RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast

Molecular and Cellular Biology

Volumn 25, Issue 6, 2005, Pages 2331-2346

  Petrie, Victoria J ^a   Wuitschick, Jeffrey D ^a   Givens, Cheryl D ^a   Kosinski, Aaron M ^a   Partridge, Janet F ^a  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; SMALL INTERFERING RNA;

ARTICLE; CENTROMERE; CHP1; GENE SILENCING; GENOTYPE; HETEROCHROMATIN; IMMUNOFLUORESCENCE; IMMUNOPRECIPITATION; METHYLATION; PRIORITY JOURNAL; PROTEIN INTERACTION; RNA ANALYSIS; RNA INTERFERENCE; SCHIZOSACCHAROMYCES POMBE; YEAST;

CARRIER PROTEINS; CELL CYCLE PROTEINS; CELL NUCLEUS; CENTROMERE; CHROMATIN IMMUNOPRECIPITATION; HETEROCHROMATIN; PROTEIN STRUCTURE, TERTIARY; RNA INTERFERENCE; RNA-INDUCED SILENCING COMPLEX; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TWO-HYBRID SYSTEM TECHNIQUES;

SCHIZOSACCHAROMYCES POMBE;

EID: 14844362869     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.25.6.2331-2346.2005     Document Type: Article

References (43)

1. Allshire, R. C. 1995. Elements of chromosome structure and function in fission yeast. Semin. Cell Biol. 6:55-64.
2. Allshire, R. C., E. R. Nimmo, K. Ekwall, J. P. Javerzat, and G. Cranston. 1995. Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation. Genes Dev. 9:218-233.
3. Ayoub, N., I. Goldshmidt, R. Lyakhovetsky, and A. Cohen. 2000. A fission yeast repression element cooperates with centromere-like sequences and defines a mat silent domain boundary. Genetics 156:983-994.
4. Bahler, J., J. Q. Wu, M. S. Longtine, N. G. Shah, A. McKenzie III, A. B. Steever, A. Wach, P. Philippsen, and J. R. Pringle. 1998. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14:943-951.
5. Bannister, A. J., P. Zegerman, J. F. Partridge, E. A. Miska, J. O. Thomas, R. C. Allshire, and T. Kouzarides. 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromodomain. Nature 410:120-124.
6. Basi, G., E. Scbmid, and K. Maundrell. 1993. TATA box mutations in the Schizosaccharomyces pombe nmt1 promoter affect transcription efficiency but not the transcription start point or thiamine repressibility. Gene 123:131-136.
7. Boeke, J. D., J. Trueheart, G. Natsoulis, and G. R. Fink. 1987. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154:164-175.
8. Chikashige, Y., D. Q. Ding, H. Funabiki, T. Haraguchi, S. Mashiko, M. Yanagida, and Y. Hiraoka. 1994. Telomere-led premeiotic chromosome movement in fission yeast. Science 264:270-273.
9. Dernburg, A. F., and G. H. Karpen. 2002. A chromosome RNAissance. Cell 111:159-162.
10. + is required for chromosome segregation and shows a genetic interaction with alpha-tubulin. Nucleic Acids Res. 26:4222-4229.
11. Ekwall, K., J. P. Javerzat, A. Lorentz, H. Schmidt, G. Cranston, and R. Allshire. 1995. The chromodomain protein Swi6: a key component at fission yeast centromeres. Science 269:1429-1431.
12. + disrupt the localisation of the chromodomain protein Swi6p and impair centromere function. J. Cell Sci. 109(Pt. 11):2637-2648.
13. Ekwall, K., T. Olsson, B. M. Turner, G. Cranston, and R. C. Allshire. 1997. Transient inhibition of histone deacetylation alters the structural and functional imprint at fission yeast centromeres. Cell 91:1021-1032.
14. Ekwall, K., and T. Ruusala. 1994. Mutations in rik1, clr2, clr3 and clr4 genes asymmetrically derepress the silent mating-type loci in fission yeast. Genetics 136:53-64.
15. Elgin, S. C., and S. I. Grewal. 2003. Heterochromatin: silence is golden. Curr. Biol. 13:R895-R898.
16. Funabiki, H., I. Hagan, S. Uzawa, and M. Yanagida. 1993. Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast. J. Cell Biol. 121:961-976.
17. Grewal, S. I., and A. J. Klar. 1997. A recombinationally repressed region between mat2 and mat3 loci shares homology to centromeric repeats and regulates directionality of mating-type switching in fission yeast. Genetics 146:1221-1238.
18. Hagan, I. M., and J. S. Hyams. 1988. The use of cell division cycle mutants to investigate the control of microtubule distribution in the fission yeast Schizosaccharomyces pombe. J. Cell Sci. 89(Pt. 3):343-357.
19. Hall, I. M., K. Noma, and S. I. Grewal. 2003. RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast. Proc. Natl. Acad. Sci. USA 100:193-198.
20. Hall, I. M., G. D. Shankaranarayana, K. Noma, N. Ayoub, A. Cohen, and S. I. Grewal. 2002. Establishment and maintenance of a heterochromatin domain. Science 297:2232-2237.
21. Jia, S., K. Noma, and S. I. Grewal. 2004. RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins. Science 304:1971-1976.
22. Kim, H. S., E. S. Choi, J. A. Shin, V. K. Jang, and S. D. Park. 2004. Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6. J. Biol. Chem. 279:42850-42859.
23. Kniola, B., E. O'Toole, J. R. McIntosh, B. Mellone, R. Allshire, S. Mengarelli, K. Hultenby, and K. Ekwall. 2001. The domain structure of centromeres is conserved from fission yeast to humans. Mol. Biol. Cell 12:2767-2775.
24. Meehan, R. R., C. F. Kao, and S. Pennings. 2003. HP1 binding to native chromatin in vitro is determined by the hinge region and not by the chromodomain. EMBO J. 22:3164-3174.
25. Mellone, B. G., L. Ball, N. Suka, M. R. Grunstein, J. F. Partridge, and R. C. Allshire. 2003. Centromere silencing and function in fission yeast is governed by the amino terminus of histone H3. Curr. Biol. 13:1748-1757.
26. Moreno, S., A. Klar, and P. Nurse. 1991. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194:795-823.
27. Noma, K. I., T. Sugiyama, H. Cam, A. Verdel, M. Zofall, S. Jia, D. Moazed, and S. I. Grewal. 2004. RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing. Nat. Genet. 36:1174-1180.
28. Partridge, J. F., B. Borgstrom, and R. C. Allshire. 2000. Distinct protein interaction domains and protein spreading in a complex centromere. Genes Dev. 14:783-791.
29. Partridge, J. F., K. S. Scott, A. J. Bannister, T. Kouzarides, and R. C. Allshire. 2002. cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site. Curr. Biol. 12:1652-1660.
30. Provost, P., R. A. Silverstein, D. Dishart, J. Walfridsson, I. Djupedal, B. Kniola, A. Wright, B. Samuelsson, O. Radmark, and K. Ekwall. 2002. Dicer is required for chromosome segregation and gene silencing in fission yeast cells. Proc. Natl. Acad. Sci. USA 99:16648-16653.
31. Reinhart, B. J., and D. P. Bartel. 2002. Small RNAs correspond to centromere heterochromatic repeats. Science 297:1831.
32. Sadaie, M., T. Iida, T. Urano, and J. Nakayama. 2004. A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast. EMBO J. 23:3825-3835.
33. Sadaie, M., T. Naito, and F. Ishikawa. 2003. Stable inheritance of telomere chromatin structure and function in the absence of telomeric repeats. Genes Dev. 17:2271-2282.
34. Sigova, A., N. Rhind, and P. D. Zamore. 2004. A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe. Genes Dev. 18:2359-2367.
35. Takahashi, K., E. S. Chen, and M. Yanagida. 2000. Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast. Science 288:2215-2219.
36. Tasto, J. J., R. H. Carnahan, W. H. McDonald, and K. L. Gould. 2001. Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe. Yeast 18:657-662.
37. Thon, G., K. P. Bjerling, and I. S. Nielsen. 1999. Localization and properties of a silencing element near the mat3-M mating-type cassette of Schizosaccharomyces pombe. Genetics 151:945-963.
38. Thon, G., and J. Verhein-Hansen. 2000. Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations. Genetics 155:551-568.
39. Verdel, A., S. Jia, S. Gerber, T. Sugiyama, S. Gygi, S. I. Grewal, and D. Moazed. 2004. RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303:672-676.
40. Volpe, T., V. Schramke, G. L. Hamilton, S. A. White, G. Teng, R. A. Martienssen, and R. C. Allshire. 2003. RNA interference is required for normal centromere function in fission yeast. Chromosome Res. 11:137-146.
41. Volpe, T. A., C. Kidner, I. M. Hall, G. Teng, S. I. Grewal, and R. A. Martienssen. 2002. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297:1833-1837.
42. Woods, A., T. Sherwin, R. Sasse, T. H. MacRae, A. J. Baines, and K. Gull. 1989. Definition of individual components within the cytoskeleton of Trypanosoma brucei by a library of monoclonal antibodies. J. Cell Sci. 93(Pt. 3):491-500.
43. Yoshida, M., M. Kijima, M. Akita, and T. Beppu. 1990. Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J. Biol. Chem. 265:17174-17179.