Development and application of co-culture for ethanol production by co-fermentation of glucose and xylose: A systematic review

Journal of Industrial Microbiology and Biotechnology

Volumn 38, Issue 5, 2011, Pages 581-597

  Chen, Yanli ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Co culture; Co fermentation; Ethanol production; Glucose; Xylose

Indexed keywords

ALCOHOL; GLUCOSE; LIGNOCELLULOSE; XYLOSE;

ALCOHOL PRODUCTION; BIOMASS; COCULTURE; FERMENTATION; NONHUMAN; PICHIA STIPITIS; REVIEW; SACCHAROMYCES CEREVISIAE; ZYMOMONAS MOBILIS;

COCULTURE TECHNIQUES; ETHANOL; FERMENTATION; GLUCOSE; INDUSTRIAL MICROBIOLOGY; MICROBIAL INTERACTIONS; PICHIA; SACCHAROMYCES CEREVISIAE; XYLOSE; ZYMOMONAS;

PICHIA STIPITIS; SACCHAROMYCES CEREVISIAE; ZYMOMONAS MOBILIS;

EID: 79956076689     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-010-0894-3     Document Type: Review

References (100)

1. Abate C, Callieri D, Rodriguez E, Garro O (1996) Ethanol production by a mixed culture of flocculent strains of Zymomonas mobilis and Saccharomyces sp. Appl Microbiol Biotechnol 45:580-583 (Pubitemid 26226630)
2. Abbi M, Kuhad RC, Singh A (1996) Bioconversion of pentose sugars to ethanol by free and immobilized cells of Candida shehatae (NCL-3501): fermentation behavior. Process Biochem 31(6):555-560 (Pubitemid 126649630)
3. Alterthum F, Ingram LO (1989) Efficient ethanol production from glucose, lactose, and xylose by recombinant Escherichia coli. Appl Environ Microbiol 55:1943-1948
4. Amartey S, Jeffries T (1996) An improvement in Pichia stipitis fermentation of acid-hydrolysed hemicelllulose achieved by overliming (calcium hydroxide treatment) and strain adaptation. World J Microbiol Biotechnol 12(3):281-283 (Pubitemid 126578619)
5. Amore R, Kotter P, Kuster C, Ciriacy M, Hollenberg CP (1991) Cloning and expression in Saccharomyces cerevisiae of the NAD(P)H-dependent xylose reductase-encoding gene (XYL1) from the xylose-assimilating yeast Pichia stipitis. Gene 109:89-97
6. Bader J, Mast-Gerlach E, Popović MK, Bajpai R, Stahl U (2010) Relevance of microbial coculture fermentations in biotechnology. J Appl Microbiol 109:371-387
7. Beck MJ, Johnson RD, Baker CS (1990) Ethanol production from glucose/xylose mixes by incorporating microbes in selected fermentation schemes. Appl Biochem Biotechnol 24-25:415-424 (Pubitemid 20275175)
8. Birol G, Doruker P, Kirdar B, Önsan Zİ, Ülgen K (1998) Mathematical description of ethanol fermentation by immobilized Saccharomyces cerevisiae. Process Biochem 33:763-771 (Pubitemid 28520479)
9. Brooks TA, Ingram LO (1995) Conversion of mixed waste office paper to ethanol by genetically engineered Klebsiella oxytoca strain P2. Biotechnol Prog 11:619-625 (Pubitemid 3011155)
10. Bothast RJ, Nichols NN, Dien BS (1999) Fermentations with new recombinant organisms. Biotechnol Prog 15:867-875 (Pubitemid 29475625)
11. Cardona CA, Sánchez ÓJ (2007) Fuel ethanol production: process design trends and integration opportunities. Bioresour Technol 98:2415-2457 (Pubitemid 46413752)
12. Chandrakant P, Bisaria VS (1998) Simultaneous bioconversion of cellulose and hemicelluloses to ethanol. Crit Rev Biotechnol 18(4):295-331 (Pubitemid 29021423)
13. Cho BK, Charusanti P, Herrgård MJ, Palsson BO (2007) Microbial regulatory and metabolic networks. Curr Opin Biotechnol 18:360-364 (Pubitemid 47385182)
14. Chu BCH, Lee H (2007) Genetic improvement of Saccharomyces cerevisiae for xylose fermentation. Biotechnol Adv 25:425-441 (Pubitemid 47043375)
15. Deanda K, Zhang M, Eddy C, Picataggio S (1996) Development of an arabinose-fermenting Zymomonas mobilis strain by metabolic pathway engineering. Appl Environ Microbiol 62:4465-4470 (Pubitemid 26399442)
16. De Bari I, Cuna D, Nanna F, Braccio G (2004) Ethanol production in immobilized cell bioreactors from mixed sugar syrups and enzymatic hydrolysates of steam-exploded biomass. Appl Biochem Biotechnol 114:539-557 (Pubitemid 40063631)
17. Delgenes JP, Escare MC, Laplace JM, Moletta R, Navarro JM (1998) Biological production of industrial chemicals, i.e. xylitol and ethanol, from lignocelluloses by controlled mixed culture systems. Ind Crops Prod 1:101-111 (Pubitemid 28051932)
18. Delgenes JP, Laplace JM, Moletta R, Navarro JM (1996) Comparative study of separated fermentations and cofermentation process to produce ethanol from hardwood derived hydrolysates. Biomass Bioenergy 11(4):353-360 (Pubitemid 27100816)
19. Delgenes JP, Moletta R, Navarro JM (1988) The ethanol tolerance of Pichia stipitis Y7124 grown on a D-xylose D-glucose and L-arabinose mixture. J Ferment Technol 66:417-422
20. Department of Energy (2005) From biomass to biofuels: a roadmap to the energy future, based on a workshop, Rockville, 7-9 Dec
21. Dien BS, Cotta MA, Jeffries TW (2003) Bacteria engineered for fuel ethanol production: current status. Appl Microbiol Biotechnol 63:258-266 (Pubitemid 38139281)
22. Doran JB, Aldrich HC, Ingram LO (1994) Saccharification and fermentation of sugar-cane bagasse by Klebsiella oxytoca P2 containing chromosomally integrated genes encoding the Zymomonas mobilis ethanol pathway. Biotechnol Bioeng 44:240-247 (Pubitemid 24212210)
23. Dumsday GJ, Jones K, Stanley GA, Pamment NB (1997) Recombinant organisms for ethanol production from hemicellulosic hydrolyzates - a review of recent progress. Australas Biotechnol 7(4):285-295 (Pubitemid 28017112)
24. Eliasson A, Christensson C, Wahlbom CF, Hahn-Hägerdal B (2000) Anaerobic xylose fermentation by recombinant Saccharomyces cerevisiae carrying XYL1, XYL2 and XKS1 in mineral medium chemostat cultures. Appl Environ Microbiol 66:3381-3386
25. Förster J, Famili I, Fu P, Palsson BO, Nielsen J (2003) Genomescale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 13:244-253 (Pubitemid 36581837)
26. Fu N, Peiris P, Markham J et al (2009) A novel co-culture process with Zymomonas mobilis and Pichia stipitis for efficient ethanol production on glucose/xylose mixtures. Enzyme Microb Technol 45(3):210-217
27. Fu N, Peiris P (2008) Co-fermentation of a mixture of glucose and xylose to ethanol by Zymomonas mobilis and Pachysolen tannophilus. World J Microbiol Biotechnol 24(7):1091-1097 (Pubitemid 351782220)
28. Golias H, Dumsday GJ, Stanley GA, Pamment NB (2002) Evaluation of a recombinant Klebsiella oxytoca strain for ethanol production from cellulose by simultaneous saccharification and fermentation: comparison with native cellobiose-utilising yeast strains and performance in co-culture with thermotolerant yeast and Zymomonas mobilis. J Biotechnol 96:155-168 (Pubitemid 34563242)
29. Gong CS, Cao NJ, Du J, Tsao GT (1999) Ethanol production from renewable resources. Adv Biochem Eng Biotechnol 65:207-241
30. Gray KA, Zhao L, Emptage M (2006) Bioethanol. Curr Opin Chem Biol 10:141-146
31. Grootjen DRJ, Meijlink LHHM, van der Lans RGJM, KChAM Luyben (1990) Cofermentation of glucose and xylose with immobilized Pichia stipitis and Saccharomyces cerevisiae. Enzyme Microb Technol 12:860-864 (Pubitemid 20359614)
32. Grootjen DRJ, van der Lans RGJM, KChAM Luyben (1990) Effects of the aeration rate on the fermentation of glucose and xylose by Pichia stipitis CBS 5773. Enzyme Microb Technol 12:20-23 (Pubitemid 20082424)
33. Grootjen DRJ, Jansen ML, van der Lans RGJM, Luyben KCAM (1991) Reactors in series for the complete conversion of glucose/xylose mixtures by Pichia stipitis and Saccharomyces cerevisiae. Enzyme Microb Technol 13:828-833
34. Grootjen DRJ, Meijlink LHHM, Vleesenbeek R, van der Lans RGJM, Luyben KChAM (1991) Cofermentation of glucose and xylose with immobilized Pichia stipitis in combination with Saccharomyces cerevisiae. Enzyme Microb Technol 13:530-536
35. Grootjen DRJ, van der Lans RGJM, Luyben KChAM (1991) Conversion of glucose/xylose mixtures by Pichia stipitis under oxygen-limited conditions. Enzyme Microb Technol 13:648-654
36. Grootjen DRJ, Windemeijer MGA, van der Lans RGJM, Luyben KChAM (1990) The use of a coulter counter to investigate a mixed culture of Pichia stipitis and Saccharomyces cerevisiae. Biotechnol Tech 4(6):403-408
37. Hallborn J, Walfridsson M, Airaksinen U, Ojamo H, Hahn-Hägerdal B, Penttila M et al (1991) Xylitol production by recombinant Saccharomyces cerevisiae. Biotechnology 9:1090-1095
38. Harish Kumar Reddy Y, Srijana M, Madhusudhan Reddy D, Reddy G (2010) Coculture fermentation of banana agro-waste to ethanol by cellulolytic thermophilic Clostridium thermocellum CT2. Afr J Biotechnol 9(13):1926-1934
39. Ho NW, Chen Z, Brainard AP (1998) Genetically engineered Saccharomyces yeast capable of effective co-fermentation of glucose and xylose. Appl Environ Microbiol 64:1852-1859 (Pubitemid 28234795)
40. Hodge DB, Karim MN (2002) Modeling and advanced control of recombinant Zymomonas mobilis fed-batch fermentation. Biotechnol Prog 18:572-579 (Pubitemid 34629719)
41. Ingram LO, Alterthum F, Conway T, Ohta K (1991) Ethanol production by Escherichia coli strains co-expressing Zymomonas pdc and adh genes. US Patent No. 5, 000, 000
42. Ingram LO, Conway T (1988) Expression of different levels of ethanologenic enzymes from Zymomonas mobilis in recombinant strains of Escherichia coli. Appl Environ Microbiol 54:397-404
43. Ingram LO, Conway T, Clark DP, Sewell GW, Preston JF (1987) Genetic engineering of ethanol production in Escherichia coli. Appl Environ Microbiol 53:2420-2425
44. Ingram LO, Gomez PF, Lai X, Moniruzzaman M, Wood BE, Yomano LP, York SW (1997) Metabolic engineering of bacteria for ethanol production. Biotechnol Bioeng 58:204-214
45. Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A, Schmutz J, Lindquist E, Dehal P, Shapiro H, Jin YS, Passoth V, Richardson PM (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25(3):319-326 (Pubitemid 46398771)
46. Jeffries TW, Jin YS (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Microbiol Biotechnol 63:495-509 (Pubitemid 38232698)
47. Jeffries TW (2006) Engineering yeasts for xylose metabolism. Curr Opin Biotechnol 17:320-326
48. Jin YS, Jeffries TW (2004) Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng 6:229-238
49. Joachimsthal EL, Rogers PL (2000) Characterization of a high productivity recombinant strain of Zymomonas mobilis for ethanol production from glucose/xylose mixtures. Appl Biochem Biotechnol 84(6):343-356 (Pubitemid 30349473)
50. Knauf M, Moniruzzaman M (2004) Lignocellulosic biomass processing: a perspective. Int Sugar J 106:147-150
51. Kordowska-Wiater M, Targoński Z (2001) Ethanol production on the media containing glucose and xylose by coculture of Pichia Stipitis CCY39501 and respiratory deficient mutant of Saccharomyces cerevisiae V30. Electr J Pol Agric Univ Food Sci Technol 4(2):15-28
52. Kordowska-Wiater M, Targoński Z (2002) Ethanol fermentation on glucose/xylose mixture by co-cultivation of restricted glucose catabolite repressed mutants of Pichia stipitis with respiratory deficient mutants of Saccharomyces cerevisiae. Acta Microbiol Pol 51:345-352 (Pubitemid 36014678)
53. Krishnan MS, Ho NWY, Tsao GT (1999) Fermentation kinetics of ethanol production from glucose and xylose by recombinant Saccharomyces 1400 (pLNH33). Appl Biochem Biotehcnol 77-79:373-388 (Pubitemid 29300471)
54. Kumar R, Singh S, Singh OV (2008) Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35:377-391
55. Kuyper M, Hartog MMP, Toirkens MJ, Almering MJH, Winkler AA, Van Dijken JP, Pronk JT (2005) Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation. FEMS Yeast Res 5:399-409 (Pubitemid 40192529)
56. Laplace JM, Delgenes JP, Moletta R (1992) Alcoholic glucose and xylose fermentations by the coculture process: compatibility and typing of associated strains. Can J Microbiol 38:654-658
57. Laplace JM, Delgenes JP, Moletta R, Navarro JM (1993) Effects of culture conditions on the co-fermentation of a glucose and xylose mixture to ethanol by a mutant of Saccharomyces diastaticus associated with Pichia stipitis. Appl Microbiol Biotechnol 39:760-763 (Pubitemid 23246644)
58. Laplace JM, Delgenes JP, Moletta R, Navarro JM (1993) Cofermentation of glucose and xylose to ethanol by a respiratorydeficient mutant of Saccharomyces cerevisiae co-cultivated with a xylose-fermenting yeast. J Ferment Bioeng 75:207-212 (Pubitemid 23116696)
59. Laplace JM, Delgenes JP, Moletta R, Navarro JM (1993) Ethanol production from glucose and xylose by separated and coculture process using high cell density systems. Process Biochem 28:519-525
60. Laplace JM, Delgenes JP, Moletta R, Navarro JM (1991) Combined alcoholic fermentation of D-xylose and D-glucose by four selected microbial strains: process considerations in relation to ethanol tolerance. Biotechnol Lett 13(6):445-450
61. Latif F, Rajoka MI (2001) Production of ethanol and xylitol from corn cobs by yeasts. Bioresour Technol 77(1):57-63
62. Lebeau T, Jouenne T, Junter GA (1997) Simultaneous fermentation of glucose and xylose by pure and mixed cultures of Saccharomyces cerevisiae and Candida shehatae immobilized in a two-chambered bioreactor. Enzyme Microb Technol 21:265-272 (Pubitemid 27448293)
63. Lee J (1997) Biological conversion of lignocellulosic biomass to ethanol. J Biotechnol 56:1-24
64. Lee YS, Lee WG, Chang YK, Chang HN (1995) Modelling of ethanol production by Saccharomyces cerevisiae from a glucose and maltose mixture. Biotechnol Lett 17:791-796
65. Lee WC, Huang CT (2000) Modeling of ethanol fermentation using Zymomonas mobilis ATCC 10988 grown on the media containing glucose and fructose. Biochem Eng J 4:217-227
66. Leksawasdi N, Joachimsthal EL, Rogers PL (2001) Mathematical modeling of ethanol production from glucose/xylose mixtures by recombinant Zymomonas mobilis. Biotechnol Lett 23:1087-1093 (Pubitemid 32734075)
67. Lin Y, Tanaka S (2006) Ethanol fermentation from biomass resources: current state and prospects. Appl Environ Microbiol 69:627-642 (Pubitemid 43136522)
68. Maki M, Leung KT, Qin W (2009) The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass. Int J Biol Sci 5:500-516
69. Martin C, Marcet M, Almazan O, Jonsson LJ (2007) Adaptation of a recombinant xylose-utilizing Saccharomyces cerevisiae strain to a sugarcane bagasse hydrolysate with high content of fermentation inhibitors. Bioresour Technol 98(9):1767-1777
70. Mielenz JR (2001) Ethanol production from biomass: technology and commercialization status. Curr Opin Microbiol 4:324-329
71. Ng TK, Ben-Bassat A, Zeikus JG (1981) Ethanol production by thermophilic bacteria: fermentation of cellulosic substrates by cocultures of Clostridium thermocellum and Clostridium thermohydrosulfuricum. Appl Environ Microbiol 41(6):1337-1343 (Pubitemid 11041072)
72. Ohta K, Beall DS, Mejia JP, Shanmugam KT, Ingram LO (1991) Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl Environ Microbiol 57:893-900
73. Ohta K, Beall DS, Mejia JP, Shanmugam KT, Ingram LO (1991) Metabolic engineering of Klebsiella oxytoca M5A1 for ethanol production from xylose and glucose. Appl Environ Microbiol 57:2810-2815
74. Qian M, Tian S, Li X, Zhang J, Pan Y, Yang X (2006) Ethanol production from dilute-acid softwood hydrolysate by co-culture. Appl Biochem Biotechnol 134:273-283 (Pubitemid 44389279)
75. Okuda N, Ninomiya K, Katakura Y, Shioya S (2008) Strategies for reducing supplemental medium cost in bioethanol production from waste house wood hydrolysate by ethanologenic Escherichia coli: inoculum size increase and coculture with Saccharomyces cerevisiae. J Biosci Bioeng 105(2):90-96 (Pubitemid 351380988)
76. Olsson L, Hahn-Hägerdal B (1995) Kinetics of ethanol production by recombinant Escherichia coli KO11. Biotechnol Bioeng 45:356-365
77. Patle S, Lal B (2007) Ethanol production from hydrolysed agricultural wastes using mixed culture of Zymomonas mobilis and Candida tropicalis. Biotechnol Lett 29(12):1839-1843 (Pubitemid 350043625)
78. Potera C (2006) Process with biofuels will depend on, drive microbiology research. Microbe 1:317-322
79. Pramanik J, Keasling JD (1997) Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol Bioeng 56:398-421 (Pubitemid 27468936)
80. Reed LJ, Palsson BØ (2003) Thirteen years of building constraint- based in silicon models of Escherichia coli. J Bacteriol 185(9):2692-2699
81. Rouhollah H, Iraj N, Giti E, Sorah A (2007) Mixed sugar fermentation by Pichia stipitis, Saccharomyces cerevisiae, and an isolated xylose-fermenting Kluyveromyces marxianus and their cocultures. Afr J Biotechnol 6(9):1110-1114 (Pubitemid 46744484)
82. Sánchez S, Bravo V, Castro E, Moya AJ, Camacho F (2002) The fermentation of mixtures of D-glucose and D-xylose by Candida shehatae, Pichia stipitis or Pachysolen tannophilus to produce ethanol. J Chem Technol Biotechnol 77:641-648 (Pubitemid 34516378)
83. Service RF (2007) Cellulosic ethanol: biofuel researchers prepare to reap a new harvest. Science 315:1488-1491
84. Skoog K, Hahn-Hägerdal B (1990) Effect of oxygenation on xylose fermentation by Pichia stipitis. Appl Environ Microbiol 56:3389-3394 (Pubitemid 20380714)
85. Stephanopoulos G (2007) Challenges in engineering microbes for biofuels production. Science 315:801-804
86. Szambelan K, Nowak J, Czarnecki Z (2004) Use of Zymomonas mobilis and Saccharomyces cerevisiae mixed with Kluyveromyces fragilis for improved ethanol production from Jerusalem artichoke tubers. Biotechnol Lett 26:845-848 (Pubitemid 38982866)
87. Taherzadeh MJ, Karimi K (2007) Acid-based hydrolysis processes for ethanol from lignocellulosic materials: a review. BioResources 2(3):472-499
88. Takuma S, Nakashima N, Tantirungkij M, Kinoshita S, Okada H, Seki T et al (1991) Isolation of xylose reductase gene of Pichia stipitis and its expression in Saccharomyces cerevisiae. Appl Biochem Biotechnol 28-29:327-340
89. Taniguchi M, Itaya T, Tohma T, Fujii M (1997) Ethanol production from a mixture of glucose and xylose by co-culture of Pichia stipitis and a respiratory-deficient mutant of Saccharomyces cerevisiae. J Ferment Bioeng 83:364-370 (Pubitemid 27251373)
90. Taniguchi M, Itaya T, Tohma T, Fujii M (1997) Ethanol production from a mixture of glucose and xylose by a novel coculture system with two fermentors and two microfiltration modules. J Ferment Bioeng 84(1):59-64 (Pubitemid 27392187)
91. Taniguchi M, Tanaka T (2004) Clarification of interactions among microorganism and development of co-culture systems for production of useful substances. Adv Biochem Eng Biotechnol 90:35-62
92. Thatipamala R, Rohani S, Hill GA (1992) Effects of high product and substrate inhibitions on the kinetics and biomass and product yields during ethanol batch fermentation. Biotechnol Bioeng 40:289-297
93. Varma A, Palsson BØ (1993) Metabolic capabilities of Escherichia coli. I. Synthesis of biosynthetic precursors and cofactors. J Theor Biol 165:477-502 (Pubitemid 24044950)
94. Varma A, Palsson BØ (1993) Metabolic capabilities of Escherichia coli. II. Optimal growth patterns. J Theor Biol 165:503-522
95. Varma A, Palsson BØ (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild type Escherichia coli W3110. Appl Environ Microbiol 60:3724-3731 (Pubitemid 24298868)
96. Wood BE, Ingram LO (1992) Ethanol production from cellobiose, amorphous cellulose, and crystalline cellulose by recombinant Klebsiella oxytoca containing chromosomally integrated Zymomonas mobilis genes for ethanol production and plasmids expressing thermostable cellulose from Clostridium thermocellum. Appl Environ Microbiol 58:2103-2110
97. Zaldivar J, Nielsen J, Olsson L (2001) Fuel ethanol production from lignocelluloses: a challenge for metabolic engineering and process integration. Appl Microbiol Biotechnol 56:17-34 (Pubitemid 32663881)
98. Zhang M, Eddy C, Deanda K, Finkelstein M, Picataggio S (1995) Metabolic engineering of a pentose metabolism pathway in ethanologenic Zymomonas mobilis. Science 267:240-243
99. Zhou S, Davis FC, Ingram LO (2001) Gene integration and expression and extracellular secretion of Erwinia chrysanthemi endoglucanase CelY (celY) and CelZ (celZ) in ethanologenic Klebsiella oxytoca P2. Appl Environ Microbiol 67:6-14 (Pubitemid 32044396)
100. Zhou S, Ingram LO (1999) Engineering endoglucanase-secreting strains of ethanologenic Klebsiella oxytoca P2. J Ind Microbiol Biotechnol 22:600-607 (Pubitemid 29381200)