-
7
-
-
33751547539
-
-
J. P. Overington, B. Al-Lazikani and A. L. Hopkins, Nat. Rev. Drug Discovery, 2006, 5, 993-996.
-
(2006)
Nat. Rev. Drug Discovery
, vol.5
, pp. 993-996
-
-
Overington, J.P.1
Al-Lazikani, B.2
Hopkins, A.L.3
-
10
-
-
0030960230
-
-
T. J. Marrone, J. M. Briggs and J. A. McCammon, Annu. Rev. Pharmacol., 1997, 37, 71-90.
-
(1997)
Annu. Rev. Pharmacol.
, vol.37
, pp. 71-90
-
-
Marrone, T.J.1
Briggs, J.M.2
McCammon, J.A.3
-
11
-
-
72849148589
-
-
S. Costanzi, I. G. Tikhonova, T. K. Harden and K. A. Jacobson, J. Comput.-Aided Mol. Des., 2009, 23, 747-754.
-
(2009)
J. Comput.-Aided Mol. Des.
, vol.23
, pp. 747-754
-
-
Costanzi, S.1
Tikhonova, I.G.2
Harden, T.K.3
Jacobson, K.A.4
-
15
-
-
70350340728
-
-
D. D. Boehr, R. Nussinov and P. E. Wright, Nat. Chem. Biol., 2009, 5, 789-796.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
16
-
-
0033970020
-
-
S. Kumar, B. Ma, C. J. Tsai, N. Sinha and R. Nussinov, Protein Sci., 2000, 9, 10-19.
-
(2000)
Protein Sci.
, vol.9
, pp. 10-19
-
-
Kumar, S.1
Ma, B.2
Tsai, C.J.3
Sinha, N.4
Nussinov, R.5
-
17
-
-
0032824805
-
-
B. Ma, S. Kumar, C. J. Tsai and R. Nussinov, Protein Eng., Des. Sel., 1999, 12, 713-720.
-
(1999)
Protein Eng., Des. Sel.
, vol.12
, pp. 713-720
-
-
Ma, B.1
Kumar, S.2
Tsai, C.J.3
Nussinov, R.4
-
18
-
-
0033056708
-
-
C. J. Tsai, S. Kumar, B. Ma and R. Nussinov, Protein Sci., 1999, 8, 1181-1190.
-
(1999)
Protein Sci.
, vol.8
, pp. 1181-1190
-
-
Tsai, C.J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
19
-
-
0033621104
-
-
C. J. Tsai, B. Ma and R. Nussinov, Proc. Natl. Acad. Sci. U. S. A., 1999, 96, 9970-9972.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9970-9972
-
-
Tsai, C.J.1
Ma, B.2
Nussinov, R.3
-
23
-
-
12244291911
-
-
S. Ekins, B. Boulanger, P. W. Swaan and M. A. Z. Hupcey, Mol. Diversity, 2002, 5, 255-275.
-
(2002)
Mol. Diversity
, vol.5
, pp. 255-275
-
-
Ekins, S.1
Boulanger, B.2
Swaan, P.W.3
Hupcey, M.A.Z.4
-
24
-
-
35648980041
-
-
S. Ekins, G. F. Ecker, P. Chiba and P. W. Swaan, Xenobiotica; the Fate of Foreign Compounds in Biological Systems, 2007, 37, 1152-1170.
-
(2007)
Xenobiotica; the Fate of Foreign Compounds in Biological Systems
, vol.37
, pp. 1152-1170
-
-
Ekins, S.1
Ecker, G.F.2
Chiba, P.3
Swaan, P.W.4
-
27
-
-
70450181710
-
-
T. Scior, J. L. Medina-Franco, Q. T. Do, K. Martínez-Mayorga, J. A. Yunes Rojas and P. Bernard, Curr. Med. Chem., 2009, 16, 4297-4313.
-
(2009)
Curr. Med. Chem.
, vol.16
, pp. 4297-4313
-
-
Scior, T.1
Medina-Franco, J.L.2
Do, Q.T.3
Martínez-Mayorga, K.4
Yunes Rojas, J.A.5
Bernard, P.6
-
28
-
-
64349088801
-
-
Elsevier, Oxford
-
Y. C. Martin, B. T. John and J. T. David, in Comprehensive Medicinal Chemistry II, Elsevier, Oxford, 2007, pp. 119-147.
-
(2007)
Comprehensive Medicinal Chemistry II
, pp. 119-147
-
-
Martin, Y.C.1
John, B.T.2
David, J.T.3
-
31
-
-
77249106566
-
-
A. R. Leach, V. J. Gillet, R. A. Lewis and R. Taylor, J. Med. Chem., 2010, 53, 539-558.
-
(2010)
J. Med. Chem.
, vol.53
, pp. 539-558
-
-
Leach, A.R.1
Gillet, V.J.2
Lewis, R.A.3
Taylor, R.4
-
32
-
-
37649009919
-
-
G. Wolber, T. Seidel, F. Bendix and T. Langer, Drug Discovery Today, 2008, 13, 23-29.
-
(2008)
Drug Discovery Today
, vol.13
, pp. 23-29
-
-
Wolber, G.1
Seidel, T.2
Bendix, F.3
Langer, T.4
-
37
-
-
64349088801
-
-
Elsevier, Oxford
-
A. R. Leach, B. T. John and J. T. David, in Comprehensive Medicinal Chemistry II, Elsevier, Oxford, 2007, pp. 87-118.
-
(2007)
Comprehensive Medicinal Chemistry II
, pp. 87-118
-
-
Leach, A.R.1
John, B.T.2
David, J.T.3
-
40
-
-
36749036846
-
-
C. W. Yap, H. Li, Z. L. Ji and Y. Z. Chen, Mini-Rev. Med. Chem., 2007, 7, 1097-1107.
-
(2007)
Mini-Rev. Med. Chem.
, vol.7
, pp. 1097-1107
-
-
Yap, C.W.1
Li, H.2
Ji, Z.L.3
Chen, Y.Z.4
-
41
-
-
5644236834
-
-
O. Güner, O. Clement and Y. Kurogi, Current Medicinal Chemistry, 2004, 11, 2991-3005.
-
(2004)
Current Medicinal Chemistry
, vol.11
, pp. 2991-3005
-
-
Güner, O.1
Clement, O.2
Kurogi, Y.3
-
44
-
-
0343869724
-
-
S. Ash, M. A. Cline, R. W. Homer, T. Hurst and G. B. Smith, J. Chem. Inf. Comp. Sci., 1997, 37, 71-79.
-
(1997)
J. Chem. Inf. Comp. Sci.
, vol.37
, pp. 71-79
-
-
Ash, S.1
Cline, M.A.2
Homer, R.W.3
Hurst, T.4
Smith, G.B.5
-
45
-
-
0036827075
-
-
J. L. Durant, B. A. Leland, D. R. Henry and J. G. Nourse, J. Chem. Inf. Comp. Sci., 2002, 42, 1273-1280.
-
(2002)
J. Chem. Inf. Comp. Sci.
, vol.42
, pp. 1273-1280
-
-
Durant, J.L.1
Leland, B.A.2
Henry, D.R.3
Nourse, J.G.4
-
48
-
-
59149086030
-
-
A. M. Helguera, R. D. Combes, M. P. González and M. N. D. S. Cordeiro, Curr. Top. Med. Chem., 2008, 8, 1628-1655.
-
(2008)
Curr. Top. Med. Chem.
, vol.8
, pp. 1628-1655
-
-
Helguera, A.M.1
Combes, R.D.2
González, M.P.3
Cordeiro, M.N.D.S.4
-
49
-
-
0035289779
-
-
C. A. Lipinski, F. Lombardo, B. W. Dominy and P. J. Feeney, Adv. Drug Delivery Rev., 2001, 46, 3-26.
-
(2001)
Adv. Drug Delivery Rev.
, vol.46
, pp. 3-26
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
50
-
-
59149094217
-
-
M. P. González, C. Terán, L. Saíz-Urra and M. Teijeira, Curr. Top. Med. Chem., 2008, 8, 1606-1627.
-
(2008)
Curr. Top. Med. Chem.
, vol.8
, pp. 1606-1627
-
-
González, M.P.1
Terán, C.2
Saíz-Urra, L.3
Teijeira, M.4
-
53
-
-
43849096919
-
-
A. G. Mercader, P. R. Duchowicz, F. M. Fernández and E. A. Castro, Chemom. Intell. Lab. Syst., 2008, 92, 138-144.
-
(2008)
Chemom. Intell. Lab. Syst.
, vol.92
, pp. 138-144
-
-
Mercader, A.G.1
Duchowicz, P.R.2
Fernández, F.M.3
Castro, E.A.4
-
55
-
-
0038393246
-
-
M. Pintore, H. van de Waterbeemd, N. Piclin and J. R. Chrétien, Eur. J. Med. Chem., 2003, 38, 427-431.
-
(2003)
Eur. J. Med. Chem.
, vol.38
, pp. 427-431
-
-
Pintore, M.1
Van De Waterbeemd, H.2
Piclin, N.3
Chrétien, J.R.4
-
56
-
-
35248832636
-
-
O. Obrezanova, G. Csányi, J. M. R. Gola and M. D. Segall, J. Chem. Inf. Model., 2007, 47, 1847-1857.
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1847-1857
-
-
Obrezanova, O.1
Csányi, G.2
Gola, J.M.R.3
Segall, M.D.4
-
61
-
-
0001681052
-
-
S. Wold, A. Ruhe, H. Wold and W. J. Dunn III, SIAM J. Sci. Stat. Comput., 1984, 5, 735-743.
-
(1984)
SIAM J. Sci. Stat. Comput.
, vol.5
, pp. 735-743
-
-
Wold, S.1
Ruhe, A.2
Wold, H.3
Dunn III, W.J.4
-
63
-
-
45949123735
-
-
S. Wold, K. Esbensen and P. Geladi, Chemom. Intell. Lab. Syst., 1987, 2, 37-52.
-
(1987)
Chemom. Intell. Lab. Syst.
, vol.2
, pp. 37-52
-
-
Wold, S.1
Esbensen, K.2
Geladi, P.3
-
66
-
-
33646861609
-
-
H. Z. Si, T. Wang, K. J. Zhang, Z. D. Hu and B. T. Fan, Bioorg. Med. Chem., 2006, 14, 4834-4841.
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 4834-4841
-
-
Si, H.Z.1
Wang, T.2
Zhang, K.J.3
Hu, Z.D.4
Fan, B.T.5
-
68
-
-
66249130083
-
-
A. J. Kulkarni, V. K. Jayaraman and B. D. Kulkarni, Comb. Chem. High Throughput Screening, 2009, 12, 440-450.
-
(2009)
Comb. Chem. High Throughput Screening
, vol.12
, pp. 440-450
-
-
Kulkarni, A.J.1
Jayaraman, V.K.2
Kulkarni, B.D.3
-
70
-
-
33644526245
-
-
J. Cartmell, S. Enoch, D. Krstajic and D. E. Leahy, J. Comput.-Aided Mol. Des., 2005, 19, 821-833.
-
(2005)
J. Comput.-Aided Mol. Des.
, vol.19
, pp. 821-833
-
-
Cartmell, J.1
Enoch, S.2
Krstajic, D.3
Leahy, D.E.4
-
73
-
-
62549152808
-
-
R. Kohavi, in IJCAI, 1995, pp. 1137-1145.
-
(1995)
IJCAI
, pp. 1137-1145
-
-
Kohavi, R.1
-
77
-
-
0023751431
-
-
R. D. Cramer, D. E. Patterson and J. D. Bunce, J. Am. Chem. Soc., 1988, 110, 5959-5967.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
78
-
-
0027944195
-
-
G. Klebe, U. Abraham and T. Mietzner, J. Med. Chem., 1994, 37, 4130-4146.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 4130-4146
-
-
Klebe, G.1
Abraham, U.2
Mietzner, T.3
-
79
-
-
77952848684
-
-
C. H. Andrade, K. F. M. Pasqualoto, E. I. Ferreira and A. J. Hopfinger, Molecules (Basel, Switzerland), 15, pp. 3281-3294.
-
Molecules (Basel, Switzerland)
, vol.15
, pp. 3281-3294
-
-
Andrade, C.H.1
Pasqualoto, K.F.M.2
Ferreira, E.I.3
Hopfinger, A.J.4
-
83
-
-
20144371130
-
-
A. Vedani, M. Dobler and M. A. Lill, J. Med. Chem., 2005, 48, 3700-3703.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 3700-3703
-
-
Vedani, A.1
Dobler, M.2
Lill, M.A.3
-
84
-
-
0033800498
-
-
G. Cruciani, M. Pastor and W. Guba, Eur. J. Pharm. Sci., 2000, 11 (Suppl. 2), S29-39-S29-39.
-
(2000)
Eur. J. Pharm. Sci.
, vol.11
, Issue.SUPPL. 2
-
-
Cruciani, G.1
Pastor, M.2
Guba, W.3
-
85
-
-
0034710718
-
-
M. Pastor, G. Cruciani, I. McLay, S. Pickett and S. Clementi, J. Med. Chem., 2000, 43, 3233-3243.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 3233-3243
-
-
Pastor, M.1
Cruciani, G.2
McLay, I.3
Pickett, S.4
Clementi, S.5
-
86
-
-
79959552290
-
-
C.-G. Wermuth, C. R. Ganellin, P. Lindberg, L. A. Mitscher and A. B. James, Academic Press, 1998, pp. 385-395
-
C.-G. Wermuth, C. R. Ganellin, P. Lindberg, L. A. Mitscher and A. B. James, Academic Press, 1998, pp. 385-395.
-
-
-
-
89
-
-
0029444383
-
-
G. Jones, P. Willett and R. C. Glen, J. Comput.-Aided Mol. Des., 1995, 9, 532-549.
-
(1995)
J. Comput.-Aided Mol. Des.
, vol.9
, pp. 532-549
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
-
90
-
-
0032488013
-
-
C. Lemmen, T. Lengauer and G. Klebe, J. Med. Chem., 1998, 41, 4502-4520.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 4502-4520
-
-
Lemmen, C.1
Lengauer, T.2
Klebe, G.3
-
91
-
-
33846013232
-
-
G. Schneider, P. Schneider and S. Renner, QSAR Comb. Sci., 2006, 25, 1162-1171.
-
(2006)
QSAR Comb. Sci.
, vol.25
, pp. 1162-1171
-
-
Schneider, G.1
Schneider, P.2
Renner, S.3
-
92
-
-
79959536989
-
-
Chemical Computing Group, http://www.chemcomp.com.
-
-
-
-
93
-
-
79959543501
-
-
Acclerys, http://accelrys.com.
-
-
-
-
94
-
-
79959546584
-
-
PubChem, http://pubchem.ncbi.nlm.nih.gov/.
-
PubChem
-
-
-
96
-
-
79959566549
-
-
ChEMBL, http://www.ebi.ac.uk/chembldb.
-
ChEMBL
-
-
-
97
-
-
34548289911
-
-
B. O. Villoutreix, N. Renault, D. Lagorce, O. Sperandio,M.Montes and M. A. Miteva, Curr. Protein Pept. Sci., 2007, 8, 381-411.
-
(2007)
Curr. Protein Pept. Sci.
, vol.8
, pp. 381-411
-
-
Villoutreix, B.O.1
Renault, N.2
Lagorce, D.3
Sperandio, O.4
Montes, M.5
Miteva, M.A.6
-
99
-
-
77950486830
-
-
L. C. Cerchietti, A. F. Ghetu, X. Zhu, G. F. Da Silva, S. Zhong, M. Matthews, K. L. Bunting, J. M. Polo, C. Farès, C. H. Arrowsmith, S. N. Yang, M. Garcia, A. Coop, A. D. MacKerell, Jr., G. G. Privé and A. Melnick, Cancer Cell, 17, pp. 400-411.
-
Cancer Cell
, vol.17
, pp. 400-411
-
-
Cerchietti, L.C.1
Ghetu, A.F.2
Zhu, X.3
Da Silva, G.F.4
Zhong, S.5
Matthews, M.6
Bunting, K.L.7
Polo, J.M.8
Farès, C.9
Arrowsmith, C.H.10
Yang, S.N.11
Garcia, M.12
Coop, A.13
MacKerell Jr., A.D.14
Privé, G.G.15
Melnick, A.16
-
100
-
-
0037068532
-
-
Y. C. Martin, J. L. Kofron and L. M. Traphagen, J. Med. Chem., 2002, 45, 4350-4358.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 4350-4358
-
-
Martin, Y.C.1
Kofron, J.L.2
Traphagen, L.M.3
-
102
-
-
33750994920
-
-
J. H. Nettles, J. L. Jenkins, A. Bender, Z. Deng, J. W. Davies and M. Glick, J. Med. Chem., 2006, 49, 6802-6810.
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6802-6810
-
-
Nettles, J.H.1
Jenkins, J.L.2
Bender, A.3
Deng, Z.4
Davies, J.W.5
Glick, M.6
-
104
-
-
34250839505
-
-
D. K. Agrafiotis, A. C. Gibbs, F. Zhu, S. Izrailev and E. Martin, J. Chem. Inf. Model., 2007, 47, 1067-1086.
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1067-1086
-
-
Agrafiotis, D.K.1
Gibbs, A.C.2
Zhu, F.3
Izrailev, S.4
Martin, E.5
-
106
-
-
0029025224
-
-
M. C. Nicklaus, S. Wang, J. S. Driscoll and G. W. Milne, Bioorg. Med. Chem., 1995, 3, 411-428.
-
(1995)
Bioorg. Med. Chem.
, vol.3
, pp. 411-428
-
-
Nicklaus, M.C.1
Wang, S.2
Driscoll, J.S.3
Milne, G.W.4
-
107
-
-
33746626424
-
-
S. Günther, C. Senger, E. Michalsky, A. Goede and R. Preissner, BMC Bioinformatics, 2006, 7, 293-293.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 293-293
-
-
Günther, S.1
Senger, C.2
Michalsky, E.3
Goede, A.4
Preissner, R.5
-
108
-
-
18344382014
-
-
J. Kirchmair, C. Laggner, G. Wolber and T. Langer, J. Chem. Inf. Model., 2005, 45, 422-430.
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 422-430
-
-
Kirchmair, J.1
Laggner, C.2
Wolber, G.3
Langer, T.4
-
109
-
-
33746921247
-
-
J. Kirchmair, G. Wolber, C. Laggner and T. Langer, J. Chem. Inf. Model., 2006, 46, 1848-1861.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1848-1861
-
-
Kirchmair, J.1
Wolber, G.2
Laggner, C.3
Langer, T.4
-
110
-
-
33846598772
-
-
M. J. Loferer, I. Kolossváry and A. Aszódi, J. Mol. Graphics Modell., 2007, 25, 700-710.
-
(2007)
J. Mol. Graphics Modell.
, vol.25
, pp. 700-710
-
-
Loferer, M.J.1
Kolossváry, I.2
Aszódi, A.3
-
111
-
-
0028195186
-
-
T. E. Moock, D. R. Henry, A. G. Ozkabak and M. Alamgir, J. Chem. Inf. Comp. Sci., 1994, 34, 184-189.
-
(1994)
J. Chem. Inf. Comp. Sci.
, vol.34
, pp. 184-189
-
-
Moock, T.E.1
Henry, D.R.2
Ozkabak, A.G.3
Alamgir, M.4
-
112
-
-
0037433589
-
-
D. Bernard, A. Coop and A. D. MacKerell, Jr., J. Am. Chem. Soc., 2003, 125, 3101-3107.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 3101-3107
-
-
Bernard, D.1
Coop, A.2
MacKerell Jr., A.D.3
-
113
-
-
34247189120
-
-
D. Bernard, A. Coop and A. D. MacKerell, Jr., J. Med. Chem., 2007, 50, 1799-1809.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 1799-1809
-
-
Bernard, D.1
Coop, A.2
MacKerell Jr., A.D.3
-
114
-
-
28144465246
-
-
D. Bernard, A. Coop and A. D. MacKerell, Jr., J. Med. Chem., 2005, 48, 7773-7780.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 7773-7780
-
-
Bernard, D.1
Coop, A.2
MacKerell Jr., A.D.3
-
115
-
-
0041540453
-
-
D. D. Beusen, E. F. Berkley Shands, S. F. Karasek, G. R. Marshall and R. A. Dammkoehler, THEOCHEM, 1996, 370, 157-171.
-
(1996)
THEOCHEM
, vol.370
, pp. 157-171
-
-
Beusen, D.D.1
Berkley Shands, E.F.2
Karasek, S.F.3
Marshall, G.R.4
Dammkoehler, R.A.5
-
117
-
-
79959558837
-
-
American Chemical Society
-
Garland R. Marshall, C. D. Barry, Heinz E. Bosshard, Richard A. Dammkoehlerand Deborah A. Dunn, in Computer-Assisted Drug Design, American Chemical Society, 1979, pp. 205-226.
-
(1979)
Computer-Assisted Drug Design
, pp. 205-226
-
-
Marshall, G.R.1
Barry, C.D.2
Bosshard, H.E.3
Dammkoehler, R.A.4
Dunn, D.A.5
-
119
-
-
5744249209
-
-
N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller and E. Teller, J. Chem. Phys., 1953, 21, 1087-1087.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1087
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
121
-
-
84986522856
-
-
A. Smellie, S. L. Teig and P. Towbin, J. Comput. Chem., 1995, 16, 171-187.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 171-187
-
-
Smellie, A.1
Teig, S.L.2
Towbin, P.3
-
129
-
-
2142813682
-
-
W. F. van Gunsteren and H. J. C. Berendsen, Angew. Chem., Int. Ed. Engl., 1990, 29, 992-1023.
-
(1990)
Angew. Chem., Int. Ed. Engl.
, Issue.29
, pp. 992-1023
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
136
-
-
26444479778
-
-
S. Kirkpatrick, C. D. Gelatt and M. P. Vecchi, Science, 1983, 220, 671-680.
-
(1983)
Science
, vol.220
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt, C.D.2
Vecchi, M.P.3
-
138
-
-
0034864528
-
-
A. Mitsutake, Y. Sugita and Y. Okamoto, Biopolymers, 2001, 60, 96-123.
-
(2001)
Biopolymers
, vol.60
, pp. 96-123
-
-
Mitsutake, A.1
Sugita, Y.2
Okamoto, Y.3
-
143
-
-
3142716857
-
-
D. Hamelberg, J. Mongan and J. A. McCammon, J. Chem. Phys., 2004, 120, 11919-11929.
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 11919-11929
-
-
Hamelberg, D.1
Mongan, J.2
McCammon, J.A.3
-
145
-
-
84986468475
-
-
J. Hermans, R. H. Yun and A. G. Anderson, J. Comput. Chem., 1992, 13, 429-442.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 429-442
-
-
Hermans, J.1
Yun, R.H.2
Anderson, A.G.3
-
146
-
-
84986519238
-
-
S. Kumar, J. M. Rosenberg, D. Bouzida, R. H. Swendsen and P. A. Kollman, J. Comput. Chem., 1992, 13, 1011-1021.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
147
-
-
33750035856
-
-
A. Okur, L. Wickstrom, M. Layten, R. Geney, K. Song, V. Hornak and C. Simmerling, J. Chem. Theory Comput., 2006, 2, 420-433.
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 420-433
-
-
Okur, A.1
Wickstrom, L.2
Layten, M.3
Geney, R.4
Song, K.5
Hornak, V.6
Simmerling, C.7
-
148
-
-
38349093284
-
-
D. Sindhikara, Y. Meng and A. E. Roitberg, J. Chem. Phys., 2008, 128, 024103-024103.
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 24103-24103
-
-
Sindhikara, D.1
Meng, Y.2
Roitberg, A.E.3
-
149
-
-
0037157317
-
-
H. Fukunishi, O. Watanabe and S. Takada, J. Chem. Phys., 2002, 116, 9058-9067.
-
(2002)
J. Chem. Phys.
, vol.116
, pp. 9058-9067
-
-
Fukunishi, H.1
Watanabe, O.2
Takada, S.3
-
150
-
-
0034294024
-
-
Y. Sugita, A. Kitao and Y. Okamoto, J. Chem. Phys., 2000, 113, 6051, 6042-6051, 6042.
-
(2000)
J. Chem. Phys.
, vol.113
-
-
Sugita, Y.1
Kitao, A.2
Okamoto, Y.3
-
151
-
-
79959565549
-
-
Y. Sugita and Y. Okamoto, cond-mat/0009119, 2000
-
Y. Sugita and Y. Okamoto, cond-mat/0009119, 2000.
-
-
-
-
154
-
-
58149512801
-
-
L. Zheng, M. Chen and W. Yang, Proc. Natl. Acad. Sci. U. S. A., 2008, 105, 20227-20232.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 20227-20232
-
-
Zheng, L.1
Chen, M.2
Yang, W.3
-
155
-
-
67649114369
-
-
L. Zheng, M. Chen and W. Yang, J. Chem. Phys., 2009, 130, 234105-234105.
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 234105-234105
-
-
Zheng, L.1
Chen, M.2
Yang, W.3
-
156
-
-
0036467163
-
-
K. Y. Sanbonmatsu and A. E. García, Proteins: Struct., Funct., Genet., 2002, 46, 225-234.
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.46
, pp. 225-234
-
-
Sanbonmatsu, K.Y.1
García, A.E.2
-
158
-
-
67349278539
-
-
P. M. González, C. Acharya, A. D. MacKerell, Jr. and J. E. Polli, Pharm. Res., 2009, 26, 1665-1678.
-
(2009)
Pharm. Res.
, vol.26
, pp. 1665-1678
-
-
González, P.M.1
Acharya, C.2
MacKerell Jr., A.D.3
Polli, J.E.4
-
159
-
-
77952837412
-
-
S. Lee, M. Chen, W. Yang and N. G. J. Richards, J. Am. Chem. Soc., 132, pp. 7252-7253.
-
J. Am. Chem. Soc.
, vol.132
, pp. 7252-7253
-
-
Lee, S.1
Chen, M.2
Yang, W.3
Richards, N.G.J.4
-
160
-
-
70350230389
-
-
D. Provasi, A. Bortolato and M. Filizola, Biochemistry, 2009, 48, 10020-10029.
-
(2009)
Biochemistry
, vol.48
, pp. 10020-10029
-
-
Provasi, D.1
Bortolato, A.2
Filizola, M.3
-
162
-
-
1842479952
-
-
A. Onufriev, D. Bashford and D. A. Case, Proteins: Struct., Funct., Bioinf., 2004, 55, 383-394.
-
(2004)
Proteins: Struct., Funct., Bioinf.
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
166
-
-
0344778061
-
-
C. Still, A. Tempczyk, R. Hawley and T. Hendrickson, J. Am. Chem. Soc., 1990, 112, 6127-6129.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127-6129
-
-
Still, C.1
Tempczyk, A.2
Hawley, R.3
Hendrickson, T.4
-
167
-
-
0038792211
-
-
M. S. Lee, M. Feig, F. R. Salsbury and C. L. Brooks, J. Comput. Chem., 2003, 24, 1348-1356.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1348-1356
-
-
Lee, M.S.1
Feig, M.2
Salsbury, F.R.3
Brooks, C.L.4
-
168
-
-
0141956090
-
-
W. Im, M. S. Lee and C. L. Brooks, J. Comput. Chem., 2003, 24, 1691-1702.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1691-1702
-
-
Im, W.1
Lee, M.S.2
Brooks, C.L.3
-
169
-
-
67650500988
-
-
B. R. Brooks, C. L. Brooks, A. D. MacKerell, Jr., L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York and M. Karplus, J. Comput. Chem., 2009, 30, 1545-1614.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks, C.L.2
MacKerell Jr., A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
170
-
-
0242714259
-
-
John Wiley & Sons: Chichester
-
A. D. MacKerell, Jr., B. Brooks, C. L. I. Brooks, L. Nilsson, B. Roux, Y. Won and M. Karplus, CHARMM: The Energy Function and Its Parameterization with an Overview of the Program, John Wiley & Sons: Chichester, 1998.
-
(1998)
CHARMM: The Energy Function and Its Parameterization with An Overview of the Program
-
-
MacKerell Jr., A.D.1
Brooks, B.2
Brooks, C.L.I.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
-
171
-
-
23444454552
-
-
D. A. Case, T. E. Cheatham, T. Darden, H. Gohlke, R. Luo, K. M. Merz, A. Onufriev, C. Simmerling, B. Wang and R. J. Woods, J. Comput. Chem., 2005, 26, 1668-1688.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
172
-
-
0029011701
-
-
W. D. Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell and P. A. Kollman, J. Am. Chem. Soc., 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
173
-
-
3142714765
-
-
A. D. MacKerell, Jr., M. Feig and C. L. Brooks, J. Comput. Chem., 2004, 25, 1400-1415.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
MacKerell Jr., A.D.1
Feig, M.2
Brooks, C.L.3
-
175
-
-
79959567547
-
-
LAMMPS, http://lammps.sandia.gov.
-
LAMMPS
-
-
-
176
-
-
46249092554
-
-
B. Hess, C. Kutzner, D. van der Spoel and E. Lindahl, J. Chem. Theory Comput., 2008, 4, 435-447.
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
177
-
-
0029912748
-
-
W. L. Jorgensen, D. S. Maxwell and J. Tirado-Rives, J. Am. Chem. Soc., 1996, 118, 11225-11236.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
178
-
-
0035913529
-
-
G. A. Kaminski, R. A. Friesner, J. Tirado-Rives and W. L. Jorgensen, J. Phys. Chem. B, 2001, 105, 6474-6487.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
179
-
-
76249087938
-
-
K. Vanommeslaeghe, E. Hatcher, C. Acharya, S. Kundu, S. Zhong, J. Shim, E. Darian, O. Guvench, P. Lopes, I. Vorobyov and A. D. MacKerell, Jr., J. Comput. Chem., 2009, 31, 671-690.
-
(2009)
J. Comput. Chem.
, vol.31
, pp. 671-690
-
-
Vanommeslaeghe, K.1
Hatcher, E.2
Acharya, C.3
Kundu, S.4
Zhong, S.5
Shim, J.6
Darian, E.7
Guvench, O.8
Lopes, P.9
Vorobyov, I.10
MacKerell Jr., A.D.11
-
181
-
-
2942532422
-
-
J. Wang, R. M. Wolf, J. W. Caldwell, P. A. Kollman and D. A. Case, J. Comput. Chem., 2004, 25, 1157-1174.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
183
-
-
33748538349
-
-
J. Wang, W. Wang, P. A. Kollman and D. A. Case, J. Mol. Graphics Modell., 2006, 25, 247-260.
-
(2006)
J. Mol. Graphics Modell.
, vol.25
, pp. 247-260
-
-
Wang, J.1
Wang, W.2
Kollman, P.A.3
Case, D.A.4
-
186
-
-
33644787399
-
-
S. Lifson, A. T. Hagler and P. Dauber, J. Am. Chem. Soc., 1979, 101, 5111-5121.
-
(1979)
J. Am. Chem. Soc.
, vol.101
, pp. 5111-5121
-
-
Lifson, S.1
Hagler, A.T.2
Dauber, P.3
-
188
-
-
0024821263
-
-
N. L. Allinger, Y. H. Yuh and J. H. Lii, J. Am. Chem. Soc., 1989, 111, 8551-8566.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 8551-8566
-
-
Allinger, N.L.1
Yuh, Y.H.2
Lii, J.H.3
-
189
-
-
5244324671
-
-
N. Nevins, J.-H. Lii and N. L. Allinger, J. Comput. Chem., 1996, 17, 695-729.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 695-729
-
-
Nevins, N.1
Lii, J.-H.2
Allinger, N.L.3
-
190
-
-
84988115618
-
-
M. Clark, R. D. Cramer and N. Van Opdenbosch, J. Comput. Chem., 1989, 10, 982-1012.
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 982-1012
-
-
Clark, M.1
Cramer, R.D.2
Van Opdenbosch, N.3
-
191
-
-
79959537903
-
-
M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery, Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara
-
M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery, Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B. Johnson, W. Chen, M. W. Wong, C. Gonzalez, and J. A. Pople, Gaussian, Inc., Wallingford CT, 2004.
-
-
-
-
192
-
-
77953752095
-
-
R. Rais, C. Acharya, G. Tririya, A. D. MacKerell, Jr. and J. E. Polli, J. Med. Chem., 2010, 53, 4749-4760.
-
(2010)
J. Med. Chem.
, vol.53
, pp. 4749-4760
-
-
Rais, R.1
Acharya, C.2
Tririya, G.3
MacKerell Jr., A.D.4
Polli, J.E.5
-
193
-
-
78649971657
-
-
R. Rais, C. Acharya, A. D. MacKerell, Jr. and J. E. Polli, Mol. Pharmaceutics, 2010, 7, 2240-2254.
-
(2010)
Mol. Pharmaceutics
, vol.7
, pp. 2240-2254
-
-
Rais, R.1
Acharya, C.2
MacKerell Jr., A.D.3
Polli, J.E.4
|