-
3
-
-
0033578363
-
The 3D NOESY-[H-1,N-15,H-1]-ZQ-TROSY NMR experiment with diagonal peak suppression
-
Pervushin, K.V., Wider, G., Riek, R. and Wüthrich, K. (1999) The 3D NOESY-[H-1,N-15,H-1]-ZQ-TROSY NMR experiment with diagonal peak suppression. Proc. Natl Acad. Sci. USA, 96, 9607-9612:
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 9607-9612
-
-
Pervushin, K.V.1
Wider, G.2
Riek, R.3
Wüthrich, K.4
-
4
-
-
0024572653
-
Creation of a nuclear magnetic resonance data repository and literature database
-
Ulrich, E.L., Markley, J.L. and Kyogoku, Y. (1989) Creation of a nuclear magnetic resonance data repository and literature database. Prot. Seq. Data Anal., 2, 23-37.
-
(1989)
Prot. Seq. Data Anal
, vol.2
, pp. 23-37
-
-
Ulrich, E.L.1
Markley, J.L.2
Kyogoku, Y.3
-
5
-
-
0026223896
-
A relational database for sequence-specific protein NMR data
-
Seavey, B.R., Farr, E.A., Westler, W.M. and Markley, J.L. (1991) A relational database for sequence-specific protein NMR data. J. Biomol. NMR, 1, 217-236.
-
(1991)
J. Biomol. NMR
, vol.1
, pp. 217-236
-
-
Seavey, B.R.1
Farr, E.A.2
Westler, W.M.3
Markley, J.L.4
-
6
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
7
-
-
0345059376
-
Announcing the worldwide Protein Data Bank
-
Berman, H.M., Henrick, K. and Nakamura, H. (2003) Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10, 980.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 980
-
-
Berman, H.M.1
Henrick, K.2
Nakamura, H.3
-
8
-
-
24344440618
-
Probabilistic identification of spin systems and their assignments including coil-helix inference as output (PISTACHIO)
-
Eghbalnia, H.R., Bahrami, A., Wang, L., Assadi, A. and Markley, J.L. (2005) Probabilistic identification of spin systems and their assignments including coil-helix inference as output (PISTACHIO). J. Biomol. NMR, 32, 219-233.
-
(2005)
J. Biomol. NMR
, vol.32
, pp. 219-233
-
-
Eghbalnia, H.R.1
Bahrami, A.2
Wang, L.3
Assadi, A.4
Markley, J.L.5
-
9
-
-
0034923123
-
Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data
-
Moseley, H.N., Monleon, D. and Montelione, G.T. (2001) Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data. Meth. Enzymol., 339 91-108.
-
(2001)
Meth. Enzymol
, vol.339
, pp. 91-108
-
-
Moseley, H.N.1
Monleon, D.2
Montelione, G.T.3
-
10
-
-
0000714031
-
Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
-
Bartels, C., Billeter, M., Güntert, P. and Wüthrich, K. (1996) Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR, 7, 207-213.
-
(1996)
J. Biomol. NMR
, vol.7
, pp. 207-213
-
-
Bartels, C.1
Billeter, M.2
Güntert, P.3
Wüthrich, K.4
-
11
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann, T., Güntert, P. and Wüthrich, K. (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol., 319, 209-227.
-
(2002)
J. Mol. Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
12
-
-
33749524593
-
Automated protein structure determination from NMR spectra
-
Lopez-Mendez, B. and Güntert, P. (2006) Automated protein structure determination from NMR spectra. J. Am. Chem. Soc., 128, 13112-13122.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 13112-13122
-
-
Lopez-Mendez, B.1
Güntert, P.2
-
13
-
-
33847283016
-
ARIA2: Automated NOE assignment and data integration in NMR structure calculation
-
Rieping, W., Habeck, M., Bardiaux, B., Bernard, A., Malliavin, T.E. and Nilges, M. (2007) ARIA2: Automated NOE assignment and data integration in NMR structure calculation. Bioinformatics, 23, 381-382.
-
(2007)
Bioinformatics
, vol.23
, pp. 381-382
-
-
Rieping, W.1
Habeck, M.2
Bardiaux, B.3
Bernard, A.4
Malliavin, T.E.5
Nilges, M.6
-
14
-
-
0031851289
-
New technique in structural NMR - anisotropic interactions
-
Prestegard, J.H. (1998) New technique in structural NMR - anisotropic interactions. Nat. Struct. Biol., 5, 517-522.
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 517-522
-
-
Prestegard, J.H.1
-
15
-
-
0030940339
-
NMR evidence for slow collective motions in cyanomet-myoglobin
-
Tolman, J.R., Flanagan, J.M., Kennedy, M.A. and Prestegard, J.H. (1997) NMR evidence for slow collective motions in cyanomet-myoglobin. Nat. Struct. Biol., 4, 292-297.
-
(1997)
Nat. Struct. Biol
, vol.4
, pp. 292-297
-
-
Tolman, J.R.1
Flanagan, J.M.2
Kennedy, M.A.3
Prestegard, J.H.4
-
16
-
-
0030722243
-
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium
-
Tjandra, N. and Bax, A. (1997). Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. Science, 278, 1111-1114.
-
(1997)
Science
, vol.278
, pp. 1111-1114
-
-
Tjandra, N.1
Bax, A.2
-
17
-
-
0000286998
-
Recommendations for the presentation of NMR structures of proteins and nucleic acids
-
Markley, J.L., Bax, A., Arata, Y., Hilbers, C.W., Kaptein, R., Sykes, B.D., Wright, P.E. and Wüthrich, K. (1998) Recommendations for the presentation of NMR structures of proteins and nucleic acids. Pure Appl. Chem., 70, 117-142.
-
(1998)
Pure Appl. Chem
, vol.70
, pp. 117-142
-
-
Markley, J.L.1
Bax, A.2
Arata, Y.3
Hilbers, C.W.4
Kaptein, R.5
Sykes, B.D.6
Wright, P.E.7
Wüthrich, K.8
-
18
-
-
1442306656
-
Assignment validation, software suite for the evaluation and presentation of protein resonance assignment data
-
Moseley, H.N., Sahota, G. and Montelione, G.T. (2004) Assignment validation, software suite for the evaluation and presentation of protein resonance assignment data. J. Biomol. NMR, 28, 341-355.
-
(2004)
J. Biomol. NMR
, vol.28
, pp. 341-355
-
-
Moseley, H.N.1
Sahota, G.2
Montelione, G.T.3
-
19
-
-
23144462958
-
Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications
-
Wang, L., Eghbalnia, H.R., Bahrami, A. and Markley, J.L. (2005) Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications. J. Biomol NMR, 32, 13-22.
-
(2005)
J. Biomol NMR
, vol.32
, pp. 13-22
-
-
Wang, L.1
Eghbalnia, H.R.2
Bahrami, A.3
Markley, J.L.4
-
20
-
-
0001078409
-
The STAR File: A new format for electronic data transfer and archiving
-
Hall, S.R. (1991) The STAR File: A new format for electronic data transfer and archiving. J. Chem. Inf. Comput. Sci., 31, 326-333.
-
(1991)
J. Chem. Inf. Comput. Sci
, vol.31
, pp. 326-333
-
-
Hall, S.R.1
-
22
-
-
0006747152
-
STAR dictionary definition language: Initial specification
-
Hall, S.R. and Cook, A.P.F. (1995) STAR dictionary definition language: initial specification. J. Chem. Inf. Comput. Sci., 35, 819-825.
-
(1995)
J. Chem. Inf. Comput. Sci
, vol.35
, pp. 819-825
-
-
Hall, S.R.1
Cook, A.P.F.2
-
23
-
-
0030847767
-
The macromolecular crystallographic information file (mmCIF)
-
Bourne, P.E., Berman, H.M., McMahon, B., Watenpaugh, K.D., Westbrook, J. and Fitzgerald, P.M.D. (1997) The macromolecular crystallographic information file (mmCIF). Meth. Enzymol., 277, 571-590.
-
(1997)
Meth. Enzymol
, vol.277
, pp. 571-590
-
-
Bourne, P.E.1
Berman, H.M.2
McMahon, B.3
Watenpaugh, K.D.4
Westbrook, J.5
Fitzgerald, P.M.D.6
-
24
-
-
0034020917
-
STAR/mmCIF: An extensive ontology for macromolecular structure and beyond
-
Westbrook, J.D. and Bourne, P.E. (2000) STAR/mmCIF: An extensive ontology for macromolecular structure and beyond. Bioinformatics, 16, 159-168.
-
(2000)
Bioinformatics
, vol.16
, pp. 159-168
-
-
Westbrook, J.D.1
Bourne, P.E.2
-
25
-
-
0033907306
-
DEVise and the JavaScreen: Visualization on the Web
-
San Jose, California
-
Yao, H., Wenger, K. and Livny, M. (2000) DEVise and the JavaScreen: visualization on the Web'. Proceedings of the SPIE Conference on Visual Data Exploration, and Analysis. San Jose, California.
-
(2000)
Proceedings of the SPIE Conference on Visual Data Exploration, and Analysis
-
-
Yao, H.1
Wenger, K.2
Livny, M.3
-
26
-
-
0347244224
-
DEVise: Integrated querying and visual exploration of large datasets
-
Tucson, Arizona
-
Livny, M., Ramakrishnan, R., Beyer, K., Chen, G., Donjerkovic, D., Lawande, S., Myllymaki, J. and Wenger, K. (1997) DEVise: Integrated querying and visual exploration of large datasets. Proceedings of ACM SIGMOD. Tucson, Arizona.
-
(1997)
Proceedings of ACM SIGMOD
-
-
Livny, M.1
Ramakrishnan, R.2
Beyer, K.3
Chen, G.4
Donjerkovic, D.5
Lawande, S.6
Myllymaki, J.7
Wenger, K.8
-
27
-
-
0026410969
-
Relationship between Nuclear Magnetic Resonance chemical shift and protein secondary structure
-
Wishart, D.S., Sykes, B.D. and Richards, F.M. (1991) Relationship between Nuclear Magnetic Resonance chemical shift and protein secondary structure. J. Mol. Biol., 222, 311-333.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 311-333
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
28
-
-
0028393784
-
The 13C chemical-shift index: A simple method for the identification of protein secondary structure using 13C chemical shift data
-
Wishart, D.S. and Sykes, B.D. (1994) The 13C chemical-shift index: A simple method for the identification of protein secondary structure using 13C chemical shift data. J. Biomol. NMR, 4, 171-180.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 171-180
-
-
Wishart, D.S.1
Sykes, B.D.2
-
29
-
-
23144441604
-
BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures
-
Doreleijers, J.F., Nederveen, A., Vranken, W., Lin, J., Bonvin, A.M.J.J., Kaptein, R., Markley, J.L. and Ulrich, E.L. (2003) BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures. J. Biomol. NMR, 32, 1-12.
-
(2003)
J. Biomol. NMR
, vol.32
, pp. 1-12
-
-
Doreleijers, J.F.1
Nederveen, A.2
Vranken, W.3
Lin, J.4
Bonvin, A.M.J.J.5
Kaptein, R.6
Markley, J.L.7
Ulrich, E.L.8
-
30
-
-
0037986814
-
BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank
-
Doreleijers, J.F., Mading, S., Maziuk, D., Sojourner, K., Yin, L., Zhu, J., Markley, J.L. and Ulrich, E.L. (2003) BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank. J. Biomol. NMR, 26, 139-146.
-
(2003)
J. Biomol. NMR
, vol.26
, pp. 139-146
-
-
Doreleijers, J.F.1
Mading, S.2
Maziuk, D.3
Sojourner, K.4
Yin, L.5
Zhu, J.6
Markley, J.L.7
Ulrich, E.L.8
-
31
-
-
21044449889
-
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
Nederveen, A., Doreleijers, J.F., Vranken, W., Miller, Z., Spronk, C.A.E.M., Nabuurs, S.B., Guntert, P., Livny, M., Markley, J.L. et al. (2005) RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins, 59, 662-672.
-
(2005)
Proteins
, vol.59
, pp. 662-672
-
-
Nederveen, A.1
Doreleijers, J.F.2
Vranken, W.3
Miller, Z.4
Spronk, C.A.E.M.5
Nabuurs, S.B.6
Guntert, P.7
Livny, M.8
Markley, J.L.9
-
32
-
-
33645795710
-
Comparison of different torsion angle approaches for NMR structure determination
-
Bardiaux, B., Malliavin, T.E., Nilges, M. and Mazur, A.K. (2006) Comparison of different torsion angle approaches for NMR structure determination. J. Biomol. NMR, 34, 153-166.
-
(2006)
J. Biomol. NMR
, vol.34
, pp. 153-166
-
-
Bardiaux, B.1
Malliavin, T.E.2
Nilges, M.3
Mazur, A.K.4
-
33
-
-
2442610955
-
DRESS: A database of REfined solution NMR structures
-
Nabuurs, S.B., Nederveen, A.J., Vranken, W., Doreleijers, J.F., Bonvin, A.M., Vuister, G.W., Vriend, G. and Spronk, C.A. (2004) DRESS: A database of REfined solution NMR structures. Proteins, 55, 483-486.
-
(2004)
Proteins
, vol.55
, pp. 483-486
-
-
Nabuurs, S.B.1
Nederveen, A.J.2
Vranken, W.3
Doreleijers, J.F.4
Bonvin, A.M.5
Vuister, G.W.6
Vriend, G.7
Spronk, C.A.8
-
34
-
-
33646041930
-
TASSER-based refinement of NMR structures
-
Lee, S.Y., Zhang, Y. and Skolnick, J. (2006) TASSER-based refinement of NMR structures. Proteins, 63, 451-456.
-
(2006)
Proteins
, vol.63
, pp. 451-456
-
-
Lee, S.Y.1
Zhang, Y.2
Skolnick, J.3
-
35
-
-
34748821686
-
Programmed ribosomal frameshifting in SIV is induced by a highly structured RNA stem-loop
-
Marcheschi, R.J., Staple, D.W. and Butcher, S.E. (2007) Programmed ribosomal frameshifting in SIV is induced by a highly structured RNA stem-loop. J. Mol. Biol., 26, 652-663.
-
(2007)
J. Mol. Biol
, vol.26
, pp. 652-663
-
-
Marcheschi, R.J.1
Staple, D.W.2
Butcher, S.E.3
-
36
-
-
14344256801
-
Cell-free protein production and labeling protocol for NMR-based structural proteomics
-
Vinarov, D.A., Lytle, B.L., Peterson, F.C., Tyler, E., Volkman, B.F. and Markley, J.L. (2004) Cell-free protein production and labeling protocol for NMR-based structural proteomics. Nat. Methods, 1, 149-153.
-
(2004)
Nat. Methods
, vol.1
, pp. 149-153
-
-
Vinarov, D.A.1
Lytle, B.L.2
Peterson, F.C.3
Tyler, E.4
Volkman, B.F.5
Markley, J.L.6
-
37
-
-
8744267531
-
-
Lytle, B.L., Peterson, F.C., Qui, S.H., Luo, M., Zhao, Q., Markley, J.L. and Volkman, B.F, (2004) Solution structure of a ubiquitin-like domain of tubulin-folding cofactor B. J. Biol. Chem., 279, 46787-46793.
-
Lytle, B.L., Peterson, F.C., Qui, S.H., Luo, M., Zhao, Q., Markley, J.L. and Volkman, B.F, (2004) Solution structure of a ubiquitin-like domain of tubulin-folding cofactor B. J. Biol. Chem., 279, 46787-46793.
-
-
-
-
38
-
-
23644450385
-
Solution structure of thioredoxin h1 from Arabidopsis thaliana
-
Peterson, F.C., Lytle, B.L., Sampath, S., Vinarov, D.A., Tyler, E.M., Shahan, M., Markley, J.L. and Volkman, B.F. (2004) Solution structure of thioredoxin h1 from Arabidopsis thaliana. Protein Sci., 14, 2195-2200.
-
(2004)
Protein Sci
, vol.14
, pp. 2195-2200
-
-
Peterson, F.C.1
Lytle, B.L.2
Sampath, S.3
Vinarov, D.A.4
Tyler, E.M.5
Shahan, M.6
Markley, J.L.7
Volkman, B.F.8
-
39
-
-
14844326275
-
The structural and dynamic basis of Ets-1 DNA binding autoinhibition
-
Lee, G.M., Donaldson, L.W., Pufall, M.A., Kang, H.-S., Pot, I., Graves, B.J. and McIntosh, L.P. (2005) The structural and dynamic basis of Ets-1 DNA binding autoinhibition. J. Biol. Chem., 280, 7088-7099.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 7088-7099
-
-
Lee, G.M.1
Donaldson, L.W.2
Pufall, M.A.3
Kang, H.-S.4
Pot, I.5
Graves, B.J.6
McIntosh, L.P.7
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