-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A. and R. Apweiler. 2000. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28: 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
3
-
-
0033976583
-
The EMBL nucleotide sequence database
-
Baker, W., A. van den Broek, E. Camon, P. Hingamp, P. Sterk, G. Stoesser, and M.A. Tuli. 2000. The EMBL nucleotide sequence database. Nucleic Acids Res. 28: 19-23.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 19-23
-
-
Baker, W.1
Van Den Broek, A.2
Camon, E.3
Hingamp, P.4
Sterk, P.5
Stoesser, G.6
Tuli, M.A.7
-
4
-
-
0033957841
-
ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
-
Corpet, F., F. Servant, J. Gouzy, and D. Kahn. 2000. ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res. 28: 267-269.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 267-269
-
-
Corpet, F.1
Servant, F.2
Gouzy, J.3
Kahn, D.4
-
5
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
Cuff, J.A. and G.J. Barton. 1999. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins 34: 508-519.
-
(1999)
Proteins
, vol.34
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
6
-
-
0028247213
-
Hovergen: A database of homologuous vertebrate genes
-
Duret, L., D. Mouchiroud, and M. Gouy. 1994. Hovergen: A database of homologuous vertebrate genes. Nucleic Acids Res. 22: 2360-2365.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2360-2365
-
-
Duret, L.1
Mouchiroud, D.2
Gouy, M.3
-
7
-
-
0012843776
-
Hovergen: Database and software for comparative analysis of homologous vertebrate genes
-
(ed. S.I. Letovsky), Kluwer Academic Publishers, Boston, MA
-
Duret, L., G. Perrière, and M. Gouy. 1999. Hovergen: Database and software for comparative analysis of homologous vertebrate genes. In Bioinformatics Databases and Systems (ed. S.I. Letovsky), pp. 13-29. Kluwer Academic Publishers, Boston, MA.
-
(1999)
Bioinformatics Databases and Systems
, pp. 13-29
-
-
Duret, L.1
Perrière, G.2
Gouy, M.3
-
8
-
-
0000122573
-
PHYLIP: Phylogeny inference package (version 3.2)
-
Felsenstein, J. 1989. PHYLIP: Phylogeny inference package (version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
9
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel, O. 1997. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14: 685-695.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
-
10
-
-
0029595442
-
SOPMA: Significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments
-
Geourjon C. and G. Deléage. 1995. SOPMA: Significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 11: 681-684.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 681-684
-
-
Geourjon, C.1
Deléage, G.2
-
11
-
-
0022118360
-
ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
-
Gouy, M., C. Gautier, M. Attimonelli, C. Lanave, and G. di Paola. 1985. ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage. Comput. Applic. Biosci. 1: 167-172.
-
(1985)
Comput. Applic. Biosci.
, vol.1
, pp. 167-172
-
-
Gouy, M.1
Gautier, C.2
Attimonelli, M.3
Lanave, C.4
Di Paola, G.5
-
12
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and J.G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. 89: 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
14
-
-
0032944238
-
The PROSITE database, its status in 1999
-
Hofmann, K., P. Bucher, L. Falquet, and A. Bairoch. 1999. The PROSITE database, its status in 1999. Nucleic Acid Res. 27: 215-219.
-
(1999)
Nucleic Acid Res.
, vol.27
, pp. 215-219
-
-
Hofmann, K.1
Bucher, P.2
Falquet, L.3
Bairoch, A.4
-
15
-
-
0028906511
-
Estimating phytogenies from lacunose distances matrices, with special reference to DNA hybridization data
-
Lapointe, F.J. and J.A.W. Kirsch. 1995. Estimating phytogenies from lacunose distances matrices, with special reference to DNA hybridization data. Mol. Biol. Evol. 12: 266-284.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 266-284
-
-
Lapointe, F.J.1
Kirsch, J.A.W.2
-
16
-
-
0031963038
-
Linking up with Entrez
-
McEntyre, J. 1998. Linking up with Entrez. Trends Genet. 14: 39-40.
-
(1998)
Trends Genet.
, vol.14
, pp. 39-40
-
-
McEntyre, J.1
-
17
-
-
0033983822
-
MIPS: A database for genomes and protein sequences
-
Mewes, H.W., D. Frishman, C. Gruber, B. Geier, D. Haase, A. Kaps, K. Lemcke, G. Mannhaupt, F. Pfeiffer, C. Schüller et al. 2000. MIPS: A database for genomes and protein sequences. Nucleic Acids Res. 28: 37-40.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 37-40
-
-
Mewes, H.W.1
Frishman, D.2
Gruber, C.3
Geier, B.4
Haase, D.5
Kaps, A.6
Lemcke, K.7
Mannhaupt, G.8
Pfeiffer, F.9
Schüller, C.10
-
18
-
-
0029789824
-
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
-
Mushegian, A.R. and E.V. Koonin. 1996. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. 93: 10268-10273.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 10268-10273
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
19
-
-
0033609333
-
Evidence of lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima
-
Nelson, K.E., R.A. Clayton, S.R. Gill, M.L. Gwinn, R.J. Dodson, D.H. Haft, E.K. Hickey, J.D. Peterson, W.C. Nelson, K.A. Ketchum et al. 1999. Evidence of lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399: 323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
-
20
-
-
13244292544
-
Modular exchange principles in proteins
-
Patthy, L. 1991. Modular exchange principles in proteins. Curr. Opin. Struct. Biol. 1: 351-361.
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 351-361
-
-
Patthy, L.1
-
21
-
-
0028225861
-
Introns and exons
-
_. 1994. Introns and exons. Curr. Opin. Struct. Biol. 4: 383-392.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 383-392
-
-
-
22
-
-
0025845723
-
Analysis of the gluconate (gnt) operon of Bacillus subtilis
-
Reizer, A., J. Deutscher, M.H. Saier, Jr., and J. Reizer. 1991 Analysis of the gluconate (gnt) operon of Bacillus subtilis. Mol. Microbiol. 5: 1081-1089.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 1081-1089
-
-
Reizer, A.1
Deutscher, J.2
Saier M.H., Jr.3
Reizer, J.4
-
23
-
-
0008675695
-
Protein evolution viewed through Escherichia coli protein sequences: Introducing the notion of structural segment of homology, the module
-
Riley, M. and B. Labedan. 1997. Protein evolution viewed through Escherichia coli protein sequences: Introducing the notion of structural segment of homology, the module. J. Mol. Biol. 269: 1-12.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 1-12
-
-
Riley, M.1
Labedan, B.2
-
24
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J.C. and S. Federhen. 1996. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266: 554-571.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
25
-
-
0033965852
-
ProtoMap: Automatic classification of protein sequences and hierarchy of protein families
-
Yona, G., N. Linial, and M. Linial. 2000. ProtoMap: Automatic classification of protein sequences and hierarchy of protein families. Nucleic Acids Res. 28: 49-55.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 49-55
-
-
Yona, G.1
Linial, N.2
Linial, M.3
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