-
1
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
Pawson T, Nash P. Assembly of cell regulatory systems through protein interaction domains. Science 2003; 300: 445-452.
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
2
-
-
33746363486
-
Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits
-
Bhattacharyya RP, Remenyi A, Yeh BJ, Lim WA. Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits. Annu Rev Biochem 2006; 75: 655-680.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 655-680
-
-
Bhattacharyya, R.P.1
Remenyi, A.2
Yeh, B.J.3
Lim, W.A.4
-
3
-
-
0026492629
-
The rat brain postsynaptic density fraction contains a homolog of the Drosophila discs-large tumor suppressor protein
-
Cho KO, Hunt CA, Kennedy MB. The rat brain postsynaptic density fraction contains a homolog of the Drosophila discs-large tumor suppressor protein. Neuron 1992; 9: 929-942.
-
(1992)
Neuron
, vol.9
, pp. 929-942
-
-
Cho, K.O.1
Hunt, C.A.2
Kennedy, M.B.3
-
4
-
-
0027768992
-
ZO-1, Dlg A and PSD-95/SAP90: homologous proteins in tight, septate and synaptic cell junctions
-
Woods DF, Bryant PJ. ZO-1, Dlg A and PSD-95/SAP90: homologous proteins in tight, septate and synaptic cell junctions. Mech Dev 1993; 44: 85-89.
-
(1993)
Mech Dev
, vol.44
, pp. 85-89
-
-
Woods, D.F.1
Bryant, P.J.2
-
5
-
-
0028882810
-
Clustering of Shaker-type K+ channels by interaction with a family of membrane-associated guanylate kinases
-
Kim E, Niethammer M, Rothschild A, Jan YN, Sheng M. Clustering of Shaker-type K+ channels by interaction with a family of membrane-associated guanylate kinases. Nature 1995; 378: 85-88.
-
(1995)
Nature
, vol.378
, pp. 85-88
-
-
Kim, E.1
Niethammer, M.2
Rothschild, A.3
Jan, Y.N.4
Sheng, M.5
-
6
-
-
34547643210
-
PDZ domains: folding and binding
-
Jemth P, Gianni S. PDZ domains: folding and binding. Biochemistry 2007; 46: 8701-8708.
-
(2007)
Biochemistry
, vol.46
, pp. 8701-8708
-
-
Jemth, P.1
Gianni, S.2
-
7
-
-
5044224260
-
PDZ domain proteins of synapses
-
Kim E, Sheng M. PDZ domain proteins of synapses. Nat Rev Neurosci 2004; 5: 771-781.
-
(2004)
Nat Rev Neurosci
, vol.5
, pp. 771-781
-
-
Kim, E.1
Sheng, M.2
-
8
-
-
0035479827
-
Molecular architecture of adherens junctions
-
Nagafuchi A. Molecular architecture of adherens junctions. Curr Opin Cell Biol 2001; 13: 600-603.
-
(2001)
Curr Opin Cell Biol
, vol.13
, pp. 600-603
-
-
Nagafuchi, A.1
-
9
-
-
0043268862
-
The apical compartment: trafficking pathways, regulators and scaffolding proteins
-
Altschuler Y, Hodson C, Milgram SL. The apical compartment: trafficking pathways, regulators and scaffolding proteins. Curr Opin Cell Biol 2003; 15: 423-429.
-
(2003)
Curr Opin Cell Biol
, vol.15
, pp. 423-429
-
-
Altschuler, Y.1
Hodson, C.2
Milgram, S.L.3
-
10
-
-
15644379801
-
Recognition of unique carboxyl-terminal motifs by distinct PDZ domains
-
Songyang Z, Fanning AS, Fu C, Xu J, Marfatia SM, Chishti AH, Crompton A, Chan AC, Anderson JM, Cantley LC. Recognition of unique carboxyl-terminal motifs by distinct PDZ domains. Science 1997; 275: 73-77.
-
(1997)
Science
, vol.275
, pp. 73-77
-
-
Songyang, Z.1
Fanning, A.S.2
Fu, C.3
Xu, J.4
Marfatia, S.M.5
Chishti, A.H.6
Crompton, A.7
Chan, A.C.8
Anderson, J.M.9
Cantley, L.C.10
-
12
-
-
0030895195
-
PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences
-
Stricker NL, Christopherson KS, Yi BA, Schatz PJ, Raab RW, Dawes G, Bassett DE, Jr, Bredt DS, Li M. PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences. Nat Biotechnol 1997; 15: 336-342.
-
(1997)
Nat Biotechnol
, vol.15
, pp. 336-342
-
-
Stricker, N.L.1
Christopherson, K.S.2
Yi, B.A.3
Schatz, P.J.4
Raab, R.W.5
Dawes, G.6
Bassett Jr., D.E.7
Bredt, D.S.8
Li, M.9
-
13
-
-
0037155199
-
PDZ domains: structural modules for protein complex assembly
-
Hung AY, Sheng M. PDZ domains: structural modules for protein complex assembly. J Biol Chem 2002; 277: 5699-5702.
-
(2002)
J Biol Chem
, vol.277
, pp. 5699-5702
-
-
Hung, A.Y.1
Sheng, M.2
-
14
-
-
0034740693
-
Mechanism and role of PDZ domains in signaling complex assembly
-
Harris BZ, Lim WA. Mechanism and role of PDZ domains in signaling complex assembly. J Cell Sci 2001; 114 (Part 18): 3219-3231.
-
(2001)
J Cell Sci
, vol.114
, Issue.PART 18
, pp. 3219-3231
-
-
Harris, B.Z.1
Lim, W.A.2
-
15
-
-
0037449799
-
Novel mode of ligand recognition by the Erbin PDZ domain
-
Birrane G, Chung J, Ladias JA. Novel mode of ligand recognition by the Erbin PDZ domain. J Biol Chem 2003; 278: 1399-1402.
-
(2003)
J Biol Chem
, vol.278
, pp. 1399-1402
-
-
Birrane, G.1
Chung, J.2
Ladias, J.A.3
-
16
-
-
0034647505
-
Analysis of PDZ domain-ligand interactions using carboxyl-terminal phage display
-
Fuh G, Pisabarro MT, Li Y, Quan C, Lasky LA, Sidhu SS. Analysis of PDZ domain-ligand interactions using carboxyl-terminal phage display. J Biol Chem 2000; 275: 21486-21491.
-
(2000)
J Biol Chem
, vol.275
, pp. 21486-21491
-
-
Fuh, G.1
Pisabarro, M.T.2
Li, Y.3
Quan, C.4
Lasky, L.A.5
Sidhu, S.S.6
-
17
-
-
0037066692
-
The Erbin PDZ domain binds with high affinity and specificity to the carboxyl termini of delta-catenin and ARVCF
-
Laura RP, Witt AS, Held HA, Gerstner R, Deshayes K, Koehler MF, Kosik KS, Sidhu SS, Lasky LA. The Erbin PDZ domain binds with high affinity and specificity to the carboxyl termini of delta-catenin and ARVCF. J Biol Chem 2002; 277: 12906-12914.
-
(2002)
J Biol Chem
, vol.277
, pp. 12906-12914
-
-
Laura, R.P.1
Witt, A.S.2
Held, H.A.3
Gerstner, R.4
Deshayes, K.5
Koehler, M.F.6
Kosik, K.S.7
Sidhu, S.S.8
Lasky, L.A.9
-
18
-
-
54749086397
-
A specificity map for the PDZ domain family
-
Tonikian R, Zhang Y, Sazinsky SL, Currell B, Yeh JH, Reva B, Held HA, Appleton BA, Evangelista M, Wu Y, Xin X, Chan AC, Seshagiri S, Lasky LA, Sander C, Boone C, Bader GD, Sidhu SS. A specificity map for the PDZ domain family. PLoS Biol 2008; 6: e239.
-
(2008)
PLoS Biol
, vol.6
-
-
Tonikian, R.1
Zhang, Y.2
Sazinsky, S.L.3
Currell, B.4
Yeh, J.H.5
Reva, B.6
Held, H.A.7
Appleton, B.A.8
Evangelista, M.9
Wu, Y.10
Xin, X.11
Chan, A.C.12
Seshagiri, S.13
Lasky, L.A.14
Sander, C.15
Boone, C.16
Bader, G.D.17
Sidhu, S.S.18
-
19
-
-
67549119838
-
T7 phage display as a method of peptide ligand discovery for PDZ domain proteins
-
Sharma SC, Memic A, Rupasinghe CN, Duc AC, Spaller MR. T7 phage display as a method of peptide ligand discovery for PDZ domain proteins. Biopolymers 2009; 92: 183-193.
-
(2009)
Biopolymers
, vol.92
, pp. 183-193
-
-
Sharma, S.C.1
Memic, A.2
Rupasinghe, C.N.3
Duc, A.C.4
Spaller, M.R.5
-
20
-
-
33646679140
-
Uncovering quantitative protein interaction networks for mouse PDZ domains using protein microarrays
-
Stiffler MA, Grantcharova VP, Sevecka M, MacBeath G. Uncovering quantitative protein interaction networks for mouse PDZ domains using protein microarrays. J Am Chem Soc 2006; 128: 5913-5922.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 5913-5922
-
-
Stiffler, M.A.1
Grantcharova, V.P.2
Sevecka, M.3
MacBeath, G.4
-
21
-
-
34547127612
-
PDZ domain binding selectivity is optimized across the mouse proteome
-
Stiffler MA, Chen JR, Grantcharova VP, Lei Y, Fuchs D, Allen JE, Zaslavskaia LA, MacBeath G. PDZ domain binding selectivity is optimized across the mouse proteome. Science 2007; 317: 364-369.
-
(2007)
Science
, vol.317
, pp. 364-369
-
-
Stiffler, M.A.1
Chen, J.R.2
Grantcharova, V.P.3
Lei, Y.4
Fuchs, D.5
Allen, J.E.6
Zaslavskaia, L.A.7
MacBeath, G.8
-
22
-
-
51349085386
-
Predicting PDZ domain-peptide interactions from primary sequences
-
Chen JR, Chang BH, Allen JE, Stiffler MA, MacBeath G. Predicting PDZ domain-peptide interactions from primary sequences. Nat Biotechnol 2008; 26: 1041-1045.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1041-1045
-
-
Chen, J.R.1
Chang, B.H.2
Allen, J.E.3
Stiffler, M.A.4
MacBeath, G.5
-
23
-
-
35649004472
-
Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3
-
Runyon ST, Zhang Y, Appleton BA, Sazinsky SL, Wu P, Pan B, Wiesmann C, Skelton NJ, Sidhu SS. Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3. Protein Sci 2007; 16: 2454-2471.
-
(2007)
Protein Sci
, vol.16
, pp. 2454-2471
-
-
Runyon, S.T.1
Zhang, Y.2
Appleton, B.A.3
Sazinsky, S.L.4
Wu, P.5
Pan, B.6
Wiesmann, C.7
Skelton, N.J.8
Sidhu, S.S.9
-
24
-
-
0036301446
-
Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the β2-β3 loop to PDZ domain-ligand interactions
-
Kozlov G, Banville D, Gehring K, Ekiel I. Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the β2-β3 loop to PDZ domain-ligand interactions. J Mol Biol 2002; 320: 813-820.
-
(2002)
J Mol Biol
, vol.320
, pp. 813-820
-
-
Kozlov, G.1
Banville, D.2
Gehring, K.3
Ekiel, I.4
-
25
-
-
33947412686
-
Structures of a human papillomavirus (HPV) E6 polypeptide bound to MAGUK proteins: mechanisms of targeting tumor suppressors by a high-risk HPV oncoprotein
-
Zhang Y, Dasgupta J, Ma RZ, Banks L, Thomas M, Chen XS. Structures of a human papillomavirus (HPV) E6 polypeptide bound to MAGUK proteins: mechanisms of targeting tumor suppressors by a high-risk HPV oncoprotein. J Virol 2007; 81: 3618-3626.
-
(2007)
J Virol
, vol.81
, pp. 3618-3626
-
-
Zhang, Y.1
Dasgupta, J.2
Ma, R.Z.3
Banks, L.4
Thomas, M.5
Chen, X.S.6
-
26
-
-
33845186553
-
Demonstration of long-range interactions in a PDZ domain by NMR, kinetics, and protein engineering
-
Gianni S, Walma T, Arcovito A, Calosci N, Bellelli A, Engstrom A, Travaglini-Allocatelli C, Brunori M, Jemth P, Vuister GW. Demonstration of long-range interactions in a PDZ domain by NMR, kinetics, and protein engineering. Structure 2006; 14: 1801-1809.
-
(2006)
Structure
, vol.14
, pp. 1801-1809
-
-
Gianni, S.1
Walma, T.2
Arcovito, A.3
Calosci, N.4
Bellelli, A.5
Engstrom, A.6
Travaglini-Allocatelli, C.7
Brunori, M.8
Jemth, P.9
Vuister, G.W.10
-
27
-
-
0031985105
-
Specific interactions between the syntrophin PDZ domain and voltage-gated sodium channels
-
Schultz J, Hoffmuller U, Krause G, Ashurst J, Macias MJ, Schmieder P, Schneider-Mergener J, Oschkinat H. Specific interactions between the syntrophin PDZ domain and voltage-gated sodium channels. Nat Struct Biol 1998; 5: 19-24.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 19-24
-
-
Schultz, J.1
Hoffmuller, U.2
Krause, G.3
Ashurst, J.4
Macias, M.J.5
Schmieder, P.6
Schneider-Mergener, J.7
Oschkinat, H.8
-
28
-
-
54249112326
-
Structural basis of β-catenin recognition by Tax-interacting protein-1
-
Zhang J, Yan X, Shi C, Yang X, Guo Y, Tian C, Long J, Shen Y. Structural basis of β-catenin recognition by Tax-interacting protein-1. J Mol Biol 2008; 384: 255-263.
-
(2008)
J Mol Biol
, vol.384
, pp. 255-263
-
-
Zhang, J.1
Yan, X.2
Shi, C.3
Yang, X.4
Guo, Y.5
Tian, C.6
Long, J.7
Shen, Y.8
-
29
-
-
0037470140
-
Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain
-
Skelton NJ, Koehler MF, Zobel K, Wong WL, Yeh S, Pisabarro MT, Yin JP, Lasky LA, Sidhu SS. Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain. J Biol Chem 2003; 278: 7645-7654.
-
(2003)
J Biol Chem
, vol.278
, pp. 7645-7654
-
-
Skelton, N.J.1
Koehler, M.F.2
Zobel, K.3
Wong, W.L.4
Yeh, S.5
Pisabarro, M.T.6
Yin, J.P.7
Lasky, L.A.8
Sidhu, S.S.9
-
30
-
-
77954044144
-
Interaction prediction and classification of PDZ domains
-
Kalyoncu S, Keskin O, Gursoy A. Interaction prediction and classification of PDZ domains. BMC Bioinformatics 2010; 11: 357.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 357
-
-
Kalyoncu, S.1
Keskin, O.2
Gursoy, A.3
-
31
-
-
77957737014
-
Proteome scanning to predict PDZ domain interactions using support vector machines
-
Hui S, Bader GD. Proteome scanning to predict PDZ domain interactions using support vector machines. BMC Bioinformatics 2010; 11: 507.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 507
-
-
Hui, S.1
Bader, G.D.2
-
32
-
-
77956730468
-
Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains
-
Smith CA, Kortemme T. Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains. J Mol Biol 2010; 402: 460-474.
-
(2010)
J Mol Biol
, vol.402
, pp. 460-474
-
-
Smith, C.A.1
Kortemme, T.2
-
33
-
-
39049111013
-
Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain
-
Hou T, Zhang W, Case DA, Wang W. Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain. J Mol Biol 2008; 376: 1201-1214.
-
(2008)
J Mol Biol
, vol.376
, pp. 1201-1214
-
-
Hou, T.1
Zhang, W.2
Case, D.A.3
Wang, W.4
-
34
-
-
66149146342
-
Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains
-
Hou T, Xu Z, Zhang W, McLaughlin WA, Case DA, Xu Y, Wang W. Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains. Mol Cell Proteomics 2009; 8: 639-649.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 639-649
-
-
Hou, T.1
Xu, Z.2
Zhang, W.3
McLaughlin, W.A.4
Case, D.A.5
Xu, Y.6
Wang, W.7
-
35
-
-
61449101624
-
Predicting drug resistance of the HIV-1 protease using molecular interaction energy components
-
Hou T, Zhang W, Wang J, Wang W. Predicting drug resistance of the HIV-1 protease using molecular interaction energy components. Proteins 2009; 74: 837-846.
-
(2009)
Proteins
, vol.74
, pp. 837-846
-
-
Hou, T.1
Zhang, W.2
Wang, J.3
Wang, W.4
-
36
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000; 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
37
-
-
0037416217
-
Structure of Cdc42 in a complex with the GTPase-binding domain of the cell polarity protein, Par6
-
Garrard SM, Capaldo CT, Gao L, Rosen MK, Macara IG, Tomchick DR. Structure of Cdc42 in a complex with the GTPase-binding domain of the cell polarity protein, Par6. EMBO J 2003; 22: 1125-1133.
-
(2003)
EMBO J
, vol.22
, pp. 1125-1133
-
-
Garrard, S.M.1
Capaldo, C.T.2
Gao, L.3
Rosen, M.K.4
Macara, I.G.5
Tomchick, D.R.6
-
38
-
-
80053968052
-
-
Accylrys Inc. San Diego: Accelrys
-
Accylrys Inc. Discovery Studio 2.1. San Diego: Accelrys; 2009.
-
(2009)
Discovery Studio 2.1
-
-
-
39
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov GG, Shapovalov MV, Dunbrack RL, Jr. Improved prediction of protein side-chain conformations with SCWRL4. Proteins 2009; 77: 778-795.
-
(2009)
Proteins
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack Jr., R.L.3
-
40
-
-
70149112207
-
-
San Francisco: University of California
-
Case DA, Darden TA, Cheatham TE, Simmerling CL, Wang J, Duke RE, Luo R, Crowley M, Walker RC, Zhang W, Merz KM, Wang B, Hayik S, Roitberg A, Seabra G, Kolossvary I, Wong KF, Paesani F, Vanicek J, Wu X, Brozell SR, Steinbrecher T, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Mathews DH, Seetin MG, Sagui C, Babin V, Kollman PA. AMBER10. San Francisco: University of California; 2008.
-
(2008)
AMBER10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Walker, R.C.9
Zhang, W.10
Merz, K.M.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossvary, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Wu, X.20
Brozell, S.R.21
Steinbrecher, T.22
Gohlke, H.23
Yang, L.24
Tan, C.25
Mongan, J.26
Hornak, V.27
Cui, G.28
Mathews, D.H.29
Seetin, M.G.30
Sagui, C.31
Babin, V.32
Kollman, P.A.33
more..
-
41
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, Caldwell J, Wang J, Kollman P. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J Comput Chem 2003; 24: 1999-2012.
-
(2003)
J Comput Chem
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.12
Kollman, P.13
-
42
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML. Comparison of simple potential functions for simulating liquid water. J Chem Phys 1983; 79: 926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
43
-
-
33646940952
-
Numerical-integration of Cartesian equations of motion of a system with constraints-molecular-dynamics of N-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical-integration of Cartesian equations of motion of a system with constraints-molecular-dynamics of N-alkanes. J Comput Phys 1977; 23: 327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
44
-
-
33846823909
-
Particle Mesh Ewald-an N. Log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L. Particle Mesh Ewald-an N. Log(N) method for Ewald sums in large systems. J Chem Phys 1993; 98: 10089-10092.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
45
-
-
20644449471
-
Modification of the generalized Born model suitable for macromolecules
-
Onufriev A, Bashford D, Case DA. Modification of the generalized Born model suitable for macromolecules. J Phys Chem B 2000; 104: 3712-3720.
-
(2000)
J Phys Chem B
, vol.104
, pp. 3712-3720
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
46
-
-
1842479952
-
Exploring protein native states and large-scale conformational changes with a modified generalized born model
-
Onufriev A, Bashford D, Case DA. Exploring protein native states and large-scale conformational changes with a modified generalized born model. Proteins 2004; 55: 383-394.
-
(2004)
Proteins
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
47
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
49
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 2004; 25: 1605-1612.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
51
-
-
0037816293
-
Molecular roots of degenerate specificity in syntenin's PDZ2 domain: reassessment of the PDZ recognition paradigm
-
Kang BS, Cooper DR, Devedjiev Y, Derewenda U, Derewenda ZS. Molecular roots of degenerate specificity in syntenin's PDZ2 domain: reassessment of the PDZ recognition paradigm. Structure 2003; 11: 845-853.
-
(2003)
Structure
, vol.11
, pp. 845-853
-
-
Kang, B.S.1
Cooper, D.R.2
Devedjiev, Y.3
Derewenda, U.4
Derewenda, Z.S.5
-
52
-
-
0035827518
-
Structural basis of the Na+/H+ exchanger regulatory factor PDZ1 interaction with the carboxyl-terminal region of the cystic fibrosis transmembrane conductance regulator
-
Karthikeyan S, Leung T, Ladias JA. Structural basis of the Na+/H+ exchanger regulatory factor PDZ1 interaction with the carboxyl-terminal region of the cystic fibrosis transmembrane conductance regulator. J Biol Chem 2001; 276: 19683-19686.
-
(2001)
J Biol Chem
, vol.276
, pp. 19683-19686
-
-
Karthikeyan, S.1
Leung, T.2
Ladias, J.A.3
-
53
-
-
0030604722
-
Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ
-
Doyle DA, Lee A, Lewis J, Kim E, Sheng M, MacKinnon R. Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Cell 1996; 85: 1067-1076.
-
(1996)
Cell
, vol.85
, pp. 1067-1076
-
-
Doyle, D.A.1
Lee, A.2
Lewis, J.3
Kim, E.4
Sheng, M.5
MacKinnon, R.6
-
54
-
-
0348111461
-
Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization
-
Im YJ, Lee JH, Park SH, Park SJ, Rho SH, Kang GB, Kim E, Eom SH. Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization. J Biol Chem 2003; 278: 48099-48104.
-
(2003)
J Biol Chem
, vol.278
, pp. 48099-48104
-
-
Im, Y.J.1
Lee, J.H.2
Park, S.H.3
Park, S.J.4
Rho, S.H.5
Kang, G.B.6
Kim, E.7
Eom, S.H.8
-
55
-
-
0037424515
-
Crystal structure of GRIP1 PDZ6-peptide complex reveals the structural basis for class II PDZ target recognition and PDZ domain-mediated multimerization
-
Im YJ, Park SH, Rho SH, Lee JH, Kang GB, Sheng M, Kim E, Eom SH. Crystal structure of GRIP1 PDZ6-peptide complex reveals the structural basis for class II PDZ target recognition and PDZ domain-mediated multimerization. J Biol Chem 2003; 278: 8501-8507.
-
(2003)
J Biol Chem
, vol.278
, pp. 8501-8507
-
-
Im, Y.J.1
Park, S.H.2
Rho, S.H.3
Lee, J.H.4
Kang, G.B.5
Sheng, M.6
Kim, E.7
Eom, S.H.8
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