-
1
-
-
0025895183
-
Toward a science of metabolic engineering
-
Bailey J.E. Toward a science of metabolic engineering. Science. 252:1991;1668-1675
-
(1991)
Science
, vol.252
, pp. 1668-1675
-
-
Bailey, J.E.1
-
2
-
-
0003717374
-
-
W.H. Freeman and Company, New York.
-
Berg, J.M., Stryer, L., Tymoczko, J.L., 2002. Biochemistry, 5th Edition. W.H. Freeman and Company, New York.
-
(2002)
Biochemistry, 5th Edition
-
-
Berg, J.M.1
Stryer, L.2
Tymoczko, J.L.3
-
3
-
-
0027352238
-
Cellular and metabolic engineering: An overview
-
Cameron D.C., Tong I.T. Cellular and metabolic engineering. an overview Appl. Biochem. Biotechnol. 38:1993;105-140
-
(1993)
Appl. Biochem. Biotechnol.
, vol.38
, pp. 105-140
-
-
Cameron, D.C.1
Tong, I.T.2
-
4
-
-
0032999856
-
Delta-integration of endo/exo-glucanase and beta-glucosidase genes into the yeast chromosomes for direct conversion of cellulose to ethanol
-
Cho K.M., Yoo Y.J., Kang H.S. Delta-integration of endo/exo-glucanase and beta-glucosidase genes into the yeast chromosomes for direct conversion of cellulose to ethanol. Enzyme Microb. Technol. 25:1999;23-30
-
(1999)
Enzyme Microb. Technol.
, vol.25
, pp. 23-30
-
-
Cho, K.M.1
Yoo, Y.J.2
Kang, H.S.3
-
7
-
-
0031194875
-
Inverse flux analysis for reduction of acetate excretion in E. coli
-
Delgado J., Liao J.C. Inverse flux analysis for reduction of acetate excretion in E. coli. Biotechnol. Prog. 13:1997;361-367
-
(1997)
Biotechnol. Prog.
, vol.13
, pp. 361-367
-
-
Delgado, J.1
Liao, J.C.2
-
8
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
Edwards J.S., Palsson B.O. Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem. 274:1999;17410-17416
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
9
-
-
0034625143
-
The E. coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
Edwards J.S., Palsson B.O. The E. coli MG1655 in silico metabolic genotype. its definition, characteristics, and capabilities Proc. Natl. Acad. Sci. USA. 97:2000;5528-5533
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
10
-
-
0035125986
-
In silico predictions of E. coli metabolic capabilities are consistent with experimental data
-
Edwards J.S., Ibarra R.U., Palsson B.O. In silico predictions of E. coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol. 19:2001;125-130
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
11
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster J., Famili I., Fu P., Palsson B.O., Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome. Res. 13:2003;244-253
-
(2003)
Genome. Res.
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
12
-
-
0037415332
-
The Streptomyces rubiginosus xylose isomerase is misfolded when expressed in Saccharomyces cerevisiae
-
Gardonyi M., Hahn-Hägerdal B. The Streptomyces rubiginosus xylose isomerase is misfolded when expressed in Saccharomyces cerevisiae. Enzyme Microb. Technol. 32:2003;252-259
-
(2003)
Enzyme Microb. Technol.
, vol.32
, pp. 252-259
-
-
Gardonyi, M.1
Hahn-Hägerdal, B.2
-
13
-
-
0025159475
-
Effects of the aeration rate on the fermentation of glucose and xylose by Pichia stipitis CBS-5773
-
Grootjen D.R.J., Vanderlans R., Luyben K. Effects of the aeration rate on the fermentation of glucose and xylose by Pichia stipitis CBS-5773. Enzyme Microb. Technol. 12:1990;20-23
-
(1990)
Enzyme Microb. Technol.
, vol.12
, pp. 20-23
-
-
Grootjen, D.R.J.1
Vanderlans, R.2
Luyben, K.3
-
14
-
-
0031832290
-
Genetically engineered Sacccharomyces yeast capable of effective cofermentation of glucose and xylose
-
Ho N.W.Y., Chen Z.D., Brainard A.P. Genetically engineered Sacccharomyces yeast capable of effective cofermentation of glucose and xylose. Appl. Environ. Microbiol. 64:1998;1852-1859
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1852-1859
-
-
Ho, N.W.Y.1
Chen, Z.D.2
Brainard, A.P.3
-
15
-
-
0037079023
-
E. coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
Ibarra R.U., Edwards J.S., Palsson B.O. E. coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature. 420:2002;186-189
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.U.1
Edwards, J.S.2
Palsson, B.O.3
-
16
-
-
0020565064
-
Effect of nitrate on fermentation on xylsoe and glucose by Pachysolen Tannophilus
-
Jeffries T.W. Effect of nitrate on fermentation on xylsoe and glucose by Pachysolen Tannophilus. Bio/Technology. 1:1983;503-506
-
(1983)
Bio/Technology
, vol.1
, pp. 503-506
-
-
Jeffries, T.W.1
-
17
-
-
0021887676
-
Emerging technology for fermenting D-xylose
-
Jeffries T.W. Emerging technology for fermenting D-xylose. Trends Biotechnol. 3:1985;208-212
-
(1985)
Trends Biotechnol.
, vol.3
, pp. 208-212
-
-
Jeffries, T.W.1
-
18
-
-
1242283435
-
-
Thesis (Ph D), University of Wisconsin, Madison, WI
-
Jin, Y.S., 2002. Metabolic engineering of xylose fermentation in Saccharomyces cerevisiae, Thesis (Ph D), University of Wisconsin, Madison, WI, pp. 236.
-
(2002)
Metabolic Engineering of Xylose Fermentation in Saccharomyces Cerevisiae
, pp. 236
-
-
Jin, Y.S.1
-
19
-
-
0038748280
-
Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae
-
Jin Y.S., Jeffries T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Appl. Biochem. Biotech. 105-108:2002;277-285
-
(2002)
Appl. Biochem. Biotech.
, vol.105-108
, pp. 277-285
-
-
Jin, Y.S.1
Jeffries, T.W.2
-
20
-
-
0033826838
-
Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis
-
Jin Y.S., Lee T.H., Choi Y.D., Ryu Y.W., Seo J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. J. Microbiol. Biotechnol. 10:2000;564-567
-
(2000)
J. Microbiol. Biotechnol.
, vol.10
, pp. 564-567
-
-
Jin, Y.S.1
Lee, T.H.2
Choi, Y.D.3
Ryu, Y.W.4
Seo, J.H.5
-
21
-
-
0036189820
-
Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function
-
Jin Y.S., Jones S., Shi N.Q., Jeffries T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl. Environ. Microbiol. 68:2002;1232-1239
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1232-1239
-
-
Jin, Y.S.1
Jones, S.2
Shi, N.Q.3
Jeffries, T.W.4
-
22
-
-
0037228901
-
Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity
-
Jin Y.S., Ni H., Laplaza J.M., Jeffries T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Appl. Environ. Microbiol. 69:2003;495-503
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 495-503
-
-
Jin, Y.S.1
Ni, H.2
Laplaza, J.M.3
Jeffries, T.W.4
-
23
-
-
0025633861
-
Isolation and characterization of the Pichia stipitis xylitol dehydrogenase gene, XYL2, and construction of a xylose-utilizing Saccharomyces cerevisiae transformant
-
Kotter P., Amore R., Hollenberg C.P., Ciriacy M. Isolation and characterization of the Pichia stipitis xylitol dehydrogenase gene, XYL2, and construction of a xylose-utilizing Saccharomyces cerevisiae transformant. Curr. Genet. 18:1990;493-500
-
(1990)
Curr. Genet.
, vol.18
, pp. 493-500
-
-
Kotter, P.1
Amore, R.2
Hollenberg, C.P.3
Ciriacy, M.4
-
24
-
-
12144288423
-
High-level functional expression of a fungal xylose isomerase: The key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae?
-
Kuyper M., Harhangi H.R., Stave A.K., Winkler A.A., Jetten M.S., de Laat W.T., den Ridder J.J., Op den Camp H.J., van Dijken J.P., Pronk J.T. High-level functional expression of a fungal xylose isomerase. the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae? FEMS Yeast Res. 4:2003;69-78
-
(2003)
FEMS Yeast Res.
, vol.4
, pp. 69-78
-
-
Kuyper, M.1
Harhangi, H.R.2
Stave, A.K.3
Winkler, A.A.4
Jetten, M.S.5
De Laat, W.T.6
Den Ridder, J.J.7
Op Den Camp, H.J.8
Van Dijken, J.P.9
Pronk, J.T.10
-
25
-
-
0034914935
-
Estimation of theoretical yield for ethanol production from D-xylose by recombinant Saccharomyces cerevisiae using metabolic pathway synthesis algorithm
-
Lee T.H., Kim M.Y., Ryu Y.W., Seo J.H. Estimation of theoretical yield for ethanol production from D-xylose by recombinant Saccharomyces cerevisiae using metabolic pathway synthesis algorithm. J. Microbiol. Biotechnol. 11:2001;384-388
-
(2001)
J. Microbiol. Biotechnol.
, vol.11
, pp. 384-388
-
-
Lee, T.H.1
Kim, M.Y.2
Ryu, Y.W.3
Seo, J.H.4
-
26
-
-
0031885474
-
Cloning and disruption of the beta-isopropylmalate dehydrogenase gene (LEU2) of Pichia stipitis with URA3 and recovery of the double auxotroph
-
Lu P., Davis B.P., Hendrick J., Jeffries T.W. Cloning and disruption of the beta-isopropylmalate dehydrogenase gene (LEU2) of Pichia stipitis with URA3 and recovery of the double auxotroph. Appl. Microbiol. Biotechnol. 49:1998;141-146
-
(1998)
Appl. Microbiol. Biotechnol.
, vol.49
, pp. 141-146
-
-
Lu, P.1
Davis, B.P.2
Hendrick, J.3
Jeffries, T.W.4
-
27
-
-
0025405421
-
Simple constrained optimization view of acetate overflow in E. coli
-
Majewski R.A., Domack M.M. Simple constrained optimization view of acetate overflow in E. coli. Biotechnol. Bioeng. 35:1990;732-738
-
(1990)
Biotechnol. Bioeng.
, vol.35
, pp. 732-738
-
-
Majewski, R.A.1
Domack, M.M.2
-
28
-
-
3242656688
-
The properties and composition of yeast nucleic acids
-
J.S. Harrison. New York: Academic Press
-
Mounolou J.C. The properties and composition of yeast nucleic acids. Harrison J.S. The Yeasts. 1975;309-334 Academic Press, New York
-
(1975)
The Yeasts
, pp. 309-334
-
-
Mounolou, J.C.1
-
29
-
-
0003742927
-
-
Sinauer Associates, Sunderland, MA.
-
Neidhardt, F.C., Ingraham, J.L., Schaechter, M., 1990. Physiology of the Bacterial Cell. Sinauer Associates, Sunderland, MA.
-
(1990)
Physiology of the Bacterial Cell
-
-
Neidhardt, F.C.1
Ingraham, J.L.2
Schaechter, M.3
-
30
-
-
0004026407
-
Lehninger Principles of Biochemistry
-
New York: Worth Publishers Inc
-
Nelson D.L., Lehninger A.L., Cox M.M. Lehninger Principles of Biochemistry. 3rd Edition.:2000;Worth Publishers Inc, New York
-
(2000)
3rd Edition.
-
-
Nelson, D.L.1
Lehninger, A.L.2
Cox, M.M.3
-
31
-
-
0037406237
-
Development of network-based pathway definitions: The need to analyze real metabolic networks
-
Palsson B.O., Price N.D., Papin J.A. Development of network-based pathway definitions. the need to analyze real metabolic networks Trends Biotechnol. 21:2003;195-198
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 195-198
-
-
Palsson, B.O.1
Price, N.D.2
Papin, J.A.3
-
32
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin J.A., Price N.D., Palsson B.O. Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res. 12:2002;1889-1900
-
(2002)
Genome Res.
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
33
-
-
0038514106
-
Metabolic flux analysis of xylose metabolism in recombinant Saccharomyces cerevisiae using continuous culture
-
Pitkanen J.P., Aristidou A., Salusjarvi L., Ruohonen L., Penttila M. Metabolic flux analysis of xylose metabolism in recombinant Saccharomyces cerevisiae using continuous culture. Metab. Eng. 5:2003;16-31
-
(2003)
Metab. Eng.
, vol.5
, pp. 16-31
-
-
Pitkanen, J.P.1
Aristidou, A.2
Salusjarvi, L.3
Ruohonen, L.4
Penttila, M.5
-
34
-
-
0036100243
-
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis
-
Price N.D., Papin J.A., Palsson B.O. Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. Genome Res. 12:2002;760-769
-
(2002)
Genome Res.
, vol.12
, pp. 760-769
-
-
Price, N.D.1
Papin, J.A.2
Palsson, B.O.3
-
35
-
-
0023408004
-
Expression of the E. coli xylose isomerase gene in Saccharomyces cerevisiae
-
Sarthy A.V., McConaughy B.L., Lobo Z., Sundstrom J.A., Furlong C.E., Hall B.D. Expression of the E. coli xylose isomerase gene in Saccharomyces cerevisiae. Appl. Environ. Microbiol. 53:1987;1996-2000
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 1996-2000
-
-
Sarthy, A.V.1
McConaughy, B.L.2
Lobo, Z.3
Sundstrom, J.A.4
Furlong, C.E.5
Hall, B.D.6
-
36
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling C.H., Letscher D., Palsson B.O. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203:2000;229-248
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
37
-
-
0018399752
-
Uptake and catabolism of D-xylose in Salmonella typhimurium LT2
-
Shamanna D.K., Sanderson K.E. Uptake and catabolism of D-xylose in Salmonella typhimurium LT2. J. Bacteriol. 139:1979;64-70
-
(1979)
J. Bacteriol.
, vol.139
, pp. 64-70
-
-
Shamanna, D.K.1
Sanderson, K.E.2
-
39
-
-
0037394596
-
Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose
-
Sonderegger M., Sauer U. Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose. Appl. Environ. Microbiol. 69:2003;1990-1998
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1990-1998
-
-
Sonderegger, M.1
Sauer, U.2
-
40
-
-
0025866296
-
Network rigidity and metabolic engineering in metabolite overproduction
-
Stephanopoulos G., Vallino J.J. Network rigidity and metabolic engineering in metabolite overproduction. Science. 252:1991;1675-1681
-
(1991)
Science
, vol.252
, pp. 1675-1681
-
-
Stephanopoulos, G.1
Vallino, J.J.2
-
41
-
-
0028316351
-
Fed-batch fermentation of xylose by a fast-growing mutant of xylose-assimilating recombinant Saccharomyces cerevisiae
-
Tantirungkij M., Izuishi T., Seki T., Yoshida T. Fed-batch fermentation of xylose by a fast-growing mutant of xylose-assimilating recombinant Saccharomyces cerevisiae. Appl Microbiol. Biotechnol. 41:1994;8-12
-
(1994)
Appl Microbiol. Biotechnol.
, vol.41
, pp. 8-12
-
-
Tantirungkij, M.1
Izuishi, T.2
Seki, T.3
Yoshida, T.4
-
42
-
-
0034878314
-
Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae: Importance of xylulokinase (XKS1) and oxygen availability
-
Toivari M.H., Aristidou A., Ruohonen L., Penttila M. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae. importance of xylulokinase (XKS1) and oxygen availability Metab. Eng. 3:2001;236-249
-
(2001)
Metab. Eng.
, vol.3
, pp. 236-249
-
-
Toivari, M.H.1
Aristidou, A.2
Ruohonen, L.3
Penttila, M.4
-
43
-
-
0027572102
-
Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction
-
Vallino J.J., Stephanopoulos G. Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction. Biotechnol. Bioeng. 41:1993;633-646
-
(1993)
Biotechnol. Bioeng.
, vol.41
, pp. 633-646
-
-
Vallino, J.J.1
Stephanopoulos, G.2
-
44
-
-
0022507007
-
Redox balances in the metabolism of sugars by yeasts
-
van Dijken J.P., Scheffers W.A. Redox balances in the metabolism of sugars by yeasts. FEMS Microbiol. Rev. 32:1986;199-224
-
(1986)
FEMS Microbiol. Rev.
, vol.32
, pp. 199-224
-
-
Van Dijken, J.P.1
Scheffers, W.A.2
-
45
-
-
0028973161
-
A metabolic network stoichiometry analysis of microbial growth and product formation
-
van Gulik W.M., Heijnen J.J. A metabolic network stoichiometry analysis of microbial growth and product formation. Biotechnol. Bioeng. 48:1995;681-698
-
(1995)
Biotechnol. Bioeng.
, vol.48
, pp. 681-698
-
-
Van Gulik, W.M.1
Heijnen, J.J.2
-
46
-
-
0030199054
-
Validation of a metabolic network for Saccharomyces cerevisiae using mixed substrate studies
-
Vanrolleghem P.A., de Jong-Gubbels P., van Gulik W.M., Pronk J.T., van Dijken J.P., Heijnen S. Validation of a metabolic network for Saccharomyces cerevisiae using mixed substrate studies. Biotechnol. Prog. 12:1996;434-448
-
(1996)
Biotechnol. Prog.
, vol.12
, pp. 434-448
-
-
Vanrolleghem, P.A.1
De Jong-Gubbels, P.2
Van Gulik, W.M.3
Pronk, J.T.4
Van Dijken, J.P.5
Heijnen, S.6
-
47
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
Varma A., Palsson B.O. Metabolic flux balancing. basic concepts, scientific and practical use Bio/Technology. 12:1994;994-998
-
(1994)
Bio/Technology
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
50
-
-
0035809032
-
Intracellular fluxes in a recombinant xylose-utilizing Saccharomyces cerevisiae cultivated anaerobically at different dilution rates and feed concentrations
-
Wahlbom C.F., Eliasson A., Hahn-Hägerdal B. Intracellular fluxes in a recombinant xylose-utilizing Saccharomyces cerevisiae cultivated anaerobically at different dilution rates and feed concentrations. Biotechnol. Bioeng. 72:2001;289-296
-
(2001)
Biotechnol. Bioeng.
, vol.72
, pp. 289-296
-
-
Wahlbom, C.F.1
Eliasson, A.2
Hahn-Hägerdal, B.3
-
51
-
-
0030772483
-
Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilisation
-
Walfridsson M., Anderlund M., Bao X., Hahn-Hägerdal B. Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilisation. Appl. Microbiol. Biotechnol. 48:1997;218-224
-
(1997)
Appl. Microbiol. Biotechnol.
, vol.48
, pp. 218-224
-
-
Walfridsson, M.1
Anderlund, M.2
Bao, X.3
Hahn-Hägerdal, B.4
-
52
-
-
0029909726
-
Ethanolic fermentation of xylose with Saccharomyces cerevisiae harboring the Thermus thermophilus xylA gene, which expresses an active xylose (glucose) isomerase
-
Walfridsson M., Bao X., Anderlund M., Lilius G., Bulow L., Hahn-Hägerdal B. Ethanolic fermentation of xylose with Saccharomyces cerevisiae harboring the Thermus thermophilus xylA gene, which expresses an active xylose (glucose) isomerase. Appl. Environ. Microbiol. 62:1996;4648-4651
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4648-4651
-
-
Walfridsson, M.1
Bao, X.2
Anderlund, M.3
Lilius, G.4
Bulow, L.5
Hahn-Hägerdal, B.6
|