunn, M.J.4
-
89
-
-
46249112468
-
The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
-
DOI 10.1016/j.jprot.2008.02.005, PII S1874391908000092
-
Hoogland C et al (2008) The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server. J Proteomics 71(2):245-248 (Pubitemid 351915856)
-
(2008)
Journal of Proteomics
, vol.71
, Issue.2
, pp. 245-248
-
-
Hoogland, C.1
Mostaguir, K.2
Appel, R.D.3
Lisacek, F.4
-
90
-
-
3543111513
-
SWISS-2DPAGE, ten years later
-
DOI 10.1002/pmic.200300830
-
Hoogland C et al (2004) SWISS-2DPAGE, ten years later. Proteomics 4(8):2352-2356 (Pubitemid 39025334)
-
(2004)
Proteomics
, vol.4
, Issue.8
, pp. 2352-2356
-
-
Hoogland, C.1
Mostaguir, K.2
Sanchez, J.-C.3
Hochstrasser, D.F.4
Appel, R.D.5
-
91
-
-
16344375379
-
Characterisation of rice anther proteins expressed at the young microspore stage
-
DOI 10.1002/1615-9861(200109)1:9<1149::AID-PROT1149>3.0.CO;2-R
-
Imin N et al (2001) Characterisation of rice anther proteins expressed at the young microspore stage. Proteomics 1(9):1149-1161 (Pubitemid 33696480)
-
(2001)
Proteomics
, vol.1
, Issue.9
, pp. 1149-1161
-
-
Imin, N.1
Kerim, T.2
Weinman, J.J.3
Rolfe, B.G.4
-
93
-
-
33846039701
-
ArrayExpress - A public database of microarray experiments and gene expression profiles
-
DOI 10.1093/nar/gkl995
-
Parkinson H et al (2007) ArrayExpress-a public database of microarray experiments and gene expression profiles. Nucleic Acids Res 35(Database issue):D747-D750 (Pubitemid 46056303)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeygunawardena, N.4
Coulson, R.5
Farne, A.6
Holloway, E.7
Kolesnykov, N.8
Lilja, P.9
Lukk, M.10
Mani, R.11
Rayner, T.12
Sharma, A.13
William, E.14
Sarkans, U.15
Brazma, A.16
-
95
-
-
0348129524
-
CleanEx: A database of heterogeneous gene expression data based on a consistent gene nomenclature
-
Praz V, Jagannathan V, Bucher P (2004) CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature. Nucleic Acids Res 32(Database issue):D542-D547 (Pubitemid 38081717)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Praz, V.1
Jagannathan, V.2
Bucher, P.3
-
96
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
DOI 10.1074/mcp.M500279-MCP200
-
Uhlen M et al (2005) A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics 4(12):1920-1932 (Pubitemid 41830186)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.12
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
Szigyarto, C.A.-K.4
Amini, B.5
Andersen, E.6
Andersson, A.-C.7
Angelidou, P.8
Asplund, A.9
Asplund, C.10
Berglund, L.11
Bergstrom, K.12
Brumer, H.13
Cerjan, D.14
Ekstrom, M.15
Elobeid, A.16
Eriksson, C.17
Fagerberg, L.18
Falk, R.19
Fall, J.20
Forsberg, M.21
Bjorklund, M.G.22
Gumbel, K.23
Halimi, A.24
Hallin, I.25
Hamsten, C.26
Hansson, M.27
Hedhammar, M.28
Hercules, G.29
Kampf, C.30
Larsson, K.31
Lindskog, M.32
Lodewyckx, W.33
Lund, J.34
Lundeberg, J.35
Magnusson, K.36
Malm, E.37
Nilsson, P.38
Odling, J.39
Oksvold, P.40
Olsson, I.41
Oster, E.42
Ottosson, J.43
Paavilainen, L.44
Persson, A.45
Rimini, R.46
Rockberg, J.47
Runeson, M.48
Sivertsson, A.49
Skollermo, A.50
Steen, J.51
Stenvall, M.52
Sterky, F.53
Stromberg, S.54
Sundberg, M.55
Tegel, H.56
Tourle, S.57
Wahlund, E.58
Walden, A.59
Wan, J.60
Wernerus, H.61
Westberg, J.62
Wester, K.63
Wrethagen, U.64
Xu, L.L.65
Hober, S.66
Ponten, F.67
more..
-
97
-
-
0030751011
-
Escherichia coli proteome analysis using the gene-protein database
-
VanBogelen RA et al (1997) Escherichia coli proteome analysis using the gene-protein database. Electrophoresis 18(8): 1243-1251
-
(1997)
Electrophoresis
, vol.18
, Issue.8
, pp. 1243-1251
-
-
Vanbogelen, R.A.1
-
100
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry ST et al (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29(1):308-311 (Pubitemid 32054478)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.-H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
101
-
-
9144266311
-
SNP500Cancer: A public resource for sequence validation and assay development for genetic variation in candidate genes
-
Packer BR et al (2004) SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes. Nucleic Acids Res 32(Database issue): D528-D532
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE ISSUE
-
-
Packer, B.R.1
-
102
-
-
20844461337
-
LS-SNP: Large-scale annotation of coding non-synonymous SNPs based on multiple information sources
-
DOI 10.1093/bioinformatics/bti442
-
Karchin R et al (2005) LS-SNP: large-scale annotation ofcoding non-synonymous SNPs based on multiple information sources. Bioinformatics 21(12):2814-2820 (Pubitemid 40862277)
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2814-2820
-
-
Karchin, R.1
Diekhans, M.2
Kelly, L.3
Thomas, D.J.4
Pieper, U.5
Eswar, N.6
Haussler, D.7
Sali, A.8
-
103
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
DOI 10.1093/nar/gki033
-
Hamosh A et al (2005) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disor-ders. Nucleic Acids Res 33(Database issue):D514-D517 (Pubitemid 40207927)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
104
-
-
27744460659
-
PharmGKB: The pharmacogenetics and pharmacogenomics knowledge base
-
Thorn CF, Klein TE, Altman RB (2005) PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base. Methods Mol Biol 311:179-191
-
(2005)
Methods Mol Biol
, vol.311
, pp. 179-191
-
-
Thorn, C.F.1
Klein, T.E.2
Altman, R.B.3
-
105
-
-
33644876210
-
DrugBank: A comprehensive resource for in silico drug discovery and exploration
-
Wishart DS et al (2006) DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res 34(Database issue):D668-D672
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Wishart, D.S.1
-
106
-
-
58149395901
-
Orphanet and the Dutch Steering Committee Orphan Drugs. A European and Dutch databank of information on rare diseases
-
Liem SL (2008) Orphanet and the Dutch Steering Committee Orphan Drugs. A European and Dutch databank of information on rare diseases. Ned Tijdschr Tandheelkd 115(11):621-623
-
(2008)
Ned Tijdschr Tandheelkd
, vol.115
, Issue.11
, pp. 621-623
-
-
Liem, S.L.1
-
107
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
DOI 10.1093/nar/gkm1000
-
Wheeler DL et al (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 36(Database issue):D13-D21 (Pubitemid 351149689)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
Dicuccio, M.8
Edgar, R.9
Federhen, S.10
Feolo, M.11
Geer, L.Y.12
Helmberg, W.13
Kapustin, Y.14
Khovayko, O.15
Landsman, D.16
Lipman, D.J.17
Madden, T.L.18
Maglott, D.R.19
Miller, V.20
Ostell, J.21
Pruitt, K.D.22
Schuler, G.D.23
Shumway, M.24
Sequeira, E.25
Sherry, S.T.26
Sirotkin, K.27
Souvorov, A.28
Starchenko, G.29
Tatusov, R.L.30
Tatusova, T.A.31
Wagner, L.32
Yaschenko, E.33
more..
-
108
-
-
80051584883
-
-
Available from
-
Martz E (2009) FirstGlance in Jmol. Available from: http:// firstglance.jmol.org
-
(2009)
FirstGlance in Jmol
-
-
Martz, E.1
-
109
-
-
59349103076
-
Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data
-
Price WN 2nd et al (2009) Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. Nat Biotechnol 27(1):51-57
-
(2009)
Nat Biotechnol
, vol.27
, Issue.1
, pp. 51-57
-
-
Price, I.I.W.N.1
-
110
-
-
3242885293
-
The PredictProtein server
-
DOI 10.1093/nar/gkh377
-
Rost B, Yachdav G, Liu J (2004) The PredictProtein server. Nucleic Acids Res 32(Web Server issue):W321-W326 (Pubitemid 39004075)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Rost, B.1
Yachdav, G.2
Liu, J.3
-
111
-
-
1542358787
-
Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life
-
DOI 10.1016/j.jmb.2004.02.002, PII S0022283604001482
-
Ward JJ et al (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 337(3):635-645 (Pubitemid 38326883)
-
(2004)
Journal of Molecular Biology
, vol.337
, Issue.3
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
|