The protein structure initiative structural genomics knowledgebase

Nucleic Acids Research

Volumn 37, Issue SUPPL. 1, 2009, Pages

  Berman, Helen M ^a   Westbrook, John D ^a   Gabanyi, Margaret J ^a   Tao, Wendy ^a   Shah, Raship ^a   Kouranov, Andrei ^a   Schwede, Torsten ^b   Arnold, Konstantin ^b   Kiefer, Florian ^b   Bordoli, Lorenza ^b   Kopp, Jürgen ^b,c   Podvinec, Michael ^b   Adams, Paul D ^d   Carter, Lester G ^d   Minor, Wladek ^e   Nair, Rajesh ^f   Baer, Joshua La ^g  

^a RUTGERS UNIVERSITY   (United States)

^b UNIVERSITY OF BASEL   (Switzerland)

^c UNIVERSITY OF HEIDELBERG   (Germany)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^e UNIVERSITY OF VIRGINIA   (United States)

^f Och Spine at New York Presbyterian Hospitals   (United States)

^g HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; COMPUTER PREDICTION; HIGH THROUGHPUT SCREENING; INFORMATION PROCESSING; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN STRUCTURE; REFERENCE DATABASE; STRUCTURAL GENOMICS; SYSTEMS BIOLOGY;

DATABASES, PROTEIN; GENOMICS; PROTEIN CONFORMATION; PROTEINS; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 58149204068     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn790     Document Type: Article

References (22)

1. Berman,H.M., Henrick,K. and Nakamura,H. (2003) Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10, 980.
2. Berman,H. (2008) Harnessing knowledge from structural genomics. Structure, 16, 16-18.
3. Chen,L., Oughtred,R., Berman,H.M. and Westbrook,J. (2004) TargetDB: A target registration database for structural genomics projects. Bioinformatics, 20, 2860-2862.
4. Kouranov,A., Xie,L., de la Cruz,J., Chen,L., Westbrook,J., Bourne,P.E. and Berman,H.M. (2006) The RCSB PDB information portal for structural genomics. Nucleic Acids Res., 34, D302-D305.
5. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
6. Sonnhammer,E.L., Eddy,S.R., Birney,E., Bateman,A. and Durbin,R. (1998) Pfam: Multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res., 26, 320-322.
7. Wilson,D., Madera,M., Vogel,C., Chothia,C. and Gough,J. (2007) The SUPERFAMILY database in 2007: Families and functions. Nucleic Acids Res., 35, D308-D313.
8. Haft,D.H., Selengut,J.D. and White,O. (2003) The TIGRFAMs database of protein families. Nucleic Acids Res., 31, 371-373.
9. Corpet,F., Gouzy,J. and Kahn,D. (1998) The ProDom database of protein domain families. Nucleic Acids Res., 26, 323-326.
10. Wu,C.H., Xiao,C., Hou,Z., Huang,H. and Barker,W.C. (2001) iProClass: An integrated, comprehensive and annotated protein classification database. Nucleic Acids Res., 29, 52-54.
11. Hulo,N., Bairoch,A., Bulliard,V., Cerutti,L., Cuche,B.A., de Castro,E., Lachaize,C., Langendijk-Genevaux,P.S. and Sigrist,C.J. (2008) The 20 years of PROSITE. Nucleic Acids Res., 36, D245-D249.
12. Berman,H.M., Burley,S.K., Chiu,W., Sali,A., Adzhubei,A., Bourne,P.E., Bryant,S.H., Dunbrack,R.L. Jr., Fidelis,K., Frank,J. et al. (2006) Outcome of a workshop on archiving structural models of biological macromolecules. Structure, 14, 1211-1217.
13. Arnold,K., Kiefer,F., Kopp,J., Battey,J.N., Podvinec,M., Westbrook,J., Berman,H., Bordoli,L. and Schwede,T. (2008) The protein model portal. J. Struct. Funct. Genomics (in press).
14. Pieper,U., Eswar,N., Davis,F.P., Braberg,H., Madhusudhan,M.S., Rossi,A., Marti-Renom,M., Karchin,R., Webb,B.M., Eramian,D. et al. (2006) MODBASE: A database of annotated comparative protein structure models and associated resources.
15. Kopp,J. and Schwede,T. (2006) The SWISS-MODEL repository: New features and functionalities. Nucleic Acids Res., 34, D315-D318.
16. The UniProt Consortium. (2007) The Universal Protein Resource (UniProt). Nucleic Acids Res., 35, D193-D197.
17. Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J., Rapp,B.A. and Wheeler,D.L. (2000) GenBank. Nucleic Acids Res., 28, 15-18.
18. Wheeler,D.L., Barrett,T., Benson,D.A., Bryant,S.H., Canese,K., Chetvernin,V., Church,D.M., Dicuccio,M., Edgar,R., Federhen,S. et al. (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res, 36, D13-21.
19. Orengo,C.A., Michie,A.D., Jones,S., Jones,D.T., Swindells,M.B. and Thornton,J.M. (1997) CATH-a hierarchic classification of protein domain structures. Structure, 5, 1093-1108.
20. Conte,L., Bart,A., Hubbard,T., Brenner,S., Murzin,A. and Chothia,C. (2000) SCOP: A structural classification of proteins database. Nucleic Acids Res., 28, 257-259.
21. The UniProt Consortium. (2000) Gene ontology: Tool for the unification of biology. Nat. Genet., 25, 25-29.
22. Perkel,J. (2008) Structural∥oteomics: The relentless pursuit of protein shape. Science, 321, 707-710.