-
1
-
-
0037151088
-
Catalytic properties of rice α-oxygenase. A comparison with mammalian prostaglandin H synthases
-
DOI 10.1074/jbc.M110420200
-
Koeduka, T., Matsui, K., Akakabe, Y., and Kajiwara, T. (2002) Catalytic properties of rice α-oxygenase: a comparison with mammalian prostaglandin H synthases J. Biol. Chem. 277, 22648-22655 (Pubitemid 34967242)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.25
, pp. 22648-22655
-
-
Koeduka, T.1
Matsui, K.2
Akakabe, Y.3
Kajiwara, T.4
-
2
-
-
0033609815
-
α-Oxidation of fatty acids in higher plants. Identification of a pathogen-inducible oxygenase (PIOX) as an α-dioxygenase and biosynthesis of 2-hydroperoxylinolenic acid
-
Hamberg, M., Sanz, A., and Castresana, C. (1999) α-oxidation of fatty acids in higher plants. Identification of a pathogen-inducible oxygenase (PIOX) as an α-dioxygenase and biosynthesis of 2-hydroperoxylinolenic acid J. Biol. Chem. 274, 24503-24513
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 24503-24513
-
-
Hamberg, M.1
Sanz, A.2
Castresana, C.3
-
3
-
-
3142766245
-
Characterization of the heme environment in Arabidopsis thaliana fatty acid α-dioxygenase-1
-
DOI 10.1074/jbc.M401779200
-
Liu, W., Rogge, C. E., Bambai, B., Palmer, G., Tsai, A.-L., and Kulmacz, R. J. (2004) Characterization of the Heme Environment in Arabidopsis thaliana Fatty Acid α -Dioxygenase-1 J. Biol. Chem. 279, 29805-29815 (Pubitemid 38915864)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.28
, pp. 29805-29815
-
-
Liu, W.1
Rogge, C.E.2
Bambai, B.3
Palmer, G.4
Tsai, A.-L.5
Kulmacz, R.J.6
-
4
-
-
52149110322
-
Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes
-
Lee, D.-S., Nioche, P., Hamberg, M., and Raman, C. S. (2008) Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes Nature 455, 363-368
-
(2008)
Nature
, vol.455
, pp. 363-368
-
-
Lee, D.-S.1
Nioche, P.2
Hamberg, M.3
Raman, C.S.4
-
5
-
-
67349170007
-
Biosynthesis of oxylipins in non-mammals
-
Andreou, A., Brodhun, F., and Feussner, I. (2009) Biosynthesis of oxylipins in non-mammals Prog. Lipid Res. 48, 148-170
-
(2009)
Prog. Lipid Res.
, vol.48
, pp. 148-170
-
-
Andreou, A.1
Brodhun, F.2
Feussner, I.3
-
6
-
-
0036013783
-
Fatty acid oxidation and signaling in apoptosis
-
DOI 10.1515/BC.2002.046
-
Tang, D. G., La, E., Kern, J., and Kehrer, J. P. (2002) Fatty acid oxidation and signaling in apoptosis Biol. Chem. 383, 425-442 (Pubitemid 34516324)
-
(2002)
Biological Chemistry
, vol.383
, Issue.3-4
, pp. 425-442
-
-
Tang, D.G.1
La, E.2
Kern, J.3
Kehrer, J.P.4
-
7
-
-
23044506648
-
Rice fatty acid α-dioxygenase is induced by pathogen attack and heavy metal stress: Activation through jasmonate signaling
-
DOI 10.1016/j.jplph.2004.11.003, PII S0176161705000246
-
Koeduka, T., Matsui, K., Hasegawa, M., Akakabe, Y., and Kajiwara, T. (2005) Rice fatty acid α -dioxygenase is induced by pathogen attack and heavy metal stress: Activation through jasmonate signaling J. Plant Physiol. 162, 912-920 (Pubitemid 41059480)
-
(2005)
Journal of Plant Physiology
, vol.162
, Issue.8
, pp. 912-920
-
-
Koeduka, T.1
Matsui, K.2
Hasegawa, M.3
Akakabe, Y.4
Kajiwara, T.5
-
8
-
-
59249095048
-
Fatty acid α-dioxygenase from Pisum sativum: Temporal and spatial regulation during germination and plant development
-
Meisner, A. K., Saffert, A., Schreier, P., and Schoen, A. (2009) Fatty acid α-dioxygenase from Pisum sativum: temporal and spatial regulation during germination and plant development J. Plant Physiol. 166, 333-343
-
(2009)
J. Plant Physiol.
, vol.166
, pp. 333-343
-
-
Meisner, A.K.1
Saffert, A.2
Schreier, P.3
Schoen, A.4
-
9
-
-
0346434165
-
Activation of the fatty acid α-dioxygenase pathway during bacterial infection of tobacco leaves: Formation of oxylipins protecting against cell death
-
DOI 10.1074/jbc.M310514200
-
Hamberg, M., Sanz, A., Rodriguez, M. J., Calvo, A. P., and Castresana, C. (2003) Activation of the fatty acid α -dioxygenase pathway during bacterial infection of tobacco leaves: formation of oxylipins protecting against cell death J. Biol. Chem. 278, 51796-51805 (Pubitemid 38020426)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.51
, pp. 51796-51805
-
-
Hamberg, M.1
Sanz, A.2
Rodriguez, M.J.3
Calvo, A.P.4
Castresana, C.5
-
10
-
-
80052016852
-
Oxylipins and relevant enzymes in plant defence, Adv
-
Cardinale, F., Fammartino, A., Tamietti, G., Feussner, I., and Esquerre-Tugaye, M.-T. (2010) Oxylipins and relevant enzymes in plant defence, Adv Plant Physiol. 11, 215-225
-
(2010)
Plant Physiol.
, vol.11
, pp. 215-225
-
-
Cardinale, F.1
Fammartino, A.2
Tamietti, G.3
Feussner, I.4
Esquerre-Tugaye, M.-T.5
-
11
-
-
79952833264
-
Oxylipins in fungi
-
Brodhun, F. and Feussner, I. (2011) Oxylipins in fungi FEBS J. 278, 1047-1063
-
(2011)
FEBS J.
, vol.278
, pp. 1047-1063
-
-
Brodhun, F.1
Feussner, I.2
-
12
-
-
79151469191
-
Expression of 5,8-LDS of Aspergillus fumigatus and its dioxygenase domain. A comparison with 7,8-LDS, 10-dioxygenase, and cyclooxygenase
-
Hoffmann, I., Jerneren, F., Garscha, U., and Oliw, E. H. (2011) Expression of 5,8-LDS of Aspergillus fumigatus and its dioxygenase domain. A comparison with 7,8-LDS, 10-dioxygenase, and cyclooxygenase Arch. Biochem. Biophys. 506, 216-222
-
(2011)
Arch. Biochem. Biophys.
, vol.506
, pp. 216-222
-
-
Hoffmann, I.1
Jerneren, F.2
Garscha, U.3
Oliw, E.H.4
-
13
-
-
36849034824
-
Identification of dioxygenases required for Aspergillus development: Studies of products, stereochemistry, and the reaction mechanism
-
DOI 10.1074/jbc.M705366200
-
Garscha, U., Jerneren, F., Chung, D., Keller, N. P., Hamberg, M., and Oliw, E. H. (2007) Identification of Dioxygenases Required for Aspergillus Development: Studies of Products, Stereochemistry, and the Reaction Mechanism J. Biol. Chem. 282, 34707-34718 (Pubitemid 350232447)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.48
, pp. 34707-34718
-
-
Garscha, U.1
Jerneren, F.2
Chung, D.3
Keller, N.P.4
Hamberg, M.5
Oliw, E.H.6
-
14
-
-
67649405066
-
Leucine/Valine Residues Direct Oxygenation of Linoleic Acid by (10R)- and (8R)-Dioxygenases: Expression and site-directed mutagenesis of (10R)-dioxygenase with epoxyalcohol synthase activity
-
Garscha, U. and Oliw, E. H. (2009) Leucine/Valine Residues Direct Oxygenation of Linoleic Acid by (10R)- and (8R)-Dioxygenases: expression and site-directed mutagenesis of (10R)-dioxygenase with epoxyalcohol synthase activity J. Biol. Chem. 284, 13755-13765
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13755-13765
-
-
Garscha, U.1
Oliw, E.H.2
-
15
-
-
0037898985
-
Mechanism of Free Radical Oxygenation of Polyunsaturated Fatty Acids by Cyclooxygenases
-
Rouzer, C. A. and Marnett, L. J. (2003) Mechanism of Free Radical Oxygenation of Polyunsaturated Fatty Acids by Cyclooxygenases Chem. Rev. 103, 2239-2304
-
(2003)
Chem. Rev.
, vol.103
, pp. 2239-2304
-
-
Rouzer, C.A.1
Marnett, L.J.2
-
16
-
-
72049111244
-
Prostaglandin H synthase: Resolved and unresolved mechanistic issues
-
Tsai, A.-L. and Kulmacz, R. J. (2010) Prostaglandin H synthase: Resolved and unresolved mechanistic issues Arch. Biochem. Biophys. 493, 103-124
-
(2010)
Arch. Biochem. Biophys.
, vol.493
, pp. 103-124
-
-
Tsai, A.-L.1
Kulmacz, R.J.2
-
17
-
-
50249166700
-
Evidence for Protein Radical-Mediated Nuclear Tunneling in Fatty Acid α-Oxygenase
-
Gupta, A., Mukherjee, A., Matsui, K., and Roth, J. P. (2008) Evidence for Protein Radical-Mediated Nuclear Tunneling in Fatty Acid α-Oxygenase J. Am. Chem. Soc. 130, 11274-11275
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 11274-11275
-
-
Gupta, A.1
Mukherjee, A.2
Matsui, K.3
Roth, J.P.4
-
18
-
-
78651393044
-
Catalytic Mechanism of a Heme and Tyrosyl Radical-Containing Fatty Acid α-(Di)oxygenase
-
Mukherjee, A., Angeles-Boza, A. M., Huff, G. S., and Roth, J. P. (2011) Catalytic Mechanism of a Heme and Tyrosyl Radical-Containing Fatty Acid α-(Di)oxygenase J. Am. Chem. Soc. 133, 227-238
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 227-238
-
-
Mukherjee, A.1
Angeles-Boza, A.M.2
Huff, G.S.3
Roth, J.P.4
-
19
-
-
33645759966
-
Purification, crystallization and preliminary X-ray diffraction analysis of pathogen-inducible oxygenase (PIOX) from Oryza sativa
-
Lloyd, T., Krol, A., Campanaro, D., and Malkowski, M. (2006) Purification, crystallization and preliminary X-ray diffraction analysis of pathogen-inducible oxygenase (PIOX) from Oryza sativa Acta Crystallogr., Sect. F F62, 365-367
-
(2006)
Acta Crystallogr., Sect. F
, vol.62
, pp. 365-367
-
-
Lloyd, T.1
Krol, A.2
Campanaro, D.3
Malkowski, M.4
-
20
-
-
54049104961
-
His-311 and Arg-559 Are Key Residues Involved in Fatty Acid Oxygenation in Pathogen-inducible Oxygenase
-
Koszelak-Rosenblum, M., Krol, A. C., Simmons, D. M., Goulah, C. C., Wroblewski, L., and Malkowski, M. G. (2008) His-311 and Arg-559 Are Key Residues Involved in Fatty Acid Oxygenation in Pathogen-inducible Oxygenase J. Biol. Chem. 283, 24962-24971
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 24962-24971
-
-
Koszelak-Rosenblum, M.1
Krol, A.C.2
Simmons, D.M.3
Goulah, C.C.4
Wroblewski, L.5
Malkowski, M.G.6
-
21
-
-
0032508393
-
Role of D1-His190 in proton-coupled electron transfer reactions in photosystem II: A chemical complementation study
-
DOI 10.1021/bi980510u
-
Hays, A.-M. A., Vassiliev, I. R., Golbeck, J. H., and Debus, R. J. (1998) Role of D1-His190 in proton-coupled electron transfer reactions in photosystem II: A chemical complementation study Biochemistry 37, 11352-11365 (Pubitemid 28394885)
-
(1998)
Biochemistry
, vol.37
, Issue.32
, pp. 11352-11365
-
-
Hays, A.-M.A.1
Vassiliev, I.R.2
Golbeck, J.H.3
Debus, R.J.4
-
22
-
-
0041806642
-
Resolving intermediates in biological proton-coupled electron transfer: A tyrosyl radical prior to proton movement
-
DOI 10.1073/pnas.1530926100
-
Faller, P., Goussias, C., Rutherford, A. W., and Un, S. (2003) Resolving intermediates in biological proton-coupled electron transfer: A tyrosyl radical prior to proton movement Proc. Natl. Acad. Sci. U. S. A. 100, 8732-8735 (Pubitemid 36899167)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.15
, pp. 8732-8735
-
-
Faller, P.1
Goussias, C.2
Rutherford, A.W.3
Un, S.4
-
23
-
-
2442548491
-
Proton-Coupled Electron Transfer in Soybean Lipoxygenase
-
DOI 10.1021/ja039606o
-
Hatcher, E., Soudackov, A. V., and Hammes-Schiffer, S. (2004) Proton-Coupled Electron Transfer in Soybean Lipoxygenase J. Am. Chem. Soc. 126, 5763-5775 (Pubitemid 38621415)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.18
, pp. 5763-5775
-
-
Hatcher, E.1
Soudackov, A.V.2
Hammes-Schiffer, S.3
-
25
-
-
0033624614
-
+ oxidoreductase active enzyme from germinating Pea rationalizing α-oxidation of fatty acids in plants
-
Saffert, A., Hartmann-Schreier, J., Schon, A., and Schreier, P. A. (2000) A dual function α-dioxygenase-peroxidase and NAD+ oxidoreductase active enzyme from germinating pea rationalizing α-oxidation of fatty acids in plants Plant Physiol. 123, 1545-1551 (Pubitemid 30656710)
-
(2000)
Plant Physiology
, vol.123
, Issue.4
, pp. 1545-1551
-
-
Saffert, A.1
Hartmann-Schreier, J.2
Schon, A.3
Schreier, P.4
-
26
-
-
0003536299
-
-
3 rd ed. pp, Oxford University Press, London.
-
Halliwell, B. and Gutteridge, J. M. C. (1999) Free Radicals In Biology and Medicine, 3 rd ed., pp 1-22, Oxford University Press, London.
-
(1999)
Free Radicals in Biology and Medicine
, pp. 1-22
-
-
Halliwell, B.1
Gutteridge, J.M.C.2
-
27
-
-
0003899626
-
-
pp, Chapman & Hall, London.
-
Valentine, J. S., Foote, C. S., Greenberg, A., and Liebman, J. F. (1995) Active Oxygen in Biochemistry, pp 276-312, Chapman & Hall, London.
-
(1995)
Active Oxygen in Biochemistry
, pp. 276-312
-
-
Valentine, J.S.1
Foote, C.S.2
Greenberg, A.3
Liebman, J.F.4
-
28
-
-
35348956350
-
Enzymatic transition state theory and transition state analogue design
-
DOI 10.1074/jbc.R700018200
-
Schramm, V. L. (2007) Enzymatic Transition State Theory and transition state design J. Biol. Chem. 282, 28297-28300 (Pubitemid 47605999)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.39
, pp. 28297-28300
-
-
Schramm, V.L.1
-
29
-
-
0023653927
-
Simultaneous determinations of hemes a, b, and c from pyridine hemochrome spectra
-
Berry, E. A. and Trumpower, B. L. (1987) Simultaneous determinations of hemes a, b, and c from pyridine hemochrome spectra Anal. Biochem. 161, 1-15
-
(1987)
Anal. Biochem.
, vol.161
, pp. 1-15
-
-
Berry, E.A.1
Trumpower, B.L.2
-
31
-
-
0020484823
-
Investigation of diffusion-limited rates of chymotrypsin reactions by viscosity variation
-
Brouwer, A. C. and Kirsch, J. F. (1982) Investigation of diffusion-limited rates of chymotrypsin reactions by viscosity variation Biochemistry 21, 1302-1307
-
(1982)
Biochemistry
, vol.21
, pp. 1302-1307
-
-
Brouwer, A.C.1
Kirsch, J.F.2
-
32
-
-
0001183683
-
Meaning of diffusion-controlled association rate constants in enzymology
-
Nakatani, H. and Dunford, H. B. (1979) Meaning of diffusion-controlled association rate constants in enzymology J. Phys. Chem. 83, 2662-2665
-
(1979)
J. Phys. Chem.
, vol.83
, pp. 2662-2665
-
-
Nakatani, H.1
Dunford, H.B.2
-
33
-
-
0020400743
-
Viscosity dependence of the kinetics of the diffusion-controlled reaction of carbon monoxide and myoglobin
-
DOI 10.1021/bi00261a015
-
Hasinoff, B. B. and Chishti, S. B. (1982) Viscosity dependence of the kinetics of the diffusion-controlled reaction of carbon monoxide and myoglobin Biochemistry 21, 4275-4278 (Pubitemid 13197443)
-
(1982)
Biochemistry
, vol.21
, Issue.18
, pp. 4275-4278
-
-
Hasinoff, B.B.1
Chishti, S.B.2
-
34
-
-
0023038958
-
On the rates of enzymatic, protein and model compound reactions: The importance of diffusion control
-
DOI 10.1016/0162-0134(86)80090-3
-
Dunford, H. B. and Hasinoff, B. B. (1986) On the rates of enzymic, protein and model compound reactions: the importance of diffusion control J. Inorg. Biochem. 28, 263-269 (Pubitemid 17216012)
-
(1986)
Journal of Inorganic Biochemistry
, vol.28
, Issue.2-3
, pp. 263-269
-
-
Dunford, H.B.1
Hasinoff, B.B.2
-
35
-
-
6444222991
-
Use of glass electrodes to measure acidities in deuterium oxide
-
Glasoe, P. K. and Long, F. A. (1960) Use of glass electrodes to measure acidities in deuterium oxide J. Phys. Chem. 64, 188-190
-
(1960)
J. Phys. Chem.
, vol.64
, pp. 188-190
-
-
Glasoe, P.K.1
Long, F.A.2
-
37
-
-
0001062752
-
Photosynthetic fractionation of the stable isotopes of oxygen and carbon
-
Guy, R. D., Fogel, M. L., and Berry, J. A. (1993) Photosynthetic fractionation of the stable isotopes of oxygen and carbon Plant Physiol. 101, 37-47
-
(1993)
Plant Physiol.
, vol.101
, pp. 37-47
-
-
Guy, R.D.1
Fogel, M.L.2
Berry, J.A.3
-
39
-
-
18144378706
-
Accurate and Simple Density Functional for the Electronic Exchange Energy: Generalized Gradient Approximation
-
Perdew, J. P. and Wang, Y. (1986) Accurate and Simple Density Functional for the Electronic Exchange Energy: Generalized Gradient Approximation Phys. Rev. B 33, 8800-8802
-
(1986)
Phys. Rev. B
, vol.33
, pp. 8800-8802
-
-
Perdew, J.P.1
Wang, Y.2
-
40
-
-
0002851019
-
Unified Theory of Exchange and Correlation beyond the Local Density Approximation
-
in (Ziesche, P. and Eschrig, H. Eds.) pp, Akademie Verlag, Berlin.
-
Perdew, J. P. (1991) Unified Theory of Exchange and Correlation Beyond the Local Density Approximation, in Electronic Structure of Solids '91 (Ziesche, P. and Eschrig, H., Eds.) pp 11-20, Akademie Verlag, Berlin.
-
(1991)
Electronic Structure of Solids '91
, pp. 11-20
-
-
Perdew, J.P.1
-
41
-
-
11244326290
-
Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters: The mPW and mPW1PW models
-
Adamo, C. and Barone, V. (1998) Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters: The m PW and m PW1PW Models J. Chem. Phys. 108, 664-675 (Pubitemid 128598581)
-
(1998)
Journal of Chemical Physics
, vol.108
, Issue.2
, pp. 664-675
-
-
Adamo, C.1
Barone, V.2
-
42
-
-
84873055189
-
-
Wiley, New York.
-
Hehre, W. J., Radom, L., Schleyer, P. V., and Pople, J. A. (1986) Ab Initio Molecular Orbital Theory, Wiley, New York.
-
(1986)
Ab Initio Molecular Orbital Theory
-
-
Hehre, W.J.1
Radom, L.2
Schleyer, P.V.3
Pople, J.A.4
-
43
-
-
9444274813
-
2 probed using chemically modified flavins bound to glucose oxidase
-
DOI 10.1021/ja047050e
-
2 probed using chemically modified flavins bound to glucose oxidase J. Am. Chem. Soc. 126, 15120-15131 (Pubitemid 39561733)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.46
, pp. 15120-15131
-
-
Roth, J.P.1
Wincek, R.2
Nodet, G.3
Edmondson, D.E.4
McIntire, W.S.5
Klinman, J.P.6
-
45
-
-
84961981091
-
Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics
-
Cramer, C. J. and Truhlar, D. G. (1999) Implicit solvation models: equilibria, structure, spectra, and dynamics Chem. Rev. 99, 2161-2200 (Pubitemid 129585183)
-
(1999)
Chemical Reviews
, vol.99
, Issue.8
, pp. 2161-2200
-
-
Cramer, C.J.1
Truhlar, D.G.2
-
46
-
-
84961980477
-
Quantum mechanical continuum solvation models
-
DOI 10.1021/cr9904009
-
Tomasi, J., Mennucci, B., and Cammi, R. (2005) Quantum Mechanical Continuum Solvation Models Chem. Rev. 105, 2999-3093 (Pubitemid 41222791)
-
(2005)
Chemical Reviews
, vol.105
, Issue.8
, pp. 2999-3093
-
-
Tomasi, J.1
Mennucci, B.2
Cammi, R.3
-
47
-
-
66349120487
-
Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions
-
Marenich, A. V., Cramer, C. J., and Truhlar, D. G. (2009) Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions J. Phys. Chem. B 113, 6378-6396
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 6378-6396
-
-
Marenich, A.V.1
Cramer, C.J.2
Truhlar, D.G.3
-
48
-
-
47249122135
-
A Universal Approach to Solvation Modeling
-
Cramer, C. J. and Truhlar, D. G. (2008) A Universal Approach to Solvation Modeling Acc. Chem. Res. 41, 760-768
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 760-768
-
-
Cramer, C.J.1
Truhlar, D.G.2
-
49
-
-
84962415050
-
Reply to Comment on "a Universal Approach to Solvation Modeling
-
Cramer, C. J. and Truhlar, D. G. (2009) Reply to Comment on "A Universal Approach to Solvation Modeling Acc. Chem. Res. 42, 493-497
-
(2009)
Acc. Chem. Res.
, vol.42
, pp. 493-497
-
-
Cramer, C.J.1
Truhlar, D.G.2
-
50
-
-
33846076119
-
Modeling electrostatic effects in proteins
-
DOI 10.1016/j.bbapap.2006.08.007, PII S1570963906002809
-
Warshel, A., Sharma, P. K., Kato, M., and Parson, W. W. (2006) Modeling electrostatic effects in proteins Biochim. Biophys. Acta, Proteins Proteomics 1764, 1647-1676 (Pubitemid 46070172)
-
(2006)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1764
, Issue.11
, pp. 1647-1676
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Parson, W.W.4
-
51
-
-
36849137629
-
Calculation of equilibrium constants for isotopic exchange reactions
-
Bigeleisen, J. and Mayer, M. G. (1947) Calculation of equilibrium constants for isotopic exchange reactions J. Chem. Phys. 15, 261-267
-
(1947)
J. Chem. Phys.
, vol.15
, pp. 261-267
-
-
Bigeleisen, J.1
Mayer, M.G.2
-
52
-
-
77951003950
-
Oxygen isotope effects as structural and mechanistic probes in inorganic oxidation chemistry
-
Ashley, D. C., Brinkley, D. W., and Roth, J. P. (2010) Oxygen isotope effects as structural and mechanistic probes in inorganic oxidation chemistry Inorg. Chem. 49, 3661-3675
-
(2010)
Inorg. Chem.
, vol.49
, pp. 3661-3675
-
-
Ashley, D.C.1
Brinkley, D.W.2
Roth, J.P.3
-
54
-
-
78650173594
-
On the proper use of the Bigeleisen - Mayer equation and corrections to it in the calculation of isotopic fractionation equilibrium constants
-
Liu, Q., Tossell, J. A., and Liu, Y. (2010) On the proper use of the Bigeleisen-Mayer equation and corrections to it in the calculation of isotopic fractionation equilibrium constants Geochim. Cosmochim. Acta 74, 6965-6983
-
(2010)
Geochim. Cosmochim. Acta
, vol.74
, pp. 6965-6983
-
-
Liu, Q.1
Tossell, J.A.2
Liu, Y.3
-
56
-
-
16244368454
-
1 complex
-
DOI 10.1021/ja043955g
-
Cape, J. L., Bowman, M. K., and Kramer, D. M. (2005) Reaction intermediates of quinol oxidation in a photoactivatable system that mimics electron transfer in the cytochrome bc1 complex J. Am. Chem. Soc. 127, 4208-4215 (Pubitemid 40463045)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.12
, pp. 4208-4215
-
-
Cape, J.L.1
Bowman, M.K.2
Kramer, D.M.3
-
57
-
-
70349089317
-
Theoretical analysis of the unusual temperature dependence of the kinetic isotope effect in quinol oxidation
-
Ludlow, M. K., Soudackov, A. V., and Hammes-Schiffer, S. (2009) Theoretical analysis of the unusual temperature dependence of the kinetic isotope effect in quinol oxidation J. Am. Chem. Soc. 131, 7094-7102
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 7094-7102
-
-
Ludlow, M.K.1
Soudackov, A.V.2
Hammes-Schiffer, S.3
-
58
-
-
29344465714
-
Medicine: Inducible nitric oxide synthase binds, S-nitrosylates, and activates cyclooxygenase-2
-
DOI 10.1126/science.1119407
-
Kim, S. F., Huri, D. A., and Snyder, S. H. (2005) Inducible nitric oxide synthase binds, S-nitrosylates, and activates cyclooxygenase-2 Science 310, 1966-1970 (Pubitemid 43005992)
-
(2005)
Science
, vol.310
, Issue.5756
, pp. 1966-1970
-
-
Kim, S.F.1
Huri, D.A.2
Snyder, S.H.3
-
60
-
-
0004171484
-
-
in (Karlin, K. D. and Tyeklar, Z. Eds.), p, Chapman & Hall, New York.
-
Klinman, J. P., Berry, J. A., and Tian, G. (1993) in Bioinorganic Chemistry of Copper (Karlin, K. D. and Tyeklar, Z., Eds.), p 151, Chapman & Hall, New York.
-
(1993)
Bioinorganic Chemistry of Copper
, pp. 151
-
-
Klinman, J.P.1
Berry, J.A.2
Tian, G.3
-
61
-
-
0034840430
-
Life as aerobes: Are there simple rules for activation of dioxygen by enzymes?
-
DOI 10.1007/s007750000172
-
Klinman, J. P. (2001) Life as aerobes: are there simple rules for activation of dioxygen by enzymes? J. Biol. Inorg. Chem. 6, 1-13 (Pubitemid 32822152)
-
(2001)
Journal of Biological Inorganic Chemistry
, vol.6
, Issue.1
, pp. 1-13
-
-
Klinman, J.P.1
-
62
-
-
41149156920
-
Oxygen-18 isotope effects as a probe of enzymatic activation of molecular oxygen
-
in (Kohen, A. and Limbach, H.-H. Eds.) pp, CRC Press, Boca Raton, FL.
-
Roth, J. P. and Klinman, J. P. (2006) Oxygen-18 isotope effects as a probe of enzymatic activation of molecular oxygen, in Isotope Effects in Chemistry and Biology (Kohen, A. and Limbach, H.-H., Eds.) pp 645-669, CRC Press, Boca Raton, FL.
-
(2006)
Isotope Effects in Chemistry and Biology
, pp. 645-669
-
-
Roth, J.P.1
Klinman, J.P.2
-
63
-
-
14944367495
-
The normal range for secondary Swain-Schaad exponents without tunneling or kinetic complexity
-
DOI 10.1021/ja0430752
-
Hirschi, J. and Singleton, D. A. (2005) The Normal Range for Secondary Swain-Schaad Exponents without Tunneling or Kinetic Complexity J. Am. Chem. Soc. 127, 3294-3295 (Pubitemid 40365265)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.10
, pp. 3294-3295
-
-
Hirschi, J.1
Singleton, D.A.2
-
64
-
-
79851479815
-
Investigating inner-sphere reorganization via secondary kinetic isotope effects in the C-H cleavage reaction catalyzed by soybean lipoxygenase: Tunneling in the substrate backbone as well as the transferred hydrogen
-
references therein
-
Meyer, M. P. and Klinman, J. P. (2011) Investigating inner-sphere reorganization via secondary kinetic isotope effects in the C-H cleavage reaction catalyzed by soybean lipoxygenase: tunneling in the substrate backbone as well as the transferred hydrogen J. Am. Chem. Soc. 133, 430-439 and references therein
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 430-439
-
-
Meyer, M.P.1
Klinman, J.P.2
-
65
-
-
27844441878
-
2- activation reactions
-
DOI 10.1002/anie.200502096
-
2-activation reactions Angew. Chem., Int. Ed. 44, 7273-7276 (Pubitemid 41641749)
-
(2005)
Angewandte Chemie - International Edition
, vol.44
, Issue.44
, pp. 7273-7276
-
-
Lanci, M.P.1
Brinkley, D.W.2
Stone, K.L.3
Smirnov, V.V.4
Roth, J.P.5
-
66
-
-
33845592158
-
2-binding reactions: Characterizing mononuclear superoxide and peroxide structures
-
DOI 10.1021/ja0669326
-
2-Binding Reactions: Characterizing Mononuclear Superoxide and Peroxide Structures J. Am. Chem. Soc. 128, 16006-16007 (Pubitemid 44936572)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.50
, pp. 16006-16007
-
-
Lanci, M.P.1
Roth, J.P.2
-
68
-
-
47749115007
-
Inner-sphere mechanism for molecular oxygen reduction catalyzed by copper amine oxidases
-
DOI 10.1021/ja801378f
-
Mukherjee, A., Smirnov, V. V., Lanci, M. P., Brown, D. E., Shepard, E. M., Dooley, D. M., and Roth, J. P. (2008) Inner-sphere mechanism for molecular oxygen reduction catalyzed by copper amine oxidases J. Am. Chem. Soc. 130, 9459-9473 (Pubitemid 352031157)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.29
, pp. 9459-9473
-
-
Mukherjee, A.1
Smirnov, V.V.2
Lanci, M.P.3
Brown, D.E.4
Shepard, E.M.5
Dooley, D.M.6
Roth, J.P.7
-
69
-
-
67949106377
-
Galactose oxidase as a model for reactivity at a copper superoxide center
-
Humphreys, K. J., Mirica, L. M., Wang, Y., and Klinman, J. P. (2009) Galactose oxidase as a model for reactivity at a copper superoxide center J. Am. Chem. Soc. 131, 4657-4663
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 4657-4663
-
-
Humphreys, K.J.1
Mirica, L.M.2
Wang, Y.3
Klinman, J.P.4
-
70
-
-
0033791318
-
Cyclooxygenases: Structural, cellular, and molecular biology
-
Smith, W. L., DeWitt, D. L., and Garavito, R. M. (2000) Cyclooxygenases: structural, cellular, and molecular biology Annu. Rev. Biochem. 69, 145-182
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 145-182
-
-
Smith, W.L.1
Dewitt, D.L.2
Garavito, R.M.3
-
71
-
-
0035971116
-
Prostaglandin endoperoxide H synthase-1. The functions of cyclooxygenase active site residues in the binding, positioning, and oxygenation of arachidonic acid
-
Thuresson, E. D., Lakkides, K. M., Rieke, C. J., Sun, Y., Wingerd, B. A., Micielli, R., Mulichak, A. M., Malkowski, M. G., Garavito, R. M., and Smith, W. L. (2001) Prostaglandin endoperoxide H synthase-1. The functions of cyclooxygenase active site residues in the binding, positioning, and oxygenation of arachidonic acid J. Biol. Chem. 276, 10347-10358
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10347-10358
-
-
Thuresson, E.D.1
Lakkides, K.M.2
Rieke, C.J.3
Sun, Y.4
Wingerd, B.A.5
Micielli, R.6
Mulichak, A.M.7
Malkowski, M.G.8
Garavito, R.M.9
Smith, W.L.10
-
72
-
-
70249112246
-
Kinetic and Structural Investigations of the Allosteric Site in Human Epithelial 15-Lipoxygenase-2
-
Wecksler, A. T., Kenyon, V., Garcia, N. K., Deschamps, J. D., van der Donk, W. A., and Holman, T. R. (2009) Kinetic and Structural Investigations of the Allosteric Site in Human Epithelial 15-Lipoxygenase-2 Biochemistry 48, 8721-8730
-
(2009)
Biochemistry
, vol.48
, pp. 8721-8730
-
-
Wecksler, A.T.1
Kenyon, V.2
Garcia, N.K.3
Deschamps, J.D.4
Van Der Donk, W.A.5
Holman, T.R.6
-
73
-
-
67650094037
-
Mechanistic Investigations of Human Reticulocyte 15- and Platelet 12-Lipoxygenases with Arachidonic Acid
-
Wecksler, A. T., Jacquot, C., van der Donk, W. A., and Holman, T. R. (2009) Mechanistic Investigations of Human Reticulocyte 15- and Platelet 12-Lipoxygenases with Arachidonic Acid Biochemistry 48, 6259-6267
-
(2009)
Biochemistry
, vol.48
, pp. 6259-6267
-
-
Wecksler, A.T.1
Jacquot, C.2
Van Der Donk, W.A.3
Holman, T.R.4
-
74
-
-
33644868309
-
Molecular dynamics simulations of arachidonic acid-derived pentadienyl radical intermediate complexes with COX-1 and COX-2: Insights into oxygenation regio- and stereoselectivity
-
DOI 10.1021/bi052338h
-
Furse, K. E., Pratt, D. A., Schneider, C., Brash, A. R., Porter, N. A., and Lybrand, T. P. (2006) Molecular Dynamics Simulations of Arachidonic Acid-Derived Pentadienyl Radical Intermediate Complexes with COX-1 and COX-2: Insights into Oxygenation Regio- and Stereoselectivity Biochemistry 45, 3206-3218 (Pubitemid 43376339)
-
(2006)
Biochemistry
, vol.45
, Issue.10
, pp. 3206-3218
-
-
Furse, K.E.1
Pratt, D.A.2
Schneider, C.3
Brash, A.R.4
Porter, N.A.5
Lybrand, T.P.6
-
75
-
-
17344364994
-
18O isotope effects as a probe for dioxygen activation: Application to the soybean lipoxygenase reaction
-
18O isotope effects as a probe for dioxygen activation: Application to the soybean lipoxygenase reaction J. Am. Chem. Soc. 119, 11357-11361
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 11357-11361
-
-
Glickman, M.H.1
Cliff, S.2
Thiemens, M.3
Klinman, J.P.4
-
76
-
-
0141706648
-
Kinetic studies of oxygen reactivity in soybean lipoxygenase-1
-
DOI 10.1021/bi0300884
-
Knapp, M. J. and Klinman, J. P. (2003) Kinetic studies of oxygen reactivity in soybean lipoxygenase-1 Biochemistry 42, 11466-11475 (Pubitemid 37205741)
-
(2003)
Biochemistry
, vol.42
, Issue.39
, pp. 11466-11475
-
-
Knapp, M.J.1
Klinman, J.P.2
-
77
-
-
34047195935
-
Molecular oxygen dependent steps in fatty acid oxidation by cyclooxygenase-1
-
DOI 10.1021/bi602502j
-
Mukherjee, A., Brinkley, D. W., Chang, K.-M., and Roth, J. P. (2007) Molecular oxygen dependent steps in fatty acid oxidation by cyclooxygenase-1 Biochemistry 46, 3975-3989 (Pubitemid 46536061)
-
(2007)
Biochemistry
, vol.46
, Issue.13
, pp. 3975-3989
-
-
Mukherjee, A.1
Brinkley, D.W.2
Chang, K.-M.3
Roth, J.P.4
-
78
-
-
0020492976
-
Use of multiple isotope effects to determine enzyme mechanisms and intrinsic isotope effects. Malic enzyme and glucose 6-phosphate dehydrogenase
-
Hermes, J. D., Roeske, C. A., O'Leary, M. H., and Cleland, W. W. (1982) Use of multiple isotope effects to determine enzyme mechanisms and intrinsic isotope effects. Malic enzyme and glucose 6-phosphate dehydrogenase Biochemistry 21, 5106-5114
-
(1982)
Biochemistry
, vol.21
, pp. 5106-5114
-
-
Hermes, J.D.1
Roeske, C.A.2
O'Leary, M.H.3
Cleland, W.W.4
-
79
-
-
35148871936
-
-
pp, Garland Science, New York.
-
Cook, P. F. and Cleland, W. W. (2007) Enzyme Kinetics and Mechanism, pp 277-280, Garland Science, New York.
-
(2007)
Enzyme Kinetics and Mechanism
, pp. 277-280
-
-
Cook, P.F.1
Cleland, W.W.2
-
80
-
-
27244461847
-
Effective rate constants and general isotope effect equations for steady state enzymic reactions with multiple isotope-sensitive steps
-
Tian, G. (1992) Effective rate constants and general isotope effect equations for steady state enzymic reactions with multiple isotope-sensitive steps Bioorg. Chem. 20, 95-106
-
(1992)
Bioorg. Chem.
, vol.20
, pp. 95-106
-
-
Tian, G.1
-
81
-
-
0027982856
-
Oxygen-18 kinetic isotope effects in the dopamine β-monooxygenase reaction: Evidence for a new chemical mechanism in non-heme metallomonooxygenases
-
Tian, G., Berry, J. A., and Klinman, J. P. (1994) Oxygen-18 kinetic isotope effects in the dopamine β -monooxygenase reaction: Evidence for a new chemical mechanism in non-heme, metallomonooxygenase Biochemistry 33, 226-234 (Pubitemid 24046518)
-
(1994)
Biochemistry
, vol.33
, Issue.1
, pp. 226-234
-
-
Tian, G.1
Berry, J.A.2
Klinman, J.P.3
-
82
-
-
0022418788
-
Use of nitrogen-15 and deuterium isotope effects to determine the chemical mechanism of phenylalanine ammonia-lyase
-
Hermes, J. D., Weiss, P. M., and Cleland, W. W. (1985) Use of nitrogen-15 and deuterium isotope effects to determine the chemical mechanism of phenylalanine ammonia-lyase Biochemistry 24, 2959-2967
-
(1985)
Biochemistry
, vol.24
, pp. 2959-2967
-
-
Hermes, J.D.1
Weiss, P.M.2
Cleland, W.W.3
-
83
-
-
27844574240
-
Determination of a large reorganization energy barrier for hydride abstraction by glucose oxidase
-
DOI 10.1021/ja056025l
-
Brinkley, D. W. and Roth, J. P. (2005) Determination of a Large Reorganization Energy Barrier for Hydride Abstraction by Glucose Oxidase J. Am. Chem. Soc. 127, 15720-15721 (Pubitemid 41643278)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.45
, pp. 15720-15721
-
-
Brinkley, D.W.1
Roth, J.P.2
-
84
-
-
0034647213
-
Intrinsic barriers for electron and hydrogen atom transfer reactions of biomimetic iron complexes
-
DOI 10.1021/ja9941328
-
Roth, J. P., Lovell, S., and Mayer, J. M. (2000) Intrinsic Barriers for Electron and Hydrogen Atom Transfer Reactions of Biomimetic Iron Complexes J. Am. Chem. Soc. 122, 5486-5498 (Pubitemid 30431067)
-
(2000)
Journal of the American Chemical Society
, vol.122
, Issue.23
, pp. 5486-5498
-
-
Roth, J.P.1
Lovell, S.2
Mayer, J.M.3
-
85
-
-
0000423906
-
Oxidation of ferrous and ferrocyanide ions by peroxyl radicals
-
Khaikin, G. I., Alfassi, Z. B., Huie, R. E., and Neta, P. (1996) Oxidation of Ferrous and Ferrocyanide Ions by Peroxyl Radicals J. Phys. Chem. 100, 7072-7077 (Pubitemid 126789921)
-
(1996)
Journal of Physical Chemistry
, vol.100
, Issue.17
, pp. 7072-7077
-
-
Khaikin, G.I.1
Alfassi, Z.B.2
Huie, R.E.3
Neta, P.4
-
86
-
-
33748716572
-
Determination of the acidity constants of some phenol radical cations by means of electron spin resonance
-
Dixon, W. T. and Murphy, D. (1976) Determination of the acidity constants of some phenol radical cations by means of electron spin resonance J. Chem. Soc., Faraday Trans. 272, 1221-1230
-
(1976)
J. Chem. Soc., Faraday Trans.
, vol.272
, pp. 1221-1230
-
-
Dixon, W.T.1
Murphy, D.2
-
87
-
-
34247143185
-
Solvent Effects on the Rates and Mechanisms of Reaction of Phenols with Free Radicals
-
Litwinienko, G. and Ingold, K. U. (2007) Solvent Effects on the Rates and Mechanisms of Reaction of Phenols with Free Radicals Acc. Chem. Res. 40, 222-230
-
(2007)
Acc. Chem. Res.
, vol.40
, pp. 222-230
-
-
Litwinienko, G.1
Ingold, K.U.2
-
89
-
-
78650626762
-
Thermochemistry of proton-coupled electron transfer reagents and its implications
-
Warren, J. J., Tronic, T. A., and Mayer, J. M. (2010) Thermochemistry of proton-coupled electron transfer reagents and its implications Chem. Rev. 110, 6961-7001
-
(2010)
Chem. Rev.
, vol.110
, pp. 6961-7001
-
-
Warren, J.J.1
Tronic, T.A.2
Mayer, J.M.3
-
90
-
-
33746875442
-
MPW1K performs much better than B3LYP in DFT calculations on reactions that proceed by proton-coupled electron transfer (PCET)
-
Lingwood, M., Hammond, J. R., Hrovat, D. A., Mayer, J. M., and Borden, W. T. (2006) MPW1K performs much better than B3LYP in DFT calculations on reactions that proceed by proton-coupled electron transfer (PCET) J. Chem. Theory Comput. 2, 740-745
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 740-745
-
-
Lingwood, M.1
Hammond, J.R.2
Hrovat, D.A.3
Mayer, J.M.4
Borden, W.T.5
-
91
-
-
17744371869
-
Factors controlling the barriers to degenerate hydrogen atom transfers
-
DOI 10.1021/ja050024b
-
Isborn, C., Hrovat, D. A., Borden, W. T., Mayer, J. M., and Carpenter, B. K. (2005) Factors controlling the barriers to degenerate hydrogen atom transfers J. Am. Chem. Soc. 127, 5794-5795 (Pubitemid 40577630)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.16
, pp. 5794-5795
-
-
Isborn, C.1
Hrovat, D.A.2
Borden, W.T.3
Mayer, J.M.4
Carpenter, B.K.5
-
92
-
-
33845926589
-
Calculation of vibronic couplings for phenoxyl/phenol and benzyl/toluene self-exchange reactions: Implications for proton-coupled electron transfer mechanisms
-
DOI 10.1021/ja0656548
-
Skone, J. H., Soudackov, A. V., and Hammes-Schiffer, S. (2006) Calculation of vibronic couplings for phenoxyl/phenol and benzyl/toluene self-exchange reactions: implications for proton-coupled electron transfer mechanisms J. Am. Chem. Soc. 128, 16655-16663 (Pubitemid 46032745)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.51
, pp. 16655-16663
-
-
Skone, J.H.1
Soudackov, A.V.2
Hammes-Schiffer, S.3
-
93
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
DOI 10.1021/cr0503106
-
Warshel, A., Sharma, P. K., Kato, M., Xiang, Y., Liu, H., and Olsson, M. H. M. (2006) Electrostatic basis for enzyme catalysis Chem. Rev. 106, 3210-3235 (Pubitemid 44376933)
-
(2006)
Chemical Reviews
, vol.106
, Issue.8
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
|