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Volumn 23, Issue 3, 2011, Pages 258-265

Common ground: Small RNA programming and chromatin modifications

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; MICRORNA; PIWI INTERACTING RNA; SMALL INTERFERING RNA;

EID: 79957844677     PISSN: 09550674     EISSN: 18790410     Source Type: Journal    
DOI: 10.1016/j.ceb.2011.03.005     Document Type: Review
Times cited : (62)

References (67)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8Å resolution
    • Luger K., Mäder A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8Å resolution. Nature 1997, 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 2
    • 77952243549 scopus 로고    scopus 로고
    • Building centromeres: home sweet home or a nomadic existence?
    • Buscaino A., Allshire R., Pidoux A. Building centromeres: home sweet home or a nomadic existence?. Curr Opin Genet Dev 2010, 20:118-126.
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 118-126
    • Buscaino, A.1    Allshire, R.2    Pidoux, A.3
  • 3
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • Volpe T.A., Kidner C., Hall I.M., Teng G., Grewal S.I.S., Martienssen R.A. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 2002, 297:1833-1837.
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.S.5    Martienssen, R.A.6
  • 4
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon G.J. RNA interference. Nature 2002, 418:244-251.
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 5
    • 78049354472 scopus 로고    scopus 로고
    • A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
    • Bourc'his D., Voinnet O. A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 2010, 330:617-622.
    • (2010) Science , vol.330 , pp. 617-622
    • Bourc'his, D.1    Voinnet, O.2
  • 6
    • 58749097426 scopus 로고    scopus 로고
    • Small RNAs in transcriptional gene silencing and genome defence
    • Moazed D. Small RNAs in transcriptional gene silencing and genome defence. Nature 2009, 457:413-420.
    • (2009) Nature , vol.457 , pp. 413-420
    • Moazed, D.1
  • 7
    • 0036828639 scopus 로고    scopus 로고
    • The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
    • Carmell M.A., Xuan Z., Zhang M.Q., Hannon G.J. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev 2002, 16:2733-2742.
    • (2002) Genes Dev , vol.16 , pp. 2733-2742
    • Carmell, M.A.1    Xuan, Z.2    Zhang, M.Q.3    Hannon, G.J.4
  • 8
    • 78751482329 scopus 로고    scopus 로고
    • How to slice: snapshots of Argonaute in action
    • Parker J.S. How to slice: snapshots of Argonaute in action. Silence 2010, 1:3.
    • (2010) Silence , vol.1 , pp. 3
    • Parker, J.S.1
  • 10
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M., Zamore P.D. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009, 10:94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 11
    • 38949208022 scopus 로고    scopus 로고
    • Cell cycle control of centromeric repeat transcription and heterochromatin assembly
    • Chen E.S., Zhang K., Nicolas E., Cam H.P., Zofall M., Grewal S.I.S. Cell cycle control of centromeric repeat transcription and heterochromatin assembly. Nature 2008, 451:734-737.
    • (2008) Nature , vol.451 , pp. 734-737
    • Chen, E.S.1    Zhang, K.2    Nicolas, E.3    Cam, H.P.4    Zofall, M.5    Grewal, S.I.S.6
  • 13
    • 41449089409 scopus 로고    scopus 로고
    • RNA interference guides histone modification during the S phase of chromosomal replication
    • Kloc A., Zaratiegui M., Nora E., Martienssen R. RNA interference guides histone modification during the S phase of chromosomal replication. Curr Biol 2008, 18:490-495.
    • (2008) Curr Biol , vol.18 , pp. 490-495
    • Kloc, A.1    Zaratiegui, M.2    Nora, E.3    Martienssen, R.4
  • 14
    • 60849132182 scopus 로고    scopus 로고
    • Localization of gene products using a chromosomally tagged GFP-fusion library in the fission yeast Schizosaccharomyces pombe
    • Hayashi A., Ding D.-Q., Da-Qiao D., Tsutsumi C., Chikashige Y., Masuda H., Haraguchi T., Hiraoka Y. Localization of gene products using a chromosomally tagged GFP-fusion library in the fission yeast Schizosaccharomyces pombe. Genes Cells 2009, 14:217-225.
    • (2009) Genes Cells , vol.14 , pp. 217-225
    • Hayashi, A.1    Ding, D.-Q.2    Da-Qiao, D.3    Tsutsumi, C.4    Chikashige, Y.5    Masuda, H.6    Haraguchi, T.7    Hiraoka, Y.8
  • 16
    • 74049138689 scopus 로고    scopus 로고
    • Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly
    • Emmerth S., Schober H., Gaidatzis D., Roloff T., Jacobeit K., Bühler M. Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly. Dev Cell 2010, 18:102-113.
    • (2010) Dev Cell , vol.18 , pp. 102-113
    • Emmerth, S.1    Schober, H.2    Gaidatzis, D.3    Roloff, T.4    Jacobeit, K.5    Bühler, M.6
  • 18
  • 20
    • 10944248935 scopus 로고    scopus 로고
    • Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs
    • Motamedi M.R., Verdel A., Colmenares S.U., Gerber S.A., Gygi S.P., Moazed D. Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell 2004, 119:789-802.
    • (2004) Cell , vol.119 , pp. 789-802
    • Motamedi, M.R.1    Verdel, A.2    Colmenares, S.U.3    Gerber, S.A.4    Gygi, S.P.5    Moazed, D.6
  • 22
    • 34547211819 scopus 로고    scopus 로고
    • Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi
    • Colmenares S.U., Buker S.M., Bühler M., Dlakić M., Moazed D. Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi. Mol Cell 2007, 27:449-461.
    • (2007) Mol Cell , vol.27 , pp. 449-461
    • Colmenares, S.U.1    Buker, S.M.2    Bühler, M.3    Dlakić, M.4    Moazed, D.5
  • 23
    • 26944450776 scopus 로고    scopus 로고
    • A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation
    • Hong E-JE, Villén J., Gerace E.L., Gygi S.P., Moazed D. A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation. RNA Biol 2005, 2:106-111.
    • (2005) RNA Biol , vol.2 , pp. 106-111
    • Hong, E.-J.E.1    Villén, J.2    Gerace, E.L.3    Gygi, S.P.4    Moazed, D.5
  • 24
    • 23044504238 scopus 로고    scopus 로고
    • A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation
    • Horn P.J., Bastie J.-N., Peterson C.L. A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation. Genes Dev 2005, 19:1705-1714.
    • (2005) Genes Dev , vol.19 , pp. 1705-1714
    • Horn, P.J.1    Bastie, J.-N.2    Peterson, C.L.3
  • 25
    • 27144554969 scopus 로고    scopus 로고
    • Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin
    • Jia S., Kobayashi R., Grewal S.I.S. Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin. Nat Cell Biol 2005, 7:1007-1013.
    • (2005) Nat Cell Biol , vol.7 , pp. 1007-1013
    • Jia, S.1    Kobayashi, R.2    Grewal, S.I.S.3
  • 26
    • 23944483515 scopus 로고    scopus 로고
    • Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification
    • Li F., Goto D.B., Zaratiegui M., Tang X., Martienssen R., Cande W.Z. Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification. Curr Biol 2005, 15:1448-1457.
    • (2005) Curr Biol , vol.15 , pp. 1448-1457
    • Li, F.1    Goto, D.B.2    Zaratiegui, M.3    Tang, X.4    Martienssen, R.5    Cande, W.Z.6
  • 27
    • 31544449153 scopus 로고    scopus 로고
    • The Clr7 and Clr8 directionality factors and the Pcu4 cullin mediate heterochromatin formation in the fission yeast Schizosaccharomyces pombe
    • Thon G., Hansen K.R., Altes S.P., Sidhu D., Singh G., Verhein-Hansen J., Bonaduce M.J., Klar A.J.S. The Clr7 and Clr8 directionality factors and the Pcu4 cullin mediate heterochromatin formation in the fission yeast Schizosaccharomyces pombe. Genetics 2005, 171:1583-1595.
    • (2005) Genetics , vol.171 , pp. 1583-1595
    • Thon, G.1    Hansen, K.R.2    Altes, S.P.3    Sidhu, D.4    Singh, G.5    Verhein-Hansen, J.6    Bonaduce, M.J.7    Klar, A.J.S.8
  • 29
    • 6344285337 scopus 로고    scopus 로고
    • A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast
    • Sadaie M., Iida T., Urano T., Nakayama J.-I. A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast. EMBO J 2004, 23:3825-3835.
    • (2004) EMBO J , vol.23 , pp. 3825-3835
    • Sadaie, M.1    Iida, T.2    Urano, T.3    Nakayama, J.-I.4
  • 30
    • 41649092299 scopus 로고    scopus 로고
    • Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin
    • Zhang M., Fischle G. Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin. Nat Struct Mol Biol 2008.
    • (2008) Nat Struct Mol Biol
    • Zhang, M.1    Fischle, G.2
  • 31
    • 77955903649 scopus 로고    scopus 로고
    • Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions
    • Garcia J.F., Dumesic P.A., Hartley P.D., El-Samad H., Madhani H.D. Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions. Genes Dev 2010, 24:1758-1771.
    • (2010) Genes Dev , vol.24 , pp. 1758-1771
    • Garcia, J.F.1    Dumesic, P.A.2    Hartley, P.D.3    El-Samad, H.4    Madhani, H.D.5
  • 32
    • 34247609855 scopus 로고    scopus 로고
    • Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection
    • Nicolas E., Yamada T., Cam H.P., Fitzgerald P.C., Kobayashi R., Grewal S.I.S. Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection. Nat Struct Mol Biol 2007, 14:372-380.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 372-380
    • Nicolas, E.1    Yamada, T.2    Cam, H.P.3    Fitzgerald, P.C.4    Kobayashi, R.5    Grewal, S.I.S.6
  • 33
    • 0038714132 scopus 로고    scopus 로고
    • Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast
    • Shankaranarayana G.D., Motamedi M.R., Moazed D., Grewal S.I.S. Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast. Curr Biol 2003, 13:1240-1246.
    • (2003) Curr Biol , vol.13 , pp. 1240-1246
    • Shankaranarayana, G.D.1    Motamedi, M.R.2    Moazed, D.3    Grewal, S.I.S.4
  • 36
    • 77950473704 scopus 로고    scopus 로고
    • A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly
    • Xhemalce B., Kouzarides T. A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly. Genes Dev 2010, 24:647-652.
    • (2010) Genes Dev , vol.24 , pp. 647-652
    • Xhemalce, B.1    Kouzarides, T.2
  • 39
    • 76749104253 scopus 로고    scopus 로고
    • Dicer-independent primal RNAs trigger RNAi and heterochromatin formation
    • Halic M., Moazed D. Dicer-independent primal RNAs trigger RNAi and heterochromatin formation. Cell 2010, 140:504-516.
    • (2010) Cell , vol.140 , pp. 504-516
    • Halic, M.1    Moazed, D.2
  • 40
    • 77953183812 scopus 로고    scopus 로고
    • A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
    • Cheloufi S., Dos Santos C.O., Chong M.M.W., Hannon G.J. A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 2010, 465:584-589.
    • (2010) Nature , vol.465 , pp. 584-589
    • Cheloufi, S.1    Dos Santos, C.O.2    Chong, M.M.W.3    Hannon, G.J.4
  • 42
    • 78449246729 scopus 로고    scopus 로고
    • Continuous requirement for the Clr4 complex but not RNAi for centromeric heterochromatin assembly in fission yeast harboring a disrupted RITS complex
    • Shanker S., Job G., George O.L., Creamer K.M., Shaban A., Partridge J.F. Continuous requirement for the Clr4 complex but not RNAi for centromeric heterochromatin assembly in fission yeast harboring a disrupted RITS complex. PLoS Genet 2010, 6:e1001174.
    • (2010) PLoS Genet , vol.6
    • Shanker, S.1    Job, G.2    George, O.L.3    Creamer, K.M.4    Shaban, A.5    Partridge, J.F.6
  • 44
    • 77955502831 scopus 로고    scopus 로고
    • The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation
    • Gerace E.L., Halic M., Moazed D. The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation. Mol Cell 2010, 39:360-372.
    • (2010) Mol Cell , vol.39 , pp. 360-372
    • Gerace, E.L.1    Halic, M.2    Moazed, D.3
  • 45
    • 14844362869 scopus 로고    scopus 로고
    • RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast
    • Petrie V.J., Wuitschick J.D., Givens C.D., Kosinski A.M., Partridge J.F. RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast. Mol Cell Biol 2005, 25:2331-2346.
    • (2005) Mol Cell Biol , vol.25 , pp. 2331-2346
    • Petrie, V.J.1    Wuitschick, J.D.2    Givens, C.D.3    Kosinski, A.M.4    Partridge, J.F.5
  • 46
    • 77953809924 scopus 로고    scopus 로고
    • DNA methylation and the formation of heterochromatin in Neurospora crassa
    • Rountree M.R., Selker E.U. DNA methylation and the formation of heterochromatin in Neurospora crassa. Heredity 2010, 105:38-44.
    • (2010) Heredity , vol.105 , pp. 38-44
    • Rountree, M.R.1    Selker, E.U.2
  • 47
    • 78649694079 scopus 로고    scopus 로고
    • DNA methylation and normal chromosome behavior in neurospora depend on five components of a histone methyltransferase complex, DCDC
    • Lewis Z.A., Adhvaryu K.K., Honda S., Shiver A.L., Knip M., Sack R., Selker E.U. DNA methylation and normal chromosome behavior in neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet 2010, 6:e1001196.
    • (2010) PLoS Genet , vol.6
    • Lewis, Z.A.1    Adhvaryu, K.K.2    Honda, S.3    Shiver, A.L.4    Knip, M.5    Sack, R.6    Selker, E.U.7
  • 48
    • 77951164496 scopus 로고    scopus 로고
    • Ubiquitin ligase components Cullin4 and DDB1 are essential for DNA methylation in Neurospora crassa
    • Zhao Y., Shen Y., Yang S., Wang J., Hu Q., Wang Y., He Q. Ubiquitin ligase components Cullin4 and DDB1 are essential for DNA methylation in Neurospora crassa. J Biol Chem 2010, 285:4355-4365.
    • (2010) J Biol Chem , vol.285 , pp. 4355-4365
    • Zhao, Y.1    Shen, Y.2    Yang, S.3    Wang, J.4    Hu, Q.5    Wang, Y.6    He, Q.7
  • 50
    • 66349132858 scopus 로고    scopus 로고
    • Non-coding RNA: a bridge between small RNA and DNA
    • Kurth H.M., Mochizuki K Non-coding RNA: a bridge between small RNA and DNA. RNA Biol 2009, 6:138-140.
    • (2009) RNA Biol , vol.6 , pp. 138-140
    • Kurth, H.M.1    Mochizuki, K.2
  • 51
    • 77953961505 scopus 로고    scopus 로고
    • Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription
    • Guang S., Bochner A.F., Burkhart K.B., Burton N., Pavelec D.M., Kennedy S. Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription. Nature 2010, 465:1097-1101.
    • (2010) Nature , vol.465 , pp. 1097-1101
    • Guang, S.1    Bochner, A.F.2    Burkhart, K.B.3    Burton, N.4    Pavelec, D.M.5    Kennedy, S.6
  • 52
    • 33748368912 scopus 로고    scopus 로고
    • Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells
    • Kim D.H., Villeneuve L.M., Morris K.V., Rossi J.J. Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat Struct Mol Biol 2006, 13:793-797.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 793-797
    • Kim, D.H.1    Villeneuve, L.M.2    Morris, K.V.3    Rossi, J.J.4
  • 53
    • 4344705410 scopus 로고    scopus 로고
    • Small interfering RNA-induced transcriptional gene silencing in human cells
    • Morris K.V., Chan S.W.-L., Jacobsen S.E., Looney D.J. Small interfering RNA-induced transcriptional gene silencing in human cells. Science 2004, 305:1289-1292.
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1    Chan, S.W.-L.2    Jacobsen, S.E.3    Looney, D.J.4
  • 54
    • 23044507007 scopus 로고    scopus 로고
    • Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
    • Ting A.H., Schuebel K.E., Herman J.G., Baylin S.B. Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Genet 2005, 37:906-910.
    • (2005) Nat Genet , vol.37 , pp. 906-910
    • Ting, A.H.1    Schuebel, K.E.2    Herman, J.G.3    Baylin, S.B.4
  • 61
    • 0037298161 scopus 로고    scopus 로고
    • Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse
    • Lane N., Dean W., Erhardt S., Hajkova P., Surani A., Walter J., Reik W. Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse. Genesis 2003, 35:88-93.
    • (2003) Genesis , vol.35 , pp. 88-93
    • Lane, N.1    Dean, W.2    Erhardt, S.3    Hajkova, P.4    Surani, A.5    Walter, J.6    Reik, W.7
  • 63
    • 77957857693 scopus 로고    scopus 로고
    • A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development
    • Probst A.V., Okamoto I., Casanova M., El Marjou F., Le Baccon P., Almouzni G. A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development. Dev Cell 2010, 19:625-638.
    • (2010) Dev Cell , vol.19 , pp. 625-638
    • Probst, A.V.1    Okamoto, I.2    Casanova, M.3    El Marjou, F.4    Le Baccon, P.5    Almouzni, G.6
  • 65
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin A.A., Sachidanandam R., Girard A., Fejes-Toth K., Hannon G.J. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science 2007, 316:744-747.
    • (2007) Science , vol.316 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Fejes-Toth, K.4    Hannon, G.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.