-
1
-
-
33745123321
-
Molecular descriptors and methods for ligand based virtual high throughput screening in drug discovery
-
Pozzan A. Molecular descriptors and methods for ligand based virtual high throughput screening in drug discovery. Curr. Pharm. Des. 12 17 (2006) 2099-2110
-
(2006)
Curr. Pharm. Des.
, vol.12
, Issue.17
, pp. 2099-2110
-
-
Pozzan, A.1
-
2
-
-
0038748179
-
Virtual screening of virtual libraries
-
Green D.V. Virtual screening of virtual libraries. Prog. Med. Chem. 41 (2003) 61-97
-
(2003)
Prog. Med. Chem.
, vol.41
, pp. 61-97
-
-
Green, D.V.1
-
3
-
-
38549159100
-
-
PriceWaterhouseCoopers, PriceWaterhouseCoopers Pharma 2005: An Industrial Revolution in R&D. http://www.pwc.com/gx/eng/about/ind/pharma/industrial_revolution.pdf, 2005.
-
-
-
-
4
-
-
38549122997
-
-
J.F. Contrera, Application of toxicology databases in drug development (estimating potential toxicity). http://www.lib.uchicago.edu/cinf/220nm/slides/220nm18/220nm18.ppt#285,24 ,Slide, 2004.
-
-
-
-
6
-
-
0037364162
-
ADMET in silico modelling: towards prediction paradise?
-
Van de Waterbeemd H., and Gifford E. ADMET in silico modelling: towards prediction paradise?. Nat. Rev. Drug Discov. 2 3 (2003) 192-204
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, Issue.3
, pp. 192-204
-
-
Van de Waterbeemd, H.1
Gifford, E.2
-
7
-
-
33747812085
-
Applying computational modeling to drug discovery and development
-
Kumar N., Hendriks B.S., Janes K.A., De Graaf D., and Lauffenburger D.A. Applying computational modeling to drug discovery and development. Drug Discov. Today 11 17-18 (2006) 806-811
-
(2006)
Drug Discov. Today
, vol.11
, Issue.17-18
, pp. 806-811
-
-
Kumar, N.1
Hendriks, B.S.2
Janes, K.A.3
De Graaf, D.4
Lauffenburger, D.A.5
-
8
-
-
2942564021
-
Pursuing the lead likeness concept in pharmaceutical research
-
Hann M.M., and Oprea T.I. Pursuing the lead likeness concept in pharmaceutical research. Curr. Opin. Chem. Biol. 8 3 (2004) 255-263
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, Issue.3
, pp. 255-263
-
-
Hann, M.M.1
Oprea, T.I.2
-
9
-
-
3242888975
-
Integrating virtual screening in lead discovery
-
Oprea T.I., and Matter H. Integrating virtual screening in lead discovery. Curr. Opin. Chem. Biol. 8 4 (2004) 349-358
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, Issue.4
, pp. 349-358
-
-
Oprea, T.I.1
Matter, H.2
-
10
-
-
21644465837
-
Computational chemistry as an integral component of lead generation
-
Roche O., and Guba W. Computational chemistry as an integral component of lead generation. Mini Rev. Med. Chem. 5 7 (2005) 677-683
-
(2005)
Mini Rev. Med. Chem.
, vol.5
, Issue.7
, pp. 677-683
-
-
Roche, O.1
Guba, W.2
-
12
-
-
9144273857
-
Integration of virtual screening into the drug discovery process
-
Chin D.N., Chuaqui C.E., and Singh J. Integration of virtual screening into the drug discovery process. Mini Rev. Med. Chem. 4 10 (2004) 1053-1065
-
(2004)
Mini Rev. Med. Chem.
, vol.4
, Issue.10
, pp. 1053-1065
-
-
Chin, D.N.1
Chuaqui, C.E.2
Singh, J.3
-
13
-
-
4644235643
-
Virtual screening in lead discovery and optimization
-
Jain A.N. Virtual screening in lead discovery and optimization. Curr. Opin. Drug. Discov. Dev. 7 4 (2004) 396-403
-
(2004)
Curr. Opin. Drug. Discov. Dev.
, vol.7
, Issue.4
, pp. 396-403
-
-
Jain, A.N.1
-
14
-
-
33746171676
-
Current status of virtual screening as analysed by target class
-
Stoermer M.J. Current status of virtual screening as analysed by target class. Med. Chem. 2 1 (2006) 89-112
-
(2006)
Med. Chem.
, vol.2
, Issue.1
, pp. 89-112
-
-
Stoermer, M.J.1
-
15
-
-
33645860824
-
Integrating molecular design resources within modern drug discovery research: the Roche experience
-
Stahl M., Guba W., and Kansy M. Integrating molecular design resources within modern drug discovery research: the Roche experience. Drug Discov. Today 11 7-8 (2006) 326-333
-
(2006)
Drug Discov. Today
, vol.11
, Issue.7-8
, pp. 326-333
-
-
Stahl, M.1
Guba, W.2
Kansy, M.3
-
16
-
-
0347755449
-
Predicting molecular interactions in silico. I. A guide to pharmacophore identification and its applications to drug design
-
Dror O., Shulman-Peleg A., Nussinov R., and Wolfson H.J. Predicting molecular interactions in silico. I. A guide to pharmacophore identification and its applications to drug design. Curr. Med. Chem. 11 1 (2004) 71-90
-
(2004)
Curr. Med. Chem.
, vol.11
, Issue.1
, pp. 71-90
-
-
Dror, O.1
Shulman-Peleg, A.2
Nussinov, R.3
Wolfson, H.J.4
-
17
-
-
0347755444
-
Predicting molecular interactions in silico. II. Protein-protein and protein-drug docking
-
Schneidman-Duhovny D., Nussinov R., and Wolfson H.J. Predicting molecular interactions in silico. II. Protein-protein and protein-drug docking. Curr. Med. Chem. 11 1 (2004) 91-107
-
(2004)
Curr. Med. Chem.
, vol.11
, Issue.1
, pp. 91-107
-
-
Schneidman-Duhovny, D.1
Nussinov, R.2
Wolfson, H.J.3
-
18
-
-
32544435283
-
An analysis of genetic toxicity, reproductive and developmental toxicity, and carcinogenicity data. II. Identification of genotoxicants, reprotoxicants, and carcinogens using in silico methods
-
Matthews E.J., Kruhlak N.L., Cimino M.C., Benz R.D., and Contrera J.F. An analysis of genetic toxicity, reproductive and developmental toxicity, and carcinogenicity data. II. Identification of genotoxicants, reprotoxicants, and carcinogens using in silico methods. Regul. Toxicol. Pharmacol. 44 2 (2006) 97-110
-
(2006)
Regul. Toxicol. Pharmacol.
, vol.44
, Issue.2
, pp. 97-110
-
-
Matthews, E.J.1
Kruhlak, N.L.2
Cimino, M.C.3
Benz, R.D.4
Contrera, J.F.5
-
19
-
-
33745336208
-
Enhancing specificity and sensitivity of pharmacophore-based virtual screening by incorporating chemical and shape features-a case study of HIV protease inhibitors
-
Pandit D., So S.S., and Sun H. Enhancing specificity and sensitivity of pharmacophore-based virtual screening by incorporating chemical and shape features-a case study of HIV protease inhibitors. J. Chem. Inf. Model 46 3 (2006) 1236-1244
-
(2006)
J. Chem. Inf. Model
, vol.46
, Issue.3
, pp. 1236-1244
-
-
Pandit, D.1
So, S.S.2
Sun, H.3
-
20
-
-
33646258225
-
Using pharmacophore models to gain insight into structural binding and virtual screening: an application study with CDK2 and human DHFR
-
Toba S., Srinivasan J., Maynard A.J., and Sutter J. Using pharmacophore models to gain insight into structural binding and virtual screening: an application study with CDK2 and human DHFR. J. Chem. Inf. Model 46 2 (2006) 728-735
-
(2006)
J. Chem. Inf. Model
, vol.46
, Issue.2
, pp. 728-735
-
-
Toba, S.1
Srinivasan, J.2
Maynard, A.J.3
Sutter, J.4
-
21
-
-
2442709037
-
Chemical function based pharmacophore generation of endothelin-A selective receptor antagonists
-
Funk O.F., Kettmann V., Drimal J., and Langer T. Chemical function based pharmacophore generation of endothelin-A selective receptor antagonists. J. Med. Chem. 47 11 (2004) 2750-2760
-
(2004)
J. Med. Chem.
, vol.47
, Issue.11
, pp. 2750-2760
-
-
Funk, O.F.1
Kettmann, V.2
Drimal, J.3
Langer, T.4
-
22
-
-
0037468539
-
Non-peptide angiotensin II receptor antagonists: chemical feature based pharmacophore identification
-
Krovat E.M., and Langer T. Non-peptide angiotensin II receptor antagonists: chemical feature based pharmacophore identification. J. Med. Chem. 46 5 (2003) 716-726
-
(2003)
J. Med. Chem.
, vol.46
, Issue.5
, pp. 716-726
-
-
Krovat, E.M.1
Langer, T.2
-
23
-
-
4444249445
-
7-Substituted 2-phenyl-benzofurans as ER beta selective ligands
-
Collini M.D., Kaufman D.H., Manas E.S., Harris H.A., Henderson R.A., Xu Z.B., Unwalla R.J., and Miller C.P. 7-Substituted 2-phenyl-benzofurans as ER beta selective ligands. Bioorg. Med. Chem. Lett. 14 19 (2004) 4925-4929
-
(2004)
Bioorg. Med. Chem. Lett.
, vol.14
, Issue.19
, pp. 4925-4929
-
-
Collini, M.D.1
Kaufman, D.H.2
Manas, E.S.3
Harris, H.A.4
Henderson, R.A.5
Xu, Z.B.6
Unwalla, R.J.7
Miller, C.P.8
-
24
-
-
0038149156
-
ERbeta ligands. Part 1. The discovery of ERbeta selective ligands which embrace the 4-hydroxy-biphenyl template
-
Edsall Jr. R.J., Harris H.A., Manas E.S., and Mewshaw R.E. ERbeta ligands. Part 1. The discovery of ERbeta selective ligands which embrace the 4-hydroxy-biphenyl template. Bioorg. Med. Chem. 11 16 (2003) 3457-3474
-
(2003)
Bioorg. Med. Chem.
, vol.11
, Issue.16
, pp. 3457-3474
-
-
Edsall Jr., R.J.1
Harris, H.A.2
Manas, E.S.3
Mewshaw, R.E.4
-
25
-
-
4744376265
-
Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands
-
Malamas M.S., Manas E.S., McDevitt R.E., Gunawan I., Xu Z.B., Collini M.D., Miller C.P., Dinh T., Henderson R.A., Keith Jr. J.C., and Harris H.A. Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands. J. Med. Chem. 47 21 (2004) 5021-5040
-
(2004)
J. Med. Chem.
, vol.47
, Issue.21
, pp. 5021-5040
-
-
Malamas, M.S.1
Manas, E.S.2
McDevitt, R.E.3
Gunawan, I.4
Xu, Z.B.5
Collini, M.D.6
Miller, C.P.7
Dinh, T.8
Henderson, R.A.9
Keith Jr., J.C.10
Harris, H.A.11
-
26
-
-
0038003849
-
Constrained phytoestrogens and analogues as ERbeta selective ligands
-
Miller C.P., Collini M.D., and Harris H.A. Constrained phytoestrogens and analogues as ERbeta selective ligands. Bioorg. Med. Chem. Lett. 13 14 (2003) 2399-2403
-
(2003)
Bioorg. Med. Chem. Lett.
, vol.13
, Issue.14
, pp. 2399-2403
-
-
Miller, C.P.1
Collini, M.D.2
Harris, H.A.3
-
27
-
-
2142814284
-
ERbeta ligands. Part 2. Synthesis and structure-activity relationships of a series of 4-hydroxy-biphenyl-carbaldehyde oxime derivatives
-
Yang C., Edsall Jr. R., Harris H.A., Zhang X., Manas E.S., and Mewshaw R.E. ERbeta ligands. Part 2. Synthesis and structure-activity relationships of a series of 4-hydroxy-biphenyl-carbaldehyde oxime derivatives. Bioorg. Med. Chem. 12 10 (2004) 2553-2570
-
(2004)
Bioorg. Med. Chem.
, vol.12
, Issue.10
, pp. 2553-2570
-
-
Yang, C.1
Edsall Jr., R.2
Harris, H.A.3
Zhang, X.4
Manas, E.S.5
Mewshaw, R.E.6
-
28
-
-
8844263008
-
Docking and scoring in virtual screening for drug discovery: methods and applications
-
Kitchen D.B., Decornez H., Furr J.R., and Bajorath J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat. Rev. Drug Discov. 3 11 (2004) 935-949
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, Issue.11
, pp. 935-949
-
-
Kitchen, D.B.1
Decornez, H.2
Furr, J.R.3
Bajorath, J.4
-
29
-
-
13944263886
-
Comparison of automated docking programs as virtual screening tools
-
Cummings M.D., DesJarlais R.L., Gibbs A.C., Mohan V., and Jaeger E.P. Comparison of automated docking programs as virtual screening tools. J. Med. Chem. 48 4 (2005) 962-976
-
(2005)
J. Med. Chem.
, vol.48
, Issue.4
, pp. 962-976
-
-
Cummings, M.D.1
DesJarlais, R.L.2
Gibbs, A.C.3
Mohan, V.4
Jaeger, E.P.5
-
30
-
-
4544367743
-
Comparative evaluation of eight docking tools for docking and virtual screening accuracy
-
Kellenberger E., Rodrigo J., Muller P., and Rognan D. Comparative evaluation of eight docking tools for docking and virtual screening accuracy. Proteins 57 2 (2004) 225-242
-
(2004)
Proteins
, vol.57
, Issue.2
, pp. 225-242
-
-
Kellenberger, E.1
Rodrigo, J.2
Muller, P.3
Rognan, D.4
-
31
-
-
14044262243
-
Docking: successes and challenges
-
Mohan V., Gibbs A.C., Cummings M.D., Jaeger E.P., and DesJarlais R.L. Docking: successes and challenges. Curr. Pharm. Des. 11 3 (2005) 323-333
-
(2005)
Curr. Pharm. Des.
, vol.11
, Issue.3
, pp. 323-333
-
-
Mohan, V.1
Gibbs, A.C.2
Cummings, M.D.3
Jaeger, E.P.4
DesJarlais, R.L.5
-
32
-
-
3042806401
-
A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance
-
Perola E., Walters W.P., and Charifson P.S. A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance. Proteins 56 2 (2004) 235-249
-
(2004)
Proteins
, vol.56
, Issue.2
, pp. 235-249
-
-
Perola, E.1
Walters, W.P.2
Charifson, P.S.3
-
33
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren G.L., Andrews C.W., Capelli A.M., Clarke B., LaLonde J., Lambert M.H., Lindvall M., Nevins N., Semus S.F., Senger S., Tedesco G., Wall I.D., Woolven J.M., Peishoff C.E., and Head M.S. A critical assessment of docking programs and scoring functions. J. Med. Chem. 49 20 (2006) 5912-5931
-
(2006)
J. Med. Chem.
, vol.49
, Issue.20
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
Clarke, B.4
LaLonde, J.5
Lambert, M.H.6
Lindvall, M.7
Nevins, N.8
Semus, S.F.9
Senger, S.10
Tedesco, G.11
Wall, I.D.12
Woolven, J.M.13
Peishoff, C.E.14
Head, M.S.15
-
35
-
-
1642357706
-
The many roles of computation in drug discovery
-
Jorgensen W.L. The many roles of computation in drug discovery. Science 303 5665 (2004) 1813-1818
-
(2004)
Science
, vol.303
, Issue.5665
, pp. 1813-1818
-
-
Jorgensen, W.L.1
-
36
-
-
84889844714
-
Success stories of computer-aided design
-
Ekins S., and Wang B. (Eds), Wiley-Interscience
-
Kubinyi H. Success stories of computer-aided design. In: Ekins S., and Wang B. (Eds). Computer Applications in Pharmaceutical Research and Development (2006), Wiley-Interscience 377-424
-
(2006)
Computer Applications in Pharmaceutical Research and Development
, pp. 377-424
-
-
Kubinyi, H.1
-
38
-
-
1642350394
-
Recent development and application of virtual screening in drug discovery: an overview
-
Hou T., and Xu X. Recent development and application of virtual screening in drug discovery: an overview. Curr. Pharm. Des. 10 9 (2004) 1011-1033
-
(2004)
Curr. Pharm. Des.
, vol.10
, Issue.9
, pp. 1011-1033
-
-
Hou, T.1
Xu, X.2
-
39
-
-
38549159621
-
-
G. Keri, L. Orfi, D. Eros, B. Hegymegi-Barakonyi, C. Szantai-Kis, Z. Horvath, F. Waczek, J. Marosfalvi, I. Szabadkai, J. Pato, Z. Greff, D. Hafenbradl, H. Daub, G. Muller, B. Klebl, U. A, Signal transduction therapy with rationally designed kinase inhibitors, Curr. Signal Trans. Ther. 1 (2006) 67-95.
-
-
-
-
40
-
-
11144323163
-
Virtual screening of chemical libraries
-
Shoichet B.K. Virtual screening of chemical libraries. Nature 432 7019 (2004) 862-865
-
(2004)
Nature
, vol.432
, Issue.7019
, pp. 862-865
-
-
Shoichet, B.K.1
-
41
-
-
1642288258
-
Novel inhibitors of DNA Gyrase: 3D structure based biased needle screening, hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening
-
Boehm H.J., Boehringer M., Bur D., Gmuender H., Huber W., Klaus W., Kostrewa D., Kuehne H., Luebbers T., Meunier-Keller N., and Mueller F. Novel inhibitors of DNA Gyrase: 3D structure based biased needle screening, hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening. J. Med. Chem. 43 14 (2000) 2664-2674
-
(2000)
J. Med. Chem.
, vol.43
, Issue.14
, pp. 2664-2674
-
-
Boehm, H.J.1
Boehringer, M.2
Bur, D.3
Gmuender, H.4
Huber, W.5
Klaus, W.6
Kostrewa, D.7
Kuehne, H.8
Luebbers, T.9
Meunier-Keller, N.10
Mueller, F.11
-
42
-
-
0037161605
-
High-throughput screening for novel inhibitors of protein tyrosine phosphatase-1B
-
Doman T.N., McGovern S.L., Witherbee B.J., Kasten T.P., Kurumbail R., Stallings W.C., Connolly D.T., Shoichet B.K., and Molecular Docking. High-throughput screening for novel inhibitors of protein tyrosine phosphatase-1B. J. Med. Chem. 45 11 (2002) 2213-2221
-
(2002)
J. Med. Chem.
, vol.45
, Issue.11
, pp. 2213-2221
-
-
Doman, T.N.1
McGovern, S.L.2
Witherbee, B.J.3
Kasten, T.P.4
Kurumbail, R.5
Stallings, W.C.6
Connolly, D.T.7
Shoichet, B.K.8
Molecular Docking9
-
43
-
-
0035830767
-
Inhibitors of dihydrodipicolinate reductase, a key enzyme of the diaminopimelate pathway of Mycobacterium tuberculosis
-
Paiva A.M., Vanderwall D.E., Blanchard J.S., Kozarich J.W., Williamson J.M., and Kelly T.M. Inhibitors of dihydrodipicolinate reductase, a key enzyme of the diaminopimelate pathway of Mycobacterium tuberculosis. Biochim. Biophys. Acta 1545 1-2 (2001) 67-77
-
(2001)
Biochim. Biophys. Acta
, vol.1545
, Issue.1-2
, pp. 67-77
-
-
Paiva, A.M.1
Vanderwall, D.E.2
Blanchard, J.S.3
Kozarich, J.W.4
Williamson, J.M.5
Kelly, T.M.6
-
44
-
-
33745123314
-
Refining the multiple protein structure pharmacophore method: consistency across three independent HIV-1 protease models
-
Meagher K.L., Lerner M.G., and Carlson H.A. Refining the multiple protein structure pharmacophore method: consistency across three independent HIV-1 protease models. J. Med. Chem. 49 12 (2006) 3478-3484
-
(2006)
J. Med. Chem.
, vol.49
, Issue.12
, pp. 3478-3484
-
-
Meagher, K.L.1
Lerner, M.G.2
Carlson, H.A.3
-
45
-
-
17144385534
-
Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
-
Triballeau N., Acher F., Brabet I., Pin J.P., and Bertrand H.O. Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4. J. Med. Chem. 48 7 (2005) 2534-2547
-
(2005)
J. Med. Chem.
, vol.48
, Issue.7
, pp. 2534-2547
-
-
Triballeau, N.1
Acher, F.2
Brabet, I.3
Pin, J.P.4
Bertrand, H.O.5
-
46
-
-
0344496021
-
Successful shape-based virtual screening: the discovery of a potent inhibitor of the type I TGFbeta receptor kinase (TbetaRI)
-
Singh J., Chuaqui C.E., Boriack-Sjodin P.A., Lee W.C., Pontz T., Corbley M.J., Cheung H.K., Arduini R.M., Mead J.N., Newman M.N., Papadatos J.L., Bowes S., Josiah S., and Ling L.E. Successful shape-based virtual screening: the discovery of a potent inhibitor of the type I TGFbeta receptor kinase (TbetaRI). Bioorg. Med. Chem. Lett. 13 24 (2003) 4355-4359
-
(2003)
Bioorg. Med. Chem. Lett.
, vol.13
, Issue.24
, pp. 4355-4359
-
-
Singh, J.1
Chuaqui, C.E.2
Boriack-Sjodin, P.A.3
Lee, W.C.4
Pontz, T.5
Corbley, M.J.6
Cheung, H.K.7
Arduini, R.M.8
Mead, J.N.9
Newman, M.N.10
Papadatos, J.L.11
Bowes, S.12
Josiah, S.13
Ling, L.E.14
-
47
-
-
0037620888
-
Synthesis and activity of new aryl- and heteroaryl-substituted pyrazole inhibitors of the transforming growth factor-beta type I receptor kinase domain
-
Sawyer J.S., Anderson B.D., Beight D.W., Campbell R.M., Jones M.L., Herron D.K., Lampe J.W., McCowan J.R., McMillen W.T., Mort N., Parsons S., Smith E.C., Vieth M., Weir L.C., Yan L., Zhang F., and Yingling J.M. Synthesis and activity of new aryl- and heteroaryl-substituted pyrazole inhibitors of the transforming growth factor-beta type I receptor kinase domain. J. Med. Chem. 46 19 (2003) 3953-3956
-
(2003)
J. Med. Chem.
, vol.46
, Issue.19
, pp. 3953-3956
-
-
Sawyer, J.S.1
Anderson, B.D.2
Beight, D.W.3
Campbell, R.M.4
Jones, M.L.5
Herron, D.K.6
Lampe, J.W.7
McCowan, J.R.8
McMillen, W.T.9
Mort, N.10
Parsons, S.11
Smith, E.C.12
Vieth, M.13
Weir, L.C.14
Yan, L.15
Zhang, F.16
Yingling, J.M.17
-
48
-
-
33744832614
-
1A agonist (PRX-00023) for the treatment of anxiety and depression
-
1A agonist (PRX-00023) for the treatment of anxiety and depression. J. Med. Chem. 49 11 (2006) 3116-3135
-
(2006)
J. Med. Chem.
, vol.49
, Issue.11
, pp. 3116-3135
-
-
Becker, O.M.1
Dhanoa, D.S.2
Marantz, Y.3
Chen, D.4
Shacham, S.5
Cheruku, S.6
Heifetz, A.7
Mohanty, P.8
Fichman, M.9
Sharadendu, A.10
Nudelman, R.11
Kauffman, M.12
Noiman, S.13
-
49
-
-
26444452660
-
Pharmacophore modeling, docking, and principal component analysis based clustering: combined computer-assisted approaches to identify new inhibitors of the human rhinovirus coat protein
-
Steindl T.M., Crump C.E., Hayden F.G., and Langer T. Pharmacophore modeling, docking, and principal component analysis based clustering: combined computer-assisted approaches to identify new inhibitors of the human rhinovirus coat protein. J. Med. Chem. 48 20 (2005) 6250-6260
-
(2005)
J. Med. Chem.
, vol.48
, Issue.20
, pp. 6250-6260
-
-
Steindl, T.M.1
Crump, C.E.2
Hayden, F.G.3
Langer, T.4
-
50
-
-
11144320699
-
Navigating chemical space for biology and medicine
-
Lipinski C., and Hopkins A. Navigating chemical space for biology and medicine. Nature 432 7019 (2004) 855-861
-
(2004)
Nature
, vol.432
, Issue.7019
, pp. 855-861
-
-
Lipinski, C.1
Hopkins, A.2
-
51
-
-
33745645832
-
Discovery of a nanomolar inhibitor of the human murine double minute 2 (MDM2)-p53 interaction through an integrated, virtual database screening strategy
-
Lu Y., Nikolovska-Coleska Z., Fang X., Gao W., Shangary S., Qiu S., Qin D., and Wang S. Discovery of a nanomolar inhibitor of the human murine double minute 2 (MDM2)-p53 interaction through an integrated, virtual database screening strategy. J. Med. Chem. 49 13 (2006) 3759-3762
-
(2006)
J. Med. Chem.
, vol.49
, Issue.13
, pp. 3759-3762
-
-
Lu, Y.1
Nikolovska-Coleska, Z.2
Fang, X.3
Gao, W.4
Shangary, S.5
Qiu, S.6
Qin, D.7
Wang, S.8
-
52
-
-
1842450527
-
Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening
-
Lyne P.D., Kenny P.W., Cosgrove D.A., Deng C., Zabludoff S., Wendoloski J.J., and Ashwell S. Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening. J. Med. Chem. 47 8 (2004) 1962-1968
-
(2004)
J. Med. Chem.
, vol.47
, Issue.8
, pp. 1962-1968
-
-
Lyne, P.D.1
Kenny, P.W.2
Cosgrove, D.A.3
Deng, C.4
Zabludoff, S.5
Wendoloski, J.J.6
Ashwell, S.7
-
53
-
-
0038458856
-
Chemical feature-based pharmacophores and virtual library screening for discovery of new leads
-
Langer T., and Krovat E.M. Chemical feature-based pharmacophores and virtual library screening for discovery of new leads. Curr. Opin. Drug Discov. Dev. 6 3 (2003) 370-376
-
(2003)
Curr. Opin. Drug Discov. Dev.
, vol.6
, Issue.3
, pp. 370-376
-
-
Langer, T.1
Krovat, E.M.2
-
54
-
-
33644861259
-
Oncology exploration: charting cancer medicinal chemistry space
-
Lloyd D.G., Golfis G., Knox A.J.S., Fayne D., Meegan M.J., and Oprea T.I. Oncology exploration: charting cancer medicinal chemistry space. Drug Discov. Today 11 3-4 (2006) 149-159
-
(2006)
Drug Discov. Today
, vol.11
, Issue.3-4
, pp. 149-159
-
-
Lloyd, D.G.1
Golfis, G.2
Knox, A.J.S.3
Fayne, D.4
Meegan, M.J.5
Oprea, T.I.6
-
55
-
-
33646449916
-
Structure-based drug design of a novel family of PPARγ partial agonists: virtual screening, X-ray crystallography, and in vitro/in vivo biological activities
-
Lu I.L., Huang C.F., Peng Y.H., Lin Y.T., Hsieh H.P., Chen C.T., Lien T.W., Lee H.J., Mahindroo N., Prakash E., Yueh A., Chen H.Y., Goparaju C.M.V., Chen X., Liao C.C., Chao Y.S., Hsu J.T.A., and Wu S.Y. Structure-based drug design of a novel family of PPARγ partial agonists: virtual screening, X-ray crystallography, and in vitro/in vivo biological activities. J. Med. Chem. 49 9 (2006) 2703-2712
-
(2006)
J. Med. Chem.
, vol.49
, Issue.9
, pp. 2703-2712
-
-
Lu, I.L.1
Huang, C.F.2
Peng, Y.H.3
Lin, Y.T.4
Hsieh, H.P.5
Chen, C.T.6
Lien, T.W.7
Lee, H.J.8
Mahindroo, N.9
Prakash, E.10
Yueh, A.11
Chen, H.Y.12
Goparaju, C.M.V.13
Chen, X.14
Liao, C.C.15
Chao, Y.S.16
Hsu, J.T.A.17
Wu, S.Y.18
-
56
-
-
0141992809
-
Molecular modeling of the three-dimensional structure of dopamine 3 (D3) subtype receptor: discovery of novel and potent D3 ligands through a hybrid pharmacophore- and structure-based database searching approach
-
Varady J., Wu X., Fang X., Min J., Hu Z., Levant B., and Wang S. Molecular modeling of the three-dimensional structure of dopamine 3 (D3) subtype receptor: discovery of novel and potent D3 ligands through a hybrid pharmacophore- and structure-based database searching approach. J. Med. Chem. 46 21 (2003) 4377-4392
-
(2003)
J. Med. Chem.
, vol.46
, Issue.21
, pp. 4377-4392
-
-
Varady, J.1
Wu, X.2
Fang, X.3
Min, J.4
Hu, Z.5
Levant, B.6
Wang, S.7
-
57
-
-
33644774469
-
New leads of metallo-[beta]-lactamase inhibitors from structure-based pharmacophore design
-
Olsen L., Jost S., Adolph H.-W., Pettersson I., Hemmingsen L., and Jorgensen F.S. New leads of metallo-[beta]-lactamase inhibitors from structure-based pharmacophore design. Bioorg. Med. Chem. 14 8 (2006) 2627-2635
-
(2006)
Bioorg. Med. Chem.
, vol.14
, Issue.8
, pp. 2627-2635
-
-
Olsen, L.1
Jost, S.2
Adolph, H.-W.3
Pettersson, I.4
Hemmingsen, L.5
Jorgensen, F.S.6
-
58
-
-
33744783960
-
A combination of docking/dynamics simulations and pharmacophoric modeling to discover new dual c-Src/Abl kinase inhibitors
-
Manetti F., Locatelli G.A., Maga G., Schenone S., Modugno M., Forli S., Corelli F., and Botta M. A combination of docking/dynamics simulations and pharmacophoric modeling to discover new dual c-Src/Abl kinase inhibitors. J. Med. Chem. 49 11 (2006) 3278-3286
-
(2006)
J. Med. Chem.
, vol.49
, Issue.11
, pp. 3278-3286
-
-
Manetti, F.1
Locatelli, G.A.2
Maga, G.3
Schenone, S.4
Modugno, M.5
Forli, S.6
Corelli, F.7
Botta, M.8
-
59
-
-
33746763743
-
3 antagonists as novel anticancer agents
-
3 antagonists as novel anticancer agents. J. Med. Chem. 49 15 (2006) 4526-4534
-
(2006)
J. Med. Chem.
, vol.49
, Issue.15
, pp. 4526-4534
-
-
Dayam, R.1
Aiello, F.2
Deng, J.3
Wu, Y.4
Garofalo, A.5
Chen, X.6
Neamati, N.7
-
60
-
-
24144484634
-
Application of the in combo screening approach for the discovery of non-alkaloid acetylcholinesterase inhibitors from Cichorium intybus
-
Rollinger J.J.M., Mocka P.P., Zidorn C.C., Ellmerer E.E.P., Langer T.T., and Stuppner H.H. Application of the in combo screening approach for the discovery of non-alkaloid acetylcholinesterase inhibitors from Cichorium intybus. Curr. Drug Discov. Technol. 2 3 (2005) 185-193
-
(2005)
Curr. Drug Discov. Technol.
, vol.2
, Issue.3
, pp. 185-193
-
-
Rollinger, J.J.M.1
Mocka, P.P.2
Zidorn, C.C.3
Ellmerer, E.E.P.4
Langer, T.T.5
Stuppner, H.H.6
-
61
-
-
33744804321
-
Strategies for efficient lead structure discovery from natural products
-
Rollinger J.M. Strategies for efficient lead structure discovery from natural products. Curr. Med. Chem. 13 13 (2006) 1491-1507
-
(2006)
Curr. Med. Chem.
, vol.13
, Issue.13
, pp. 1491-1507
-
-
Rollinger, J.M.1
-
62
-
-
20544452815
-
Discovering COX-inhibiting constituents of Morus root bark: activity-guided versus computer-aided methods
-
Rollinger J.M., Bodensieck A., Seger C., Ellmerer E.P., Bauer R., Langer T., and Stuppner H. Discovering COX-inhibiting constituents of Morus root bark: activity-guided versus computer-aided methods. Planta Med. 71 5 (2005) 399-405
-
(2005)
Planta Med.
, vol.71
, Issue.5
, pp. 399-405
-
-
Rollinger, J.M.1
Bodensieck, A.2
Seger, C.3
Ellmerer, E.P.4
Bauer, R.5
Langer, T.6
Stuppner, H.7
-
63
-
-
1842639389
-
Combining ethnopharmacology and virtual screening for lead structure discovery: COX-inhibitors as application example
-
Rollinger J.M., Haupt S., Stuppner H., and Langer T. Combining ethnopharmacology and virtual screening for lead structure discovery: COX-inhibitors as application example. J. Chem. Inf. Comput. Sci. 44 2 (2004) 480-488
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, Issue.2
, pp. 480-488
-
-
Rollinger, J.M.1
Haupt, S.2
Stuppner, H.3
Langer, T.4
-
64
-
-
9744238799
-
Acetylcholinesterase inhibitory activity of scopolin and scopoletin discovered by virtual screening of natural products
-
Rollinger J.M., Hornick A., Langer T., Stuppner H., and Prast H. Acetylcholinesterase inhibitory activity of scopolin and scopoletin discovered by virtual screening of natural products. J. Med. Chem. 47 25 (2004) 6248-6254
-
(2004)
J. Med. Chem.
, vol.47
, Issue.25
, pp. 6248-6254
-
-
Rollinger, J.M.1
Hornick, A.2
Langer, T.3
Stuppner, H.4
Prast, H.5
-
65
-
-
33745199815
-
Virtual ligand screening: strategies, perspectives and limitations
-
Klebe G. Virtual ligand screening: strategies, perspectives and limitations. Drug Discov. Today 11 13-14 (2006) 580-594
-
(2006)
Drug Discov. Today
, vol.11
, Issue.13-14
, pp. 580-594
-
-
Klebe, G.1
-
66
-
-
33745595051
-
Minimizing false positives in kinase virtual screens
-
Perola E. Minimizing false positives in kinase virtual screens. Proteins 64 2 (2006) 422-435
-
(2006)
Proteins
, vol.64
, Issue.2
, pp. 422-435
-
-
Perola, E.1
-
67
-
-
33748758728
-
Expect the unexpected or caveat for drug designers: multiple structure determinations using aldose reductase crystals treated under varying soaking and co-crystallisation conditions
-
Steuber H., Zentgraf M., Gerlach C., Sotriffer C.A., Heine A., and Klebe G. Expect the unexpected or caveat for drug designers: multiple structure determinations using aldose reductase crystals treated under varying soaking and co-crystallisation conditions. J. Mol. Biol. 363 1 (2006) 174-187
-
(2006)
J. Mol. Biol.
, vol.363
, Issue.1
, pp. 174-187
-
-
Steuber, H.1
Zentgraf, M.2
Gerlach, C.3
Sotriffer, C.A.4
Heine, A.5
Klebe, G.6
-
68
-
-
33749245117
-
Prediction of protein-ligand interactions. Docking and scoring: successes and gaps
-
Leach A.R., Shoichet B.K., and Peishoff C.E. Prediction of protein-ligand interactions. Docking and scoring: successes and gaps. J. Med. Chem. 49 20 (2006) 5851-5855
-
(2006)
J. Med. Chem.
, vol.49
, Issue.20
, pp. 5851-5855
-
-
Leach, A.R.1
Shoichet, B.K.2
Peishoff, C.E.3
-
69
-
-
0036633496
-
Virtual screening using grid computing: the screensaver project
-
Richards W.G. Virtual screening using grid computing: the screensaver project. Nat. Rev. Drug Discov. 1 7 (2002) 551-555
-
(2002)
Nat. Rev. Drug Discov.
, vol.1
, Issue.7
, pp. 551-555
-
-
Richards, W.G.1
-
70
-
-
4344645978
-
Can the pharmaceutical industry reduce attrition rates?
-
Kola I., and Landis J. Can the pharmaceutical industry reduce attrition rates?. Nat. Rev. Drug Discov. 3 8 (2004) 711-715
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, Issue.8
, pp. 711-715
-
-
Kola, I.1
Landis, J.2
-
71
-
-
33745191450
-
Use of computer-assisted prediction of toxic effects of chemical substances
-
Simon-Hettich B., Rothfuss A., and Steger-Hartmann T. Use of computer-assisted prediction of toxic effects of chemical substances. Toxicology 224 1-2 (2006) 156-162
-
(2006)
Toxicology
, vol.224
, Issue.1-2
, pp. 156-162
-
-
Simon-Hettich, B.1
Rothfuss, A.2
Steger-Hartmann, T.3
-
72
-
-
84958472483
-
On the connection between chemical constitution and physiological action. Part I. On the physiological action of the salts of the ammonia bases derived from Strycnia, Brucia, Thebaia, Codeia, Morphia, and Nicotinia
-
Crum Brown A., and Frazer T. On the connection between chemical constitution and physiological action. Part I. On the physiological action of the salts of the ammonia bases derived from Strycnia, Brucia, Thebaia, Codeia, Morphia, and Nicotinia. Trans. R. Soc. Edinburgh 25 (1868) 151-203
-
(1868)
Trans. R. Soc. Edinburgh
, vol.25
, pp. 151-203
-
-
Crum Brown, A.1
Frazer, T.2
-
73
-
-
0040914011
-
Rho-sigma-pi analysis. A method for the correlation of biological activity and chemical structure
-
Hansch C., and Fujita T. Rho-sigma-pi analysis. A method for the correlation of biological activity and chemical structure. J. Am. Chem. Soc. 86 (1964) 1616-1626
-
(1964)
J. Am. Chem. Soc.
, vol.86
, pp. 1616-1626
-
-
Hansch, C.1
Fujita, T.2
-
74
-
-
33947490704
-
The use of substituent constants in the analysis of the structure-activity relationship in penicillin derivatives
-
Hansch C., and Steward A.R. The use of substituent constants in the analysis of the structure-activity relationship in penicillin derivatives. J. Med. Chem. 44 (1964) 691-694
-
(1964)
J. Med. Chem.
, vol.44
, pp. 691-694
-
-
Hansch, C.1
Steward, A.R.2
-
75
-
-
16844379228
-
Practical considerations on the use of predictive models for regulatory purposes
-
Tunkel J., Mayo K., Austin C., Hickerson A., and Howard P. Practical considerations on the use of predictive models for regulatory purposes. Environ. Sci. Technol. 39 7 (2005) 2188-2199
-
(2005)
Environ. Sci. Technol.
, vol.39
, Issue.7
, pp. 2188-2199
-
-
Tunkel, J.1
Mayo, K.2
Austin, C.3
Hickerson, A.4
Howard, P.5
-
76
-
-
38549152404
-
-
J.F. Contrera, E.J. Matthews, N.L. Kruhlak, R.D. Benz, Development and application of computational toxicology and informatics resources at the FDA CDER Office of Pharmaceutical Sciences. http://www.fda.gov/ohrms/dockets/ac/04/slides/2004-4078S1_06_Contrera.pp t#468,10,Slide, 2004.
-
-
-
-
77
-
-
21744437416
-
QSAR modeling of carcinogenic risk using discriminant analysis and topological molecular descriptors
-
Contrera J.F., Maclaughlin P., Hall L.H., and Kier L.B. QSAR modeling of carcinogenic risk using discriminant analysis and topological molecular descriptors. Curr. Drug Discov. Technol. 2 2 (2005) 55-67
-
(2005)
Curr. Drug Discov. Technol.
, vol.2
, Issue.2
, pp. 55-67
-
-
Contrera, J.F.1
Maclaughlin, P.2
Hall, L.H.3
Kier, L.B.4
-
78
-
-
8844287955
-
Assessment of the health effects of chemicals in humans. I. QSAR estimation of the maximum recommended therapeutic dose (MRTD) and no effect level (NOEL) of organic chemicals based on clinical trial data
-
Matthews E.J., Kruhlak N.L., Benz R.D., and Contrera J.F. Assessment of the health effects of chemicals in humans. I. QSAR estimation of the maximum recommended therapeutic dose (MRTD) and no effect level (NOEL) of organic chemicals based on clinical trial data. Curr. Drug Discov. Technol. 1 1 (2004) 61-76
-
(2004)
Curr. Drug Discov. Technol.
, vol.1
, Issue.1
, pp. 61-76
-
-
Matthews, E.J.1
Kruhlak, N.L.2
Benz, R.D.3
Contrera, J.F.4
-
79
-
-
8844236997
-
Estimating the safe starting dose in phase I clinical trials and no observed effect level based on QSAR modeling of the human maximum recommended daily dose
-
Contrera J.F., Matthews E.J., Kruhlak N.L., and Benz R.D. Estimating the safe starting dose in phase I clinical trials and no observed effect level based on QSAR modeling of the human maximum recommended daily dose. Regul. Toxicol. Pharmacol. 40 3 (2004) 185-206
-
(2004)
Regul. Toxicol. Pharmacol.
, vol.40
, Issue.3
, pp. 185-206
-
-
Contrera, J.F.1
Matthews, E.J.2
Kruhlak, N.L.3
Benz, R.D.4
-
80
-
-
33644857872
-
Optimizing the use of open-source software applications in drug discovery
-
Geldenhuys W.J., Gaasch K.E., Watson M., Allen D.D., and Van der Schyf C.J. Optimizing the use of open-source software applications in drug discovery. Drug Discov. Today 11 3-4 (2006) 127-132
-
(2006)
Drug Discov. Today
, vol.11
, Issue.3-4
, pp. 127-132
-
-
Geldenhuys, W.J.1
Gaasch, K.E.2
Watson, M.3
Allen, D.D.4
Van der Schyf, C.J.5
-
81
-
-
10044246303
-
Design and characterization of libraries of molecular fragments for use in NMR screening against protein targets
-
Baurin N., Aboul-Ela F., Barril X., Davis B., Drysdale M., Dymock B., Finch H., Fromont C., Richardson C., Simmonite H., and Hubbard R.E. Design and characterization of libraries of molecular fragments for use in NMR screening against protein targets. J. Chem. Inf. Comput Sci. 44 6 (2004) 2157-2166
-
(2004)
J. Chem. Inf. Comput Sci.
, vol.44
, Issue.6
, pp. 2157-2166
-
-
Baurin, N.1
Aboul-Ela, F.2
Barril, X.3
Davis, B.4
Drysdale, M.5
Dymock, B.6
Finch, H.7
Fromont, C.8
Richardson, C.9
Simmonite, H.10
Hubbard, R.E.11
-
82
-
-
4344592378
-
Fragment-based lead discovery
-
Rees D.C., Congreve M., Murray C.W., and Carr R. Fragment-based lead discovery. Nat. Rev. Drug Discov. 3 8 (2004) 660-672
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, Issue.8
, pp. 660-672
-
-
Rees, D.C.1
Congreve, M.2
Murray, C.W.3
Carr, R.4
-
83
-
-
23844449940
-
Computer-based de novo design of drug-like molecules
-
Schneider G., and Fechner U. Computer-based de novo design of drug-like molecules. Nat. Rev. Drug Discov. 4 8 (2005) 649-663
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, Issue.8
, pp. 649-663
-
-
Schneider, G.1
Fechner, U.2
-
85
-
-
20844432908
-
Can cell systems biology rescue drug discovery?
-
Butcher E.C. Can cell systems biology rescue drug discovery?. Nat. Rev. Drug. Discov. 4 6 (2005) 461-467
-
(2005)
Nat. Rev. Drug. Discov.
, vol.4
, Issue.6
, pp. 461-467
-
-
Butcher, E.C.1
-
87
-
-
5044229321
-
The impact of systems approaches on biological problems in drug discovery
-
Hood L., and Perlmutter R.M. The impact of systems approaches on biological problems in drug discovery. Nat. Biotechnol. 22 10 (2004) 1215-1217
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.10
, pp. 1215-1217
-
-
Hood, L.1
Perlmutter, R.M.2
-
88
-
-
1042302103
-
Early prediction of drug metabolism and toxicity: systems biology approach and modeling
-
Bugrim A., Nikolskaya T., and Nikolsky Y. Early prediction of drug metabolism and toxicity: systems biology approach and modeling. Drug Discov. Today 9 3 (2004) 127-135
-
(2004)
Drug Discov. Today
, vol.9
, Issue.3
, pp. 127-135
-
-
Bugrim, A.1
Nikolskaya, T.2
Nikolsky, Y.3
-
89
-
-
30144443169
-
Systems-ADME/Tox: resources and network approaches
-
Ekins S. Systems-ADME/Tox: resources and network approaches. J. Pharmacol. Toxicol. Meth. 53 1 (2006) 38-66
-
(2006)
J. Pharmacol. Toxicol. Meth.
, vol.53
, Issue.1
, pp. 38-66
-
-
Ekins, S.1
-
90
-
-
4444343665
-
Assessing the impact of predictive biosimulation on drug discovery and development
-
Michelson S. Assessing the impact of predictive biosimulation on drug discovery and development. J. Bioinf. Comput. Biol. 1 1 (2003) 169-177
-
(2003)
J. Bioinf. Comput. Biol.
, vol.1
, Issue.1
, pp. 169-177
-
-
Michelson, S.1
-
91
-
-
33745104130
-
The impact of systems biology and biosimulation on drug discovery and development
-
Michelson S. The impact of systems biology and biosimulation on drug discovery and development. Mol. Biosyst. 2 6-7 (2006) 288-291
-
(2006)
Mol. Biosyst.
, vol.2
, Issue.6-7
, pp. 288-291
-
-
Michelson, S.1
-
92
-
-
0037441522
-
Advancing drug discovery through systems biology
-
Davidov E., Holland J., Marple E., and Naylor S. Advancing drug discovery through systems biology. Drug Discov. Today 8 4 (2003) 175-183
-
(2003)
Drug Discov. Today
, vol.8
, Issue.4
, pp. 175-183
-
-
Davidov, E.1
Holland, J.2
Marple, E.3
Naylor, S.4
-
93
-
-
33746075170
-
The application of systems biology to drug discovery
-
Cho C.R., Labow M., Reinhardt M., Van Oostrum J., and Peitsch M.C. The application of systems biology to drug discovery. Curr. Opin. Chem. Biol. 10 4 (2006) 294-302
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, Issue.4
, pp. 294-302
-
-
Cho, C.R.1
Labow, M.2
Reinhardt, M.3
Van Oostrum, J.4
Peitsch, M.C.5
-
94
-
-
0043069489
-
Drug research: myths, hype and reality
-
Kubinyi H. Drug research: myths, hype and reality. Nat. Rev. Drug Discov. 2 8 (2003) 665-668
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, Issue.8
, pp. 665-668
-
-
Kubinyi, H.1
|