-
1
-
-
33751020853
-
Quadruplex DNA: Sequence, topology and structure
-
DOI 10.1093/nar/gkl655
-
Burge, S., Parkinson, G. N., Hazel, P., Todd, A. K., and Neidle, S. (2006) Quadruplex DNA: Sequence, Topology and Structure Nucleic Acids Res. 34, 5402-5415 (Pubitemid 44742430)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.19
, pp. 5402-5415
-
-
Burge, S.1
Parkinson, G.N.2
Hazel, P.3
Todd, A.K.4
Neidle, S.5
-
2
-
-
0001103466
-
Quadruplex structures in nucleic acids
-
DOI 10.1002/10 97-0282(200 0/2001)56:3<12 3::AID-BIP10 010>3.0.CO;2-3
-
Keniry, M. A. (2000) Quadruplex Structures in Nucleic Acids Biopolymers 56, 123-146 (Pubitemid 33115749)
-
(2000)
Biopolymers
, vol.56
, Issue.3
, pp. 123-146
-
-
Keniry, M.A.1
-
3
-
-
0035929353
-
Switching and signaling at the telomere
-
DOI 10.1016/S0092-8674(01)00492-5
-
Blackburn, E. H. (2001) Switching and Signaling at the Telomere Cell 106, 661-673 (Pubitemid 32900658)
-
(2001)
Cell
, vol.106
, Issue.6
, pp. 661-673
-
-
Blackburn, E.H.1
-
4
-
-
33745849998
-
The structure and function of telomerase reverse transcriptase
-
DOI 10.1146/annurev.biochem.75.103004.142412
-
Autexier, C. and Lue, N. F. (2006) The Structure and Function of Telomerase Reverse Transcriptase Annu. Rev. Biochem. 75, 493-517 (Pubitemid 44118041)
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 493-517
-
-
Autexier, C.1
Lue, N.F.2
-
5
-
-
37049004147
-
Targeting telomeres and telomerase
-
DOI 10.1016/j.biochi.2007.07.011, PII S0300908407001873, Telomeres and Telomerase: from Basic Research to Clinical Applications
-
De Cian, A., Lacroix, L., Douarre, C., Temime-Smaali, N., Trentesaux, C., Riou, J. F., and Mergny, J. L. (2008) Targeting Telomeres and Telomerase Biochimie 90, 131-155 (Pubitemid 350245369)
-
(2008)
Biochimie
, vol.90
, Issue.1
, pp. 131-155
-
-
De Cian, A.1
Lacroix, L.2
Douarre, C.3
Temime-Smaali, N.4
Trentesaux, C.5
Riou, J.-F.6
Mergny, J.-L.7
-
6
-
-
0025877846
-
Inhibition of telomerase by G-quartet DNA structures
-
Zahler, A. M., Williamson, J. R., Cech, T. R., and Prescott, D. M. (1991) Inhibition of Telomerase by G-Quartet DMA Structures Nature 350, 718-720 (Pubitemid 21912306)
-
(1991)
Nature
, vol.350
, Issue.6320
, pp. 718-720
-
-
Zahler, A.M.1
Williamson, J.R.2
Cech, T.R.3
Prescott, D.M.4
-
7
-
-
0031727943
-
G-quadruplex DNA: A target for drug design
-
DOI 10.1038/3949
-
Mergny, J. L. and Helene, C. (1998) G-Quadruplex DNA: A Target for Drug Design Nat. Med. 4, 1366-1367 (Pubitemid 28553455)
-
(1998)
Nature Medicine
, vol.4
, Issue.12
, pp. 1366-1367
-
-
Mergny, J.-L.1
Helene, C.2
-
8
-
-
0032497405
-
NMR-based model of a telomerase-inhibiting compound bound to G- quadruplex DNA
-
DOI 10.1021/bi981330n
-
Fedoroff, O. Y., Salazar, M., Han, H., Chemeris, V. V., Kerwin, S. M., and Hurley, L. H. (1998) NMR-Based Model of a Telomerase-Inhibiting Compound Bound to G-Quadruplex DNA Biochemistry 37, 12367-12374 (Pubitemid 28427520)
-
(1998)
Biochemistry
, vol.37
, Issue.36
, pp. 12367-12374
-
-
Fedoroff, O.Yu.1
Salazar, M.2
Han, H.3
Chemeris, V.V.4
Kerwin, S.M.5
Hurley, L.H.6
-
9
-
-
0030786928
-
Inhibition of human telomerase by a G-Quadruplex-Interactive compound
-
DOI 10.1021/jm970199z
-
Sun, D., Thompson, B., Cathers, B. E., Salazar, M., Kerwin, S. M., Trent, J. O., Jenkins, T. C., Neidle, S., and Hurley, L. H. (1997) Inhibition of Human Telomerase by a G-Quadruplex-Interactive Compound J. Med. Chem. 40, 2113-2116 (Pubitemid 27284346)
-
(1997)
Journal of Medicinal Chemistry
, vol.40
, Issue.14
, pp. 2113-2116
-
-
Sun, D.1
Thompson, B.2
Cathers, B.E.3
Salazar, M.4
Kerwin, S.M.5
Trent, J.O.6
Jenkins, T.C.7
Neidle, S.8
Hurley, L.H.9
-
10
-
-
0035857396
-
Telomestatin, a novel telomerase inhibitor from Streptomyces anulatus [17]
-
DOI 10.1021/ja005780q
-
Shin-ya, K., Wierzba, K., Matsuo, K., Ohtani, T., Yamada, Y., Furihata, K., Hayakawa, Y., and Seto, H. (2001) Telomestatin, a Novel Telomerase Inhibitor from Streptomyces anulatus J. Am. Chem. Soc. 123, 1262-1263 (Pubitemid 32148203)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.6
, pp. 1262-1263
-
-
Shin-ya, K.1
Wierzba, K.2
Matsuo, K.3
Ohtani, T.4
Yamada, Y.5
Furihata, K.6
Hayakawa, Y.7
Seto, H.8
-
11
-
-
34547562328
-
G-Quadruplex Recognition by Quinacridines: A SAR, NMR, and Biological Study
-
Hounsou, C., Guittat, L., Monchaud, D., Jourdan, M., Saettel, N., Mergny, J. L., and Teulade Fichou, M. P. (2007) G-Quadruplex Recognition by Quinacridines: A SAR, NMR, and Biological Study ChemMedChem 2, 655-666
-
(2007)
ChemMedChem
, vol.2
, pp. 655-666
-
-
Hounsou, C.1
Guittat, L.2
Monchaud, D.3
Jourdan, M.4
Saettel, N.5
Mergny, J.L.6
Teulade Fichou, M.P.7
-
12
-
-
13944272246
-
The G-quadruplex-interactive molecule BRACO-19 inhibits tumor growth, consistent with telomere targeting and interference with telomerase function
-
DOI 10.1158/0008-5472.CAN-04-2910
-
Burger, A. M., Dai, F., Schultes, C. M., Reszka, A. P., Moore, M. J., Double, J. A., and Neidle, S. (2005) The G-Quadruplex-Interactive Molecule BRACO-19 Inhibits Tumor Growth, Consistent with Telomere Targeting and Interference with Telomerase Function Cancer Res. 65, 1489-1496 (Pubitemid 40270178)
-
(2005)
Cancer Research
, vol.65
, Issue.4
, pp. 1489-1496
-
-
Burger, A.M.1
Dai, F.2
Schultes, C.M.3
Reszka, A.P.4
Moore, M.J.5
Double, J.A.6
Neidle, S.7
-
13
-
-
0032477950
-
Porphyrin Binding to Quadruplexed T4G4
-
Anantha, N. V., Azam, M., and Sheardy, R. D. (1998) Porphyrin Binding to Quadruplexed T4G4 Biochemistry 37, 2709-2714
-
(1998)
Biochemistry
, vol.37
, pp. 2709-2714
-
-
Anantha, N.V.1
Azam, M.2
Sheardy, R.D.3
-
14
-
-
33750297406
-
Oxazole-based peptide macrocycles: A new class of G-quadruplex binding ligands
-
DOI 10.1021/ja064713e
-
Jantos, K., Rodriguez, R., Ladame, S., Shirude, P. S., and Balasubramanian, S. (2006) Oxazole-Based Peptide Macrocycles: A New Class of G-Quadruplex Binding Ligands J. Am. Chem. Soc. 128, 13662-13663 (Pubitemid 44632826)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.42
, pp. 13662-13663
-
-
Jantos, K.1
Rodriguez, R.2
Ladame, S.3
Shirude, P.S.4
Balasubramanian, S.5
-
15
-
-
47649122998
-
Targeting Human Telomeric G-Quadruplex DNA with Oxazole-Containing Macrocyclic Compounds
-
Pilch, D. S., Barbieri, C. M., Rzuczek, S. G., LaVoie, E. J., and Rice, J. E. (2008) Targeting Human Telomeric G-Quadruplex DNA with Oxazole-Containing Macrocyclic Compounds Biochimie 90, 1233-1249
-
(2008)
Biochimie
, vol.90
, pp. 1233-1249
-
-
Pilch, D.S.1
Barbieri, C.M.2
Rzuczek, S.G.3
Lavoie, E.J.4
Rice, J.E.5
-
17
-
-
64349090873
-
Selectivity in Ligand Recognition of G-Quadruplex Loops
-
Campbell, N. H., Patel, M., Tofa, A. B., Ghosh, R., Parkinson, G. N., and Neidle, S. (2009) Selectivity in Ligand Recognition of G-Quadruplex Loops Biochemistry 48, 1675-1680
-
(2009)
Biochemistry
, vol.48
, pp. 1675-1680
-
-
Campbell, N.H.1
Patel, M.2
Tofa, A.B.3
Ghosh, R.4
Parkinson, G.N.5
Neidle, S.6
-
18
-
-
0037423728
-
Structure of a G-quadruplex-ligand complex
-
DOI 10.1016/S0022-2836(02)01354-2
-
Haider, S. M., Parkinson, G. N., and Neidle, S. (2003) Structure of a G-quadruplex-Ligand Complex J. Mol. Biol. 326, 117-125 (Pubitemid 36279362)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.1
, pp. 117-125
-
-
Haider, S.M.1
Parkinson, G.N.2
Neidle, S.3
-
19
-
-
70450158916
-
Tandem Application of Virtual Screening and NMR Experiments in the Discovery of Brand New DNA Quadruplex Groove Binders
-
Cosconati, S., Marinelli, L., Trotta, R., Virno, A., Mayol, L., Novellino, E., Olson, A. J., and Randazzo, A. (2009) Tandem Application of Virtual Screening and NMR Experiments in the Discovery of Brand New DNA Quadruplex Groove Binders J. Am. Chem. Soc. 131, 16336-16337
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16336-16337
-
-
Cosconati, S.1
Marinelli, L.2
Trotta, R.3
Virno, A.4
Mayol, L.5
Novellino, E.6
Olson, A.J.7
Randazzo, A.8
-
20
-
-
77954195336
-
Probing the Recognition Surface of a DNA Triplex: Binding Studies with Intercalator Neomycin Conjugates
-
Xue, L., Xi, H., Kumar, S., Gray, D., Davis, E., Hamilton, P., Skriba, M., and Arya, D. P. (2010) Probing the Recognition Surface of a DNA Triplex: Binding Studies with Intercalator Neomycin Conjugates Biochemistry 49, 5540-5552
-
(2010)
Biochemistry
, vol.49
, pp. 5540-5552
-
-
Xue, L.1
Xi, H.2
Kumar, S.3
Gray, D.4
Davis, E.5
Hamilton, P.6
Skriba, M.7
Arya, D.P.8
-
21
-
-
0037033436
-
Pyrene-neomycin conjugate: Dual recognition of a DNA triple helix
-
Xue, L., Charles, I., and Arya, D. P. (2002) Pyrene-Neomycin Conjugate: Dual Recognition of a DNA Triple Helix Chem. Commun. 1, 70-71 (Pubitemid 34081608)
-
(2002)
Chemical Communications
, Issue.1
, pp. 70-71
-
-
Xue, L.1
Charles, I.2
Arya, D.P.3
-
22
-
-
0038682830
-
Combining the best in triplex recognition: Synthesis and nucleic acid binding of a BQQ-neomycin conjugate
-
DOI 10.1021/ja034241t
-
Arya, D. P., Xue, L., and Tennant, P. (2003) Combining the Best in Triplex Recognition: Synthesis and Nucleic Acid Binding of a BQQ-Neomycin Conjugate J. Am. Chem. Soc. 125, 8070-8071 (Pubitemid 36828550)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.27
, pp. 8070-8071
-
-
Arya, D.P.1
Xue, L.2
Tennant, P.3
-
23
-
-
47149091638
-
Molecular Recognition of a DNA:RNA Hybrid: Sub-Nanomolar Binding by a Neomycin-Methidium Conjugate
-
Shaw, N. N., Xi, H., and Arya, D. P. (2008) Molecular Recognition of a DNA:RNA Hybrid: Sub-Nanomolar Binding by a Neomycin-Methidium Conjugate Bioorg. Med. Chem. Lett. 18, 4142-4145
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 4142-4145
-
-
Shaw, N.N.1
Xi, H.2
Arya, D.P.3
-
24
-
-
47149090954
-
Novel Targets for Aminoglycosides
-
Arya, D. P., Ed., Wiley, New York.
-
Arya, D. P., Shaw, N., and Xi, H. (2007) Novel Targets for Aminoglycosides. In Aminoglycoside Antibiotics: From chemical biology to drug discovery (Arya, D. P., Ed.) pp 289 - 314, Wiley, New York.
-
(2007)
Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery
, pp. 289-314
-
-
Arya, D.P.1
Shaw, N.2
Xi, H.3
-
25
-
-
33748663132
-
Aminoglycoside-nucleic acid interactions: The case for neomycin
-
DOI 10.1007/b100446, DNA Binders and Related Subjects
-
Arya, D. P. (2005) Aminoglycoside-Nucleic Acid Interactions: The Case for Neomycin Top. Curr. Chem. 253, 149-178 (Pubitemid 44420842)
-
(2005)
Topics in Current Chemistry
, vol.253
, pp. 149-178
-
-
Arya, D.P.1
-
26
-
-
0035823839
-
Neomycin-Induced Hybrid Triplex Formation
-
Arya, D. P., Coffee, R. L., Jr., and Charles, I. (2001) Neomycin-Induced Hybrid Triplex Formation J. Am. Chem. Soc. 123, 11093-11094
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 11093-11094
-
-
Arya, D.P.1
Coffee Jr., R.L.2
Charles, I.3
-
27
-
-
0037414294
-
Neomycin binding to watson-hoogsteen (W-H) DNA triplex groove: A model
-
DOI 10.1021/ja027765m
-
Arya, D. P., Micovic, L., Charles, I., Coffee, R. L., Jr., Willis, B., and Xue, L. (2003) Neomycin Binding to Watson-Hoogsteen (W-H) DNA Triplex Groove: A Model J. Am. Chem. Soc. 125, 3733-3744 (Pubitemid 36512360)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.13
, pp. 3733-3744
-
-
Arya, D.P.1
Micovic, L.2
Charles, I.3
Coffee Jr., R.L.4
Willis, B.5
Xue, L.6
-
28
-
-
0034833770
-
Aminoglycoside-nucleic acid interactions: Remarkable stabilization of DNA and RNA triple helices by neomycin
-
DOI 10.1021/ja003052x
-
Arya, D. P., Coffee, R. L., Jr., Willis, B., and Abramovitch, A. I. (2001) Aminoglycoside-Nucleic Acid Interactions: Remarkable Stabilization of DNA and RNA Triple Helices by Neomycin J. Am. Chem. Soc. 123, 5385-5395 (Pubitemid 32888504)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.23
, pp. 5385-5395
-
-
Arya, D.P.1
Coffee Jr., R.L.2
Willis, B.3
Abramovitch, A.I.4
-
29
-
-
0034605181
-
DNA triple helix stabilization by aminoglycoside antibiotics
-
DOI 10.1016/S0960-894X(00)00372-3, PII S0960894X00003723
-
Arya, D. P. and Coffee, R. L., Jr. (2000) DNA Triple Helix Stabilization by Aminoglycoside Antibiotics Bioorg. Med. Chem. Lett. 10, 1897-1899 (Pubitemid 30663335)
-
(2000)
Bioorganic and Medicinal Chemistry Letters
, vol.10
, Issue.17
, pp. 1897-1899
-
-
Arya, D.P.1
Coffee Jr. R.Lane2
-
30
-
-
67649378395
-
Molecular Recognition of Single-Stranded RNA: Neomycin Binding to Poly(A)
-
Xi, H., Gray, D., Kumar, S., and Arya, D. P. (2009) Molecular Recognition of Single-Stranded RNA: Neomycin Binding to Poly(A) FEBS Lett. 583, 2269-2275
-
(2009)
FEBS Lett.
, vol.583
, pp. 2269-2275
-
-
Xi, H.1
Gray, D.2
Kumar, S.3
Arya, D.P.4
-
31
-
-
0041932005
-
Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: Results from a competition dialysis study
-
DOI 10.1021/ja035117c
-
Arya, D. P., Xue, L., and Willis, B. (2003) Aminoglycoside (Neomycin) Preference is for A-Form Nucleic Acids, Not just RNA: Results from a Competition Dialysis Study J. Am. Chem. Soc. 125, 10148-10149 (Pubitemid 37022207)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.34
, pp. 10148-10149
-
-
Arya, D.P.1
Xue, L.2
Willis, B.3
-
32
-
-
20644459244
-
Neomycin improves cationic lipid-mediated transfection of DNA in human cells
-
DOI 10.1016/j.bmcl.2005.04.038, PII S0960894X05005202
-
Napoli, S., Carbone, G. M., Catapano, C. V., Shaw, N., and Arya, D. P. (2005) Neomycin Improves Cationic Lipid-Mediated Transfection of DNA in Human Cells Bioorg. Med. Chem. Lett. 15, 3467-3469 (Pubitemid 40835758)
-
(2005)
Bioorganic and Medicinal Chemistry Letters
, vol.15
, Issue.14
, pp. 3467-3469
-
-
Napoli, S.1
Carbone, G.M.2
Catapano, C.V.3
Shaw, N.4
Arya, Dev.P.5
-
33
-
-
8544250602
-
From triplex to B-form duplex stabilization: Reversal of target selectivity by aminoglycoside dimers
-
DOI 10.1016/j.bmcl.2004.07.002, PII S0960894X0400887X
-
Arya, D. P., Coffee, R. L., Jr., and Xue, L. (2004) From Triplex to B-Form Duplex Stabilization: Reversal of Target Selectivity by Aminoglycoside Dimers Bioorg. Med. Chem. Lett. 14, 4643-4646 (Pubitemid 39490282)
-
(2004)
Bioorganic and Medicinal Chemistry Letters
, vol.14
, Issue.18
, pp. 4643-4646
-
-
Arya, D.P.1
Coffee Jr., R.L.2
Xue, L.3
-
34
-
-
0141919831
-
Reaching into the major groove of B-DNA: Synthesis and nucleic acid binding of a neomycin-Hoechst 33258 conjugate
-
DOI 10.1021/ja036742k
-
Arya, D. P. and Willis, B. (2003) Reaching into the Major Groove of B-DNA: Synthesis and Nucleic Acid Binding of a Neomycin-Hoechst 33258 Conjugate J. Am. Chem. Soc. 125, 12398-12399 (Pubitemid 37254744)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.41
, pp. 12398-12399
-
-
Arya, D.P.1
Willis, B.2
-
35
-
-
74949121427
-
Triple Recognition of B-DNA by a Neomycin-Hoechst 33258-Pyrene Conjugate
-
Willis, B. and Arya, D. P. (2010) Triple Recognition of B-DNA by a Neomycin-Hoechst 33258-Pyrene Conjugate Biochemistry 49, 452-469
-
(2010)
Biochemistry
, vol.49
, pp. 452-469
-
-
Willis, B.1
Arya, D.P.2
-
36
-
-
27844606478
-
Synthesis of neomycin-DNA/peptide nucleic acid conjugates
-
DOI 10.1081/CAR-200059973
-
Charles, I. and Arya, D. P. (2005) Synthesis of Neomycin-DNA/peptide Nucleic Acid Conjugates J. Carbohydr. Chem. 24, 145-160 (Pubitemid 41659678)
-
(2005)
Journal of Carbohydrate Chemistry
, vol.24
, Issue.2
, pp. 145-160
-
-
Charles, I.1
Arya, D.P.2
-
37
-
-
33846463039
-
Sequence-Specific Targeting of RNA with an Oligonucleotide-Neomycin Conjugate
-
Charles, I., Xi, H., and Arya, D. P. (2007) Sequence-Specific Targeting of RNA with an Oligonucleotide-Neomycin Conjugate Bioconjugate Chem. 18, 160-169
-
(2007)
Bioconjugate Chem.
, vol.18
, pp. 160-169
-
-
Charles, I.1
Xi, H.2
Arya, D.P.3
-
38
-
-
0037029803
-
Synthesis of aminoglycoside-DNA conjugates
-
DOI 10.1016/S0960-894X(02)00157-9, PII S0960894X02001579
-
Charles, I., Xue, L., and Arya, D. P. (2002) Synthesis of Aminoglycoside-DNA Conjugates Bioorg. Med. Chem. Lett. 12, 1259-1262 (Pubitemid 34327494)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.9
, pp. 1259-1262
-
-
Charles, I.1
Xue, L.2
Arya, D.P.3
-
39
-
-
79951591766
-
New Approaches toward Recognition of Nucleic Acid Triple Helices
-
Arya Dev, P. (2011) New Approaches toward Recognition of Nucleic Acid Triple Helices Acc. Chem. Res. 44, 134-146
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 134-146
-
-
Arya Dev, P.1
-
40
-
-
33646862380
-
An Expanding View of Aminoglycoside-Nucleic Acid Recognition
-
DOI 10.1016/S0065-2318(06)60006-1, PII S0065231806600061
-
Willis, B. and Arya, D. P. (2006) An Expanding View of Aminoglycoside-Nucleic Acid Recognition Adv. Carbohydr. Chem. Biochem. 60, 251-302 (Pubitemid 43783388)
-
(2006)
Advances in Carbohydrate Chemistry and Biochemistry
, vol.60
, pp. 251-302
-
-
Willis, B.1
Arya, D.P.2
-
41
-
-
78149438102
-
Aminoglycoside Binding to Oxytricha Nova Telomeric DNA
-
Ranjan, N., Andreasen, K. F., Kumar, S., Hyde-Volpe, D., and Arya, D. P. (2010) Aminoglycoside Binding to Oxytricha Nova Telomeric DNA Biochemistry 49, 9891-9903
-
(2010)
Biochemistry
, vol.49
, pp. 9891-9903
-
-
Ranjan, N.1
Andreasen, K.F.2
Kumar, S.3
Hyde-Volpe, D.4
Arya, D.P.5
-
42
-
-
2942617180
-
Nucleic acid-binding ligands identify new mechanisms to inhibit telomerase
-
DOI 10.1016/j.bmcl.2004.04.055, PII S0960894X04005530
-
Dominick, P. K., Keppler, B. R., Legassie, J. D., Moon, I. K., and Jarstfer, M. B. (2004) Nucleic Acid-Binding Ligands Identify New Mechanisms to Inhibit Telomerase Bioorg. Med. Chem. Lett. 14, 3467-3471 (Pubitemid 38737148)
-
(2004)
Bioorganic and Medicinal Chemistry Letters
, vol.14
, Issue.13
, pp. 3467-3471
-
-
Dominick, P.K.1
Keppler, B.R.2
Legassie, J.D.3
Moon, I.K.4
Jarstfer, M.B.5
-
43
-
-
47249089630
-
Polymorphism of Human Telomeric Quadruplex Structures
-
Dai, J., Carver, M., and Yang, D. (2008) Polymorphism of Human Telomeric Quadruplex Structures Biochimie 90, 1172-1183
-
(2008)
Biochimie
, vol.90
, pp. 1172-1183
-
-
Dai, J.1
Carver, M.2
Yang, D.3
-
44
-
-
0027918585
-
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex
-
DOI 10.1016/0969-2126(93)90015-9
-
3] G-Tetraplex Structure 1, 263-282 (Pubitemid 2031126)
-
(1993)
Structure
, vol.1
, Issue.4
, pp. 263-282
-
-
Wang Yong1
Patel, D.J.2
-
45
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
DOI 10.1038/nature755
-
Parkinson, G. N., Lee, M. P. H., and Neidle, S. (2002) Crystal Structure of Parallel Quadruplexes from Human Telomeric DNA Nature 417, 876-880 (Pubitemid 34670337)
-
(2002)
Nature
, vol.417
, Issue.6891
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.H.2
Neidle, S.3
-
46
-
-
34249846802
-
Structure of the intramolecular human telomeric G-quadruplex in potassium solution: A novel adenine triple formation
-
DOI 10.1093/nar/gkm009
-
Dai, J., Punchihewa, C., Ambrus, A., Chen, D., Jones, R. A., and Yang, D. (2007) Structure of the Intramolecular Human Telomeric G-Quadruplex in Potassium Solution: A Novel Adenine Triple Formation Nucleic Acids Res. 35, 2440-2450 (Pubitemid 47073725)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.7
, pp. 2440-2450
-
-
Dai, J.1
Punchihewa, C.2
Ambrus, A.3
Chen, D.4
Jones, R.A.5
Yang, D.6
-
50
-
-
23844438712
-
Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal
-
DOI 10.1093/nar/gki782
-
Li, J., Correia, J., Wang, L., Trent, J. O., and Chaires, C. B. (2005) Not so Crystal Clear: The Structure of the Human Telomere G-Quadruplex in Solution Differs from that Present in a Crystal Nucleic Acids Res. 33, 4649-4659 (Pubitemid 41222579)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.14
, pp. 4649-4659
-
-
Li, J.1
Correia, J.J.2
Wang, L.3
Trent, J.O.4
Chaires, J.B.5
-
51
-
-
66349101293
-
Interactions of Actinomycin D with Human Telomeric G-Quadruplex DNA
-
Hudson, J. S., Brooks, S. C., and Graves, D. E. (2009) Interactions of Actinomycin D with Human Telomeric G-Quadruplex DNA Biochemistry 48, 4440-4447
-
(2009)
Biochemistry
, vol.48
, pp. 4440-4447
-
-
Hudson, J.S.1
Brooks, S.C.2
Graves, D.E.3
-
52
-
-
33644890205
-
Neomycin-capped aromatic platforms: Quadruplex DNA recognition and telomerase inhibition
-
DOI 10.1039/b516378a
-
Kaiser, M., Cian, A. D., Sainlos, M., Renner, C., Mergny, J., and Teulade-Fichou, M. (2006) Neomycin-Capped Aromatic Platforms: Quadruplex DNA Recognition and Telomerase Inhibition Org. Biomol. Chem. 4, 1049-1057 (Pubitemid 43383351)
-
(2006)
Organic and Biomolecular Chemistry
, vol.4
, Issue.6
, pp. 1049-1057
-
-
Kaiser, M.1
De Cian, A.2
Sainlos, M.3
Renner, C.4
Mergny, J.-L.5
Teulade-Fichou, M.-P.6
-
53
-
-
4043162793
-
VEGA - An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming
-
DOI 10.1023/B:JCAM.0000035186.90683.f2
-
Pedretti, A., Villa, L., and Vistoli, G. (2004) VEGA-an Open Platform to Develop Chemo-Bio-Informatics Applications, using Plug-in Architecture and Script Programming J. Comput.-Aided Mol. Des. 18, 167-173 (Pubitemid 39069412)
-
(2004)
Journal of Computer-Aided Molecular Design
, vol.18
, Issue.3
, pp. 167-173
-
-
Pedretti, A.1
Villa, L.2
Vistoli, G.3
-
54
-
-
0033397980
-
Python: A programming language for software integration and development
-
Sanner, M. F. (1999) Python: A Programming Language for Software Integration and Development J. Mol. Graphics Modell. 17, 57-61 (Pubitemid 30029318)
-
(1999)
Journal of Molecular Graphics and Modelling
, vol.17
, Issue.1
, pp. 57-61
-
-
Sanner, M.F.1
-
55
-
-
33846947206
-
A G-Quadruplex Ligand with 10000-Fold Selectivity over Duplex DNA
-
Dixon, I. M., Lopez, F., Tejera, A. M., Estève, J., Blasco, M. A., Pratviel, G., and Meunier, B. (2007) A G-Quadruplex Ligand with 10000-Fold Selectivity Over Duplex DNA J. Am. Chem. Soc. 129, 1502-1503
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 1502-1503
-
-
Dixon, I.M.1
Lopez, F.2
Tejera, A.M.3
Estève, J.4
Blasco, M.A.5
Pratviel, G.6
Meunier, B.7
-
56
-
-
77952017562
-
Structural and Conformational Requisites in DNA Quadruplex Groove Binding: Another Piece to the Puzzle
-
Cosconati, S., Marinelli, L., Trotta, R., Virno, A., De Tito, S., Romagnoli, R., Pagano, B., Limongelli, V., Giancola, C., Baraldi, P. G., Mayol, L., Novellino, E., and Randazzo, A. (2010) Structural and Conformational Requisites in DNA Quadruplex Groove Binding: Another Piece to the Puzzle J. Am. Chem. Soc. 132, 6425-6433
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 6425-6433
-
-
Cosconati, S.1
Marinelli, L.2
Trotta, R.3
Virno, A.4
De Tito, S.5
Romagnoli, R.6
Pagano, B.7
Limongelli, V.8
Giancola, C.9
Baraldi, P.G.10
Mayol, L.11
Novellino, E.12
Randazzo, A.13
-
57
-
-
0034819870
-
Design and synthesis of the G-quadruplex-specific cleaving reagent perylene-EDTA·iron(II) [16]
-
DOI 10.1021/ja0156439
-
Tuntiwechapikul, W., Lee, J. T., and Salazar, M. (2001) Design and Synthesis of the G-Quadruplex-Specific Cleaving Reagent Perylene- EDTA•Iron(II) J. Am. Chem. Soc. 123, 5606-5607 (Pubitemid 32888543)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.23
, pp. 5606-5607
-
-
Tuntiwechapikul, W.1
Jeong Tae Lee2
Salazar, M.3
-
58
-
-
0035856562
-
Cleavage of telomeric G-quadruplex DNA with perylene-EDTA·Fe(II)
-
DOI 10.1021/bi011363u
-
Tuntiwechapikul, W. and Salazar, M. (2001) Cleavage of Telomeric G-Quadruplex DNA with Perylene-EDTA•Fe(II) Biochemistry 40, 13652-13658 (Pubitemid 33130793)
-
(2001)
Biochemistry
, vol.40
, Issue.45
, pp. 13652-13658
-
-
Tuntiwechapikul, W.1
Salazar, M.2
-
59
-
-
0037119783
-
Perylene diimides with different side chains are selective in inducing different G-Quadruplex DNA structures and in inhibiting telomerase
-
DOI 10.1016/S0960-894X(02)00504-8, PII S0960894X02005048
-
Rossetti, L., Franceschin, M., Bianco, A., Ortaggi, G., and Savino, M. (2002) Perylene Diimides with Different Side Chains are Selective in Inducing Different G-Quadruplex DNA Structures and in Inhibiting Telomerase Bioorg. Med. Chem. Lett. 12, 2527-2533 (Pubitemid 35245274)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.18
, pp. 2527-2533
-
-
Rossetti, L.1
Franceschin, M.2
Bianco, A.3
Ortaggi, G.4
Savino, M.5
-
60
-
-
67649647842
-
Selective G-Quadruplex Ligands: The Significant Role of Side Chain Charge Density in a Series of Perylene Derivatives
-
Micheli, E., Lombardo, C. M., DAmbrosio, D., Franceschin, M., Neidle, S., and Savino, M. (2009) Selective G-Quadruplex Ligands: The Significant Role of Side Chain Charge Density in a Series of Perylene Derivatives Bioorg. Med. Chem. Lett. 19, 3903-3908
-
(2009)
Bioorg. Med. Chem. Lett.
, vol.19
, pp. 3903-3908
-
-
Micheli, E.1
Lombardo, C.M.2
Dambrosio, D.3
Franceschin, M.4
Neidle, S.5
Savino, M.6
-
61
-
-
33947713244
-
New highly hydrosoluble and not self-aggregated perylene derivatives with three and four polar side-chains as G-quadruplex telomere targeting agents and telomerase inhibitors
-
DOI 10.1016/j.bmcl.2007.02.021, PII S0960894X07002089
-
Franceschin, M., Pascucci, E., Alvino, A., DAmbrosio, D., Bianco, A., Ortaggi, G., and Savino, M. (2007) New Highly Hydrosoluble and Not Self-Aggregated Perylene Derivatives with Three and Four Polar Side-Chains as G-Quadruplex Telomere Targeting Agents and Telomerase Inhibitors Bioorg. Med. Chem. Lett. 17, 2515-2522 (Pubitemid 46507784)
-
(2007)
Bioorganic and Medicinal Chemistry Letters
, vol.17
, Issue.9
, pp. 2515-2522
-
-
Franceschin, M.1
Pascucci, E.2
Alvino, A.3
D'Ambrosio, D.4
Bianco, A.5
Ortaggi, G.6
Savino, M.7
-
62
-
-
22144448571
-
Competition dialysis: An assay to measure the structural selectivity of drug-nucleic acid interactions
-
DOI 10.2174/1568011054222292
-
Chaires, J. B. (2005) Competition Dialysis: An Assay to Measure the Structural Selectivity of Drug-Nucleic Acid Interactions Curr. Med. Chem.: Anti-Cancer Agents 5, 339-352 (Pubitemid 40974808)
-
(2005)
Current Medicinal Chemistry - Anti-Cancer Agents
, vol.5
, Issue.4
, pp. 339-352
-
-
Chaires, J.B.1
-
63
-
-
0033534146
-
Sequence and structural selectivity of nucleic acid binding ligands
-
Ren, J. and Chaires, J. B. (1999) Sequence and Structural Selectivity of Nucleic Acid Binding Ligands Biochemistry 38, 16067-16075 (Pubitemid 129520527)
-
(1999)
Biochemistry
, vol.38
, Issue.49
, pp. 16067-16075
-
-
Ren, J.1
Chaires, J.B.2
-
64
-
-
35448975647
-
Use of competition dialysis in the discovery of G-quadruplex selective ligands
-
DOI 10.1016/j.ymeth.2007.08.003, PII S1046202307001387
-
Ragazzon, P. and Chaires, J. B. (2007) Use of Competition Dialysis in the Discovery of G-Quadruplex Selective Ligands Methods 43, 313-323 (Pubitemid 47633211)
-
(2007)
Methods
, vol.43
, Issue.4
, pp. 313-323
-
-
Ragazzon, P.1
Chaires, J.B.2
-
65
-
-
1642576322
-
A Fluorescent Intercalator Displacement Assay for Establishing DNA Binding Selectivity and Affinity
-
Tse, W. C. and Boger, D. L. (2004) A Fluorescent Intercalator Displacement Assay for Establishing DNA Binding Selectivity and Affinity Acc. Chem. Res. 37, 61-69
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 61-69
-
-
Tse, W.C.1
Boger, D.L.2
-
66
-
-
0034833710
-
A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity
-
DOI 10.1021/ja010041a
-
Boger, D. L., Fink, B. E., Brunette, S. R., Tse, W. C., and Hedrick, M. P. (2001) A Simple, High-Resolution Method for Establishing DNA Binding Affinity and Sequence Selectivity J. Am. Chem. Soc. 123, 5878-5891 (Pubitemid 32888456)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.25
, pp. 5878-5891
-
-
Boger, D.L.1
Fink, B.E.2
Brunette, S.R.3
Tse, W.C.4
Hedrick, M.P.5
-
67
-
-
33746809014
-
Development of a fluorescent intercalator displacement assay (G4-FID) for establishing quadruplex-DNA affinity and selectivity of putative ligands
-
DOI 10.1016/j.bmcl.2006.06.067, PII S0960894X06007335
-
Monchaud, D., Allain, C., and Teulade-Fichou, M. (2006) Development of a Fluorescent Intercalator Displacement Assay (G4-FID) for Establishing Quadruplex-DNA Affinity and Selectivity of Putative Ligands Bioorg. Med. Chem. Lett. 16, 4842-4845 (Pubitemid 44175856)
-
(2006)
Bioorganic and Medicinal Chemistry Letters
, vol.16
, Issue.18
, pp. 4842-4845
-
-
Monchaud, D.1
Allain, C.2
Teulade-Fichou, M.-P.3
-
68
-
-
0036888355
-
The aggregation and G-quadruplex DNA selectivity of charged 3,4,9,10-perylenetetracarboxylic acid diimides
-
DOI 10.1016/S0960-894X(02)00763-1, PII S0960894X02007631
-
Kern, J. T. and Kerwin, S. M. (2002) The Aggregation and G-Quadruplex DNA Selectivity of Charged 3,4,9,10-Perylenetetracarboxylic Acid Diimides Bioorg. Med. Chem. Lett. 12, 3395-3398 (Pubitemid 35292455)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.23
, pp. 3395-3398
-
-
Kern, J.T.1
Kerwin, S.M.2
-
69
-
-
0037060042
-
Perylene diimide G-quadruplex DNA binding selectivity is mediated by ligand aggregation
-
DOI 10.1016/S0960-894X(01)00775-2, PII S0960894X01007752
-
Kerwin, S. M., Chen, G., Kern, J. T., and Thomas, P. W. (2002) Perylene Diimide G-Quadruplex DNA Binding Selectivity is Mediated by Ligand Aggregation Bioorg. Med. Chem. Lett. 12, 447-450 (Pubitemid 34121052)
-
(2002)
Bioorganic and Medicinal Chemistry Letters
, vol.12
, Issue.3
, pp. 447-450
-
-
Kerwin, S.M.1
Chen, G.2
Kern, J.T.3
Thomas, P.W.4
-
70
-
-
33744772345
-
A spectroscopic study on the interactions of porphyrin with G-quadruplex DNAs
-
DOI 10.1021/bi052356z
-
Wei, C., Jia, G., Yuan, J., Feng, Z., and Li, C. (2006) A Spectroscopic Study on the Interactions of Porphyrin with G-Quadruplex DNAs Biochemistry 45, 6681-6691 (Pubitemid 43825369)
-
(2006)
Biochemistry
, vol.45
, Issue.21
, pp. 6681-6691
-
-
Wei, C.1
Jia, G.2
Yuan, J.3
Feng, Z.4
Li, C.5
-
71
-
-
33947647457
-
1 promoter: Model quadruplex interactions with a cationic porphyrin
-
DOI 10.1529/biophysj.106.097246
-
Freyer, M. W., Buscaglia, R., Kaplan, K., Cashman, D., Hurley, L. H., and Lewis, E. A. (2007) Biophysical Studies of the c-MYC NHE III1 Promoter: Model Quadruplex Interactions with a Cationic Porphyrin Biophys. J. 92, 2007-2015 (Pubitemid 46495264)
-
(2007)
Biophysical Journal
, vol.92
, Issue.6
, pp. 2007-2015
-
-
Freyer, M.W.1
Buscaglia, R.2
Kaplan, K.3
Cashman, D.4
Hurley, L.H.5
Lewis, E.A.6
-
72
-
-
0033541133
-
Intercalative G-Tetraplex Stabilization of Telomeric DNA by a Cationic Porphyrin
-
Haq, I., Trent, J. O., Chowdhry, B. Z., and Jenkins, T. C. (1999) Intercalative G-Tetraplex Stabilization of Telomeric DNA by a Cationic Porphyrin J. Am. Chem. Soc. 121, 1768-1779
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 1768-1779
-
-
Haq, I.1
Trent, J.O.2
Chowdhry, B.Z.3
Jenkins, T.C.4
-
73
-
-
26944463127
-
Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats
-
DOI 10.1093/nar/gki898
-
Vorlíčková, M., Chládková, J., Kejnovská, I., Fialová, M., and Kypr, J. (2005) Guanine Tetraplex Topology of Human Telomere DNA is Governed by the Number of (TTAGGG) Repeats Nucleic Acids Res. 33, 5851-5860 (Pubitemid 41742604)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.18
, pp. 5851-5860
-
-
Vorlickova, M.1
Chladkova, J.2
Kejnovska, I.3
Fialova, M.4
Kypr, J.5
-
74
-
-
0034725408
-
Naphthalene- and perylene-based linkers for the stabilization of hairpin triplexes
-
DOI 10.1021/ja0001714
-
Bevers, S., Schutte, S., and McLaughlin, L. W. (2000) Naphthalene- and Perylene-Based Linkers for the Stabilization of Hairpin Triplexes J. Am. Chem. Soc. 122, 5905-5915 (Pubitemid 30451095)
-
(2000)
Journal of the American Chemical Society
, vol.122
, Issue.25
, pp. 5905-5915
-
-
Bevers, S.1
Schutte, S.2
McLaughlin, L.W.3
-
75
-
-
76149120388
-
AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading
-
Trott, O. and Olson, A. J. (2010) AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading J. Comput. Chem. 31, 455-461
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
|