-
1
-
-
9144259164
-
Ensembl 2004
-
Birney,E., Andrews,D., Bevan,P., Caccamo,M., Cameron,G., Chen,Y., Clarke,L., Coates,G., Cox,T., Cuff,J. et al. (2004) Ensembl 2004. Nucleic Acids Res., 32, D468-D470.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Birney, E.1
Andrews, D.2
Bevan, P.3
Caccamo, M.4
Cameron, G.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cuff, J.10
-
2
-
-
2442706422
-
An overview of Ensembl
-
Birney,E., Andrews,T.D., Bevan,P., Caccamo,M., Chen,Y., Clarke,L., Coates,G., Cuff,J., Curwen,V., Cutts,T. et al. (2004) An overview of Ensembl. Genome Res., 14, 925-928.
-
(2004)
Genome Res.
, vol.14
, pp. 925-928
-
-
Birney, E.1
Andrews, T.D.2
Bevan, P.3
Caccamo, M.4
Chen, Y.5
Clarke, L.6
Coates, G.7
Cuff, J.8
Curwen, V.9
Cutts, T.10
-
3
-
-
2442666425
-
The Ensembl core software libraries
-
Stabenau,A., McVicker,G., Melsopp,C., Proctor,G., Clamp,M. and Birney,E. (2004) The Ensembl core software libraries. Genome Res. 14, 929-933.
-
(2004)
Genome Res.
, vol.14
, pp. 929-933
-
-
Stabenau, A.1
McVicker, G.2
Melsopp, C.3
Proctor, G.4
Clamp, M.5
Birney, E.6
-
4
-
-
2442718832
-
The Ensembl Web site: Mechanics of a genome browser
-
Stalker,J., Gibbins,B., Meidl,P., Smith,J., Spooner,W., Hotz,H.R. and Cox,A.V. (2004) The Ensembl Web site: mechanics of a genome browser. Genome Res., 14, 951-955.
-
(2004)
Genome Res.
, vol.14
, pp. 951-955
-
-
Stalker, J.1
Gibbins, B.2
Meidl, P.3
Smith, J.4
Spooner, W.5
Hotz, H.R.6
Cox, A.V.7
-
5
-
-
2442689013
-
The Ensembl analysis pipeline
-
Potter,S.C., Clarke,L., Curwen,V., Keenan,S., Mongin,E., Searle,S.M., Stabenau,A., Storey,R. and Clamp,M. (2004) The Ensembl analysis pipeline. Genome Res., 14, 934-941.
-
(2004)
Genome Res.
, vol.14
, pp. 934-941
-
-
Potter, S.C.1
Clarke, L.2
Curwen, V.3
Keenan, S.4
Mongin, E.5
Searle, S.M.6
Stabenau, A.7
Storey, R.8
Clamp, M.9
-
6
-
-
2442712567
-
The Ensembl computing architecture
-
Cuff,J.A., Coates,G.M., Cutts,T.J. and Rae,M. (2004) The Ensembl computing architecture. Genome Res., 14, 971-975.
-
(2004)
Genome Res.
, vol.14
, pp. 971-975
-
-
Cuff, J.A.1
Coates, G.M.2
Cutts, T.J.3
Rae, M.4
-
7
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
Curwen,V., Eyras,E., Andrews,T.D., Clarke,L., Mongin,E., Searle,S.M. and Clamp,M. (2004) The Ensembl automatic gene annotation system. Genome Res., 14, 942-950.
-
(2004)
Genome Res.
, vol.14
, pp. 942-950
-
-
Curwen, V.1
Eyras, E.2
Andrews, T.D.3
Clarke, L.4
Mongin, E.5
Searle, S.M.6
Clamp, M.7
-
8
-
-
2442713832
-
GeneWise and Genomewise
-
Birney,E., Clamp,M. and Durbin,R. (2004) GeneWise and Genomewise. Genome Res., 14, 988-995.
-
(2004)
Genome Res.
, vol.14
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
9
-
-
2442700175
-
ESTGenes: Alternative splicing from ESTs in Ensembl
-
Eyras,E., Caccamo,M., Curwen,V. and Clamp,M. (2004) ESTGenes: alternative splicing from ESTs in Ensembl. Genome Res., 14, 976-987.
-
(2004)
Genome Res.
, vol.14
, pp. 976-987
-
-
Eyras, E.1
Caccamo, M.2
Curwen, V.3
Clamp, M.4
-
10
-
-
2442665184
-
The otter annotation system
-
Searle,S.M., Gilbert,J., Iyer,V. and Clamp,M. (2004) The otter annotation system. Genome Res., 14, 963-970.
-
(2004)
Genome Res.
, vol.14
, pp. 963-970
-
-
Searle, S.M.1
Gilbert, J.2
Iyer, V.3
Clamp, M.4
-
11
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk,A., Keefe,D., Smedley,D., London,D., Spooner,W., Melsopp,C., Hammond,M., Rocca-Serra,P., Cox,T. and Birney,E. (2004) EnsMart: a generic system for fast and flexible access to biological data. Genome Res., 14, 160-169.
-
(2004)
Genome Res.
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
Birney, E.10
-
12
-
-
0037249406
-
Flybase Consortium The FlyBase database of the Drosophila genome projects and community literature
-
Flybase Consortium (2003) The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res., 31, 172-175.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 172-175
-
-
-
13
-
-
0346494826
-
WormBase: A multi-species resource for nematode biology and genomics
-
Harris,T.W., Chen,N., Cunningham,F., Tello-Ruiz,M., Antoshechkin,I., Bastiani,C., Bieri,T., Blasiar,D., Bradnam,K., Chan,J. et al. (2004) WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res., 32, D411-D417.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Harris, T.W.1
Chen, N.2
Cunningham, F.3
Tello-Ruiz, M.4
Antoshechkin, I.5
Bastiani, C.6
Bieri, T.7
Blasiar, D.8
Bradnam, K.9
Chan, J.10
-
14
-
-
1842684068
-
Rat Genome Sequencing Consortium Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Rat Genome Sequencing Consortium (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428, 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
-
15
-
-
4243088097
-
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
-
Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al. (2003) The Genome Sequence of Caenorhabditis briggsae: a Platform for Comparative Genomics. PLoS Biol., 1.
-
(2003)
PLoS Biol.
, pp. 1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
16
-
-
2042437650
-
International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
17
-
-
13444267164
-
International Chicken Genome Sequencing Consortium Sequencing and comparative analysis of the chicken genome
-
in press
-
International Chicken Genome Sequencing Consortium (2004) Sequencing and comparative analysis of the chicken genome. Nature, in press.
-
(2004)
Nature
-
-
-
18
-
-
7244245762
-
International Human Genome Sequencing Consortium Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature, 431, 931-945.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
20
-
-
13444304332
-
The Vertebrate Genome Annotation (Vega)database
-
Ashurst,J., Chen,C.-K., Gilbert,J., Jekosch,K., Keenan,S., Meidl,P., Searle,S., Stalker,J., Storey,R., Trevanion,S. et al. (2004) The Vertebrate Genome Annotation (Vega)database. Nucleic Acids Res., 33, D459-D465.
-
(2004)
Nucleic Acids Res.
, vol.33
-
-
Ashurst, J.1
Chen, C.-K.2
Gilbert, J.3
Jekosch, K.4
Keenan, S.5
Meidl, P.6
Searle, S.7
Stalker, J.8
Storey, R.9
Trevanion, S.10
-
21
-
-
0037251892
-
NCBI Reference Sequence project: Update and current status
-
Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2003) NCBI Reference Sequence project: update and current status. Nucleic Acids Res., 31, 34-37.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 34-37
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
22
-
-
0037250168
-
The UCSC Genome Browser Database
-
Karolchik,D., Baertsch,R., Diekhans,M., Furey,T.S., Hinrichs,A., Lu,Y.T., Roskin,K.M., Schwartz,M., Sugnet,C.W., Thomas,D.J. et al. (2003) The UCSC Genome Browser Database. Nucleic Acids Res., 31, 51-54.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
23
-
-
10244251690
-
UniProt Archive
-
in press
-
Leinonen,R., Diez,F.G., Binns,D., Fleischmann,W., Lopez,R. and Apweiler,R. (2004) UniProt Archive. Bioinformatics, in press.
-
(2004)
Bioinformatics
-
-
Leinonen, R.1
Diez, F.G.2
Binns, D.3
Fleischmann, W.4
Lopez, R.5
Apweiler, R.6
-
24
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz,S., Kent,W.J., Smit,A., Zhang,Z., Baertsch,R., Hardison,R.C., Haussler,D. and Miller,W. (2003) Human-mouse alignments with BLASTZ. Genome Res., 13, 103-107.
-
(2003)
Genome Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
25
-
-
0012306021
-
Apollo: A sequence annotation editor
-
Lewis,S.E., Searle,S.M., Harris,N., Gibson,M., Lyer,V., Richter,J., Wiel,C., Bayraktaroglir,L., Birney,E., Crosby,M.A. et al. (2002) Apollo: a sequence annotation editor. Genome Biol., 3 RESEARCH0082.
-
(2002)
Genome Biol.
, vol.3
-
-
Lewis, S.E.1
Searle, S.M.2
Harris, N.3
Gibson, M.4
Lyer, V.5
Richter, J.6
Wiel, C.7
Bayraktaroglir, L.8
Birney, E.9
Crosby, M.A.10
-
26
-
-
2942547885
-
The Distributed Annotation System
-
Dowell,R.D., Jokerst,R.M., Day,A., Eddy,S.R. and Stein,L. (2001) The Distributed Annotation System. BMC Bioinformatics, 2 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
27
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
Mulder,N.J., Apweiler,R., Attwood,T.K., Bairoch,A., Barrell,D., Bateman,A., Binns,D., Biswas,M., Bradley,P., Bork,P. et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res., 31, 315-318.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
Bateman, A.6
Binns, D.7
Biswas, M.8
Bradley, P.9
Bork, P.10
-
28
-
-
0011096627
-
BioJava: Open Source Components for Bioinformatics
-
Pocock,M.R., Down,T. and Hubbard,T.J.P. (2000) BioJava: Open Source Components for Bioinformatics. Sigbio Newslett., 20, 10-12.
-
(2000)
Sigbio Newslett.
, vol.20
, pp. 10-12
-
-
Pocock, M.R.1
Down, T.2
Hubbard, T.J.P.3
-
29
-
-
0036808531
-
Epigenomics: Genome-wide study of methylation phenomena
-
Novik,K.L., Nimmrich,I., Genc,B., Maier,S., Piepenbrock,C., Olek,A. and Beck,S. (2002) Epigenomics: genome-wide study of methylation phenomena. Curr. Issues Mol. Biol., 4, 111-128.
-
(2002)
Curr. Issues Mol. Biol.
, vol.4
, pp. 111-128
-
-
Novik, K.L.1
Nimmrich, I.2
Genc, B.3
Maier, S.4
Piepenbrock, C.5
Olek, A.6
Beck, S.7
|