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Volumn 583, Issue 13, 2009, Pages 2269-2275

Molecular recognition of single-stranded RNA: Neomycin binding to poly(A)

Author keywords

Aminoglycoside; DNA; Neomycin; Poly(A); RNA; RNA recognition

Indexed keywords

NEOMYCIN; PAROMOMYCIN; POLYADENYLIC ACID; POLYADENYLIC ACID BINDING PROTEIN; SINGLE STRANDED RNA;

EID: 67649378395     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2009.06.007     Document Type: Article
Times cited : (47)

References (39)
  • 1
    • 33646862380 scopus 로고    scopus 로고
    • An expanding view of aminoglycoside-nucleic acid recognition
    • Willis B., and Arya D.P. An expanding view of aminoglycoside-nucleic acid recognition. Adv. Carbohydr. Chem. Biochem. 60 (2006) 251-302
    • (2006) Adv. Carbohydr. Chem. Biochem. , vol.60 , pp. 251-302
    • Willis, B.1    Arya, D.P.2
  • 2
    • 33748663132 scopus 로고    scopus 로고
    • Aminoglycoside-nucleic acid interactions: the case for neomycin
    • Arya D.P. Aminoglycoside-nucleic acid interactions: the case for neomycin. Top. Curr. Chem. 253 (2005) 149-178
    • (2005) Top. Curr. Chem. , vol.253 , pp. 149-178
    • Arya, D.P.1
  • 4
    • 47149091638 scopus 로고    scopus 로고
    • Molecular recognition of a DNA:RNA hybrid: sub-nanomolar binding by a neomycin-methidium conjugate
    • Shaw N.N., Xi H., and Arya D.P. Molecular recognition of a DNA:RNA hybrid: sub-nanomolar binding by a neomycin-methidium conjugate. Bioorg. Med. Chem. Lett. 18 (2008) 4142-4145
    • (2008) Bioorg. Med. Chem. Lett. , vol.18 , pp. 4142-4145
    • Shaw, N.N.1    Xi, H.2    Arya, D.P.3
  • 5
    • 0034605181 scopus 로고    scopus 로고
    • DNA triple helix stabilization by aminoglycoside antibiotics
    • Arya D.P., and Coffee Jr. R.L. DNA triple helix stabilization by aminoglycoside antibiotics. Bioorg. Med. Chem. Lett. 10 (2000) 1897-1899
    • (2000) Bioorg. Med. Chem. Lett. , vol.10 , pp. 1897-1899
    • Arya, D.P.1    Coffee Jr., R.L.2
  • 6
    • 0034833770 scopus 로고    scopus 로고
    • Aminoglycosides-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin
    • Arya D.P., Coffee Jr. R.L., Willis B., and Abramovitch A.I. Aminoglycosides-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin. J. Am. Chem. Soc. 123 (2001) 5385-5395
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5385-5395
    • Arya, D.P.1    Coffee Jr., R.L.2    Willis, B.3    Abramovitch, A.I.4
  • 7
  • 8
    • 0034833770 scopus 로고    scopus 로고
    • Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin
    • Arya D.P., Coffee Jr. R.L., Willis B., and Abramovitch A.I. Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin. J. Am. Chem. Soc. 123 (2001) 5385-5395
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5385-5395
    • Arya, D.P.1    Coffee Jr., R.L.2    Willis, B.3    Abramovitch, A.I.4
  • 9
    • 0037033436 scopus 로고    scopus 로고
    • Neomycin-Pyrene conjugate: dual modes of triplex recognition
    • Xue L., Charles I., and Arya D.P. Neomycin-Pyrene conjugate: dual modes of triplex recognition. Chem. Commun. (2002) 70-71
    • (2002) Chem. Commun. , pp. 70-71
    • Xue, L.1    Charles, I.2    Arya, D.P.3
  • 10
    • 0037033436 scopus 로고    scopus 로고
    • Pyrene-neomycin conjugate: dual recognition of a DNA triple helix
    • Xue L., Charles I., and Arya D.P. Pyrene-neomycin conjugate: dual recognition of a DNA triple helix. Chem. Commun. (Cambridge, England) 1 (2002) 70-71
    • (2002) Chem. Commun. (Cambridge, England) , Issue.1 , pp. 70-71
    • Xue, L.1    Charles, I.2    Arya, D.P.3
  • 11
    • 0037029803 scopus 로고    scopus 로고
    • Synthesis of aminoglycoside-DNA conjugates
    • Charles I., Xue L., and Arya D.P. Synthesis of aminoglycoside-DNA conjugates. Bioorg. Med. Chem. Lett. 12 (2002) 1259-1262
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 1259-1262
    • Charles, I.1    Xue, L.2    Arya, D.P.3
  • 12
    • 0041932005 scopus 로고    scopus 로고
    • Aminoglycoside preference is for A-form nucleic acids, not just RNA: results from a competition dialysis study
    • Arya D.P., Xue L., and Willis B. Aminoglycoside preference is for A-form nucleic acids, not just RNA: results from a competition dialysis study. J. Am. Chem. Soc. 125 (2003) 10148-10149
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 10148-10149
    • Arya, D.P.1    Xue, L.2    Willis, B.3
  • 13
    • 0038682830 scopus 로고    scopus 로고
    • Combining the best in triplex recognition: Synthesis and nucleic acid binding of a BQQ-neomycin conjugate
    • doi:10.1021/ja034241t
    • Arya, D.P., Xue, L. and Tennant, P. (2003) Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate. J. Am. Chem. Soc. 125, 8070-8071. doi:10.1021/ja034241t.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 8070-8071
    • Arya, D.P.1    Xue, L.2    Tennant, P.3
  • 14
    • 0141919831 scopus 로고    scopus 로고
    • Arya, D.P. and Willis, B. (2003) Reaching into the major groove of B-DNA: synthesis and nucleic acid binding of a neomycin-Hoechst 33258 conjugate. J. Am. Chem. Soc. 125, 12398-12399. doi:10.1021/ja036742k.
    • Arya, D.P. and Willis, B. (2003) Reaching into the major groove of B-DNA: synthesis and nucleic acid binding of a neomycin-Hoechst 33258 conjugate. J. Am. Chem. Soc. 125, 12398-12399. doi:10.1021/ja036742k.
  • 16
    • 8544250602 scopus 로고    scopus 로고
    • From triplex to B-form duplex stabilization: reversal of target selectivity by aminoglycoside dimers
    • Arya D.P., Coffee R.L., and Xue L. From triplex to B-form duplex stabilization: reversal of target selectivity by aminoglycoside dimers. Bioorg. Med. Chem. Lett. 14 (2004) 4643-4646
    • (2004) Bioorg. Med. Chem. Lett. , vol.14 , pp. 4643-4646
    • Arya, D.P.1    Coffee, R.L.2    Xue, L.3
  • 17
    • 22144496837 scopus 로고    scopus 로고
    • Recognition of triple helical nucleic acids by aminoglycosides
    • Xi H., and Arya D.P. Recognition of triple helical nucleic acids by aminoglycosides. Curr. Med. Chem. Anticancer Agents 5 (2005) 327-338
    • (2005) Curr. Med. Chem. Anticancer Agents , vol.5 , pp. 327-338
    • Xi, H.1    Arya, D.P.2
  • 18
    • 33646015109 scopus 로고    scopus 로고
    • Major groove recognition of DNA by carbohydrates
    • Willis B., and Arya D.P. Major groove recognition of DNA by carbohydrates. Curr. Org. Chem. 10 (2006) 663-673
    • (2006) Curr. Org. Chem. , vol.10 , pp. 663-673
    • Willis, B.1    Arya, D.P.2
  • 19
    • 33748672701 scopus 로고    scopus 로고
    • Recognition of B-DNA by neomycin-Hoechst 33258 conjugates
    • Willis B., and Arya D.P. Recognition of B-DNA by neomycin-Hoechst 33258 conjugates. Biochemistry (NY) 45 (2006) 10217-10232
    • (2006) Biochemistry (NY) , vol.45 , pp. 10217-10232
    • Willis, B.1    Arya, D.P.2
  • 20
    • 33846463039 scopus 로고    scopus 로고
    • Sequence-specific targeting of RNA with an oligonucleotide-neomycin conjugate
    • Charles I., Xi H., and Arya D.P. Sequence-specific targeting of RNA with an oligonucleotide-neomycin conjugate. Bioconjug. Chem. 18 (2007) 160-169
    • (2007) Bioconjug. Chem. , vol.18 , pp. 160-169
    • Charles, I.1    Xi, H.2    Arya, D.P.3
  • 21
    • 2142826526 scopus 로고    scopus 로고
    • An efficient system for cap- and poly(A)-dependent translation in vitro
    • Svitkin Y.V., and Sonenberg N. An efficient system for cap- and poly(A)-dependent translation in vitro. Meth. Mol. Biol. 257 (2004) 155-170
    • (2004) Meth. Mol. Biol. , vol.257 , pp. 155-170
    • Svitkin, Y.V.1    Sonenberg, N.2
  • 22
    • 12644303224 scopus 로고    scopus 로고
    • Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G
    • Tarun Jr. S.Z., and Sachs A.B. Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J. 15 (1996) 7168-7177
    • (1996) EMBO J. , vol.15 , pp. 7168-7177
    • Tarun Jr., S.Z.1    Sachs, A.B.2
  • 23
    • 0029857320 scopus 로고    scopus 로고
    • Cell-cycle related regulation of poly(A) polymerase by phosphorylation
    • Colgan D.F., Murthy K.G., Prives C., and Manley J.L. Cell-cycle related regulation of poly(A) polymerase by phosphorylation. Nature 384 (1996) 282-285
    • (1996) Nature , vol.384 , pp. 282-285
    • Colgan, D.F.1    Murthy, K.G.2    Prives, C.3    Manley, J.L.4
  • 24
    • 0032889314 scopus 로고    scopus 로고
    • Cleavage of poly(A)-binding protein by enterovirus proteases concurrent with inhibition of translation in vitro
    • Joachims M., Breugel P.C.V., and Lloyd R.E. Cleavage of poly(A)-binding protein by enterovirus proteases concurrent with inhibition of translation in vitro. J. Virol. 73 (1999) 718-727
    • (1999) J. Virol. , vol.73 , pp. 718-727
    • Joachims, M.1    Breugel, P.C.V.2    Lloyd, R.E.3
  • 26
    • 0034935020 scopus 로고    scopus 로고
    • Identification and functional characterization of neo-poly(A) polymerase, an RNA processing enzyme overexpressed in human tumors
    • Topalian S.L., Kaneko S., Gonzales M.I., Bond G.L., Ward Y., and Manley J.L. Identification and functional characterization of neo-poly(A) polymerase, an RNA processing enzyme overexpressed in human tumors. Mol. Cell. Biol. 21 (2001) 5614-5623
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 5614-5623
    • Topalian, S.L.1    Kaneko, S.2    Gonzales, M.I.3    Bond, G.L.4    Ward, Y.5    Manley, J.L.6
  • 27
    • 0034306990 scopus 로고    scopus 로고
    • Polyadenylate polymerase enzymatic activity in mammary tumor cytosols: a new independent prognostic marker in primary breast cancer
    • Scorilas A., Talieri M., Ardavanis A., Courtis N., Dimitriadis E., Yotis J., Tsiapalis C.M., and Trangas T. Polyadenylate polymerase enzymatic activity in mammary tumor cytosols: a new independent prognostic marker in primary breast cancer. Cancer Res. 60 (2000) 542733
    • (2000) Cancer Res. , vol.60 , pp. 542733
    • Scorilas, A.1    Talieri, M.2    Ardavanis, A.3    Courtis, N.4    Dimitriadis, E.5    Yotis, J.6    Tsiapalis, C.M.7    Trangas, T.8
  • 28
    • 0019398073 scopus 로고
    • The role of the poly(A) sequence in mammalian messenger RNA
    • Brawerman G. The role of the poly(A) sequence in mammalian messenger RNA. CRC Crit. Rev. Biochem. 10 (1981) 1-38
    • (1981) CRC Crit. Rev. Biochem. , vol.10 , pp. 1-38
    • Brawerman, G.1
  • 29
    • 34848888610 scopus 로고    scopus 로고
    • Inhibition of poly(A) polymerase by aminoglycosides
    • Thuresson A.C., Kirsebom L.A., and Virtanen A. Inhibition of poly(A) polymerase by aminoglycosides. Biochimie 89 (2007) 1221-1227
    • (2007) Biochimie , vol.89 , pp. 1221-1227
    • Thuresson, A.C.1    Kirsebom, L.A.2    Virtanen, A.3
  • 30
    • 0036847881 scopus 로고    scopus 로고
    • Inhibition of Klenow DNA polymerase and poly(A)-specific ribonuclease by aminoglycosides
    • Ren Y.-., Martinez J., Kirsebom L.A., and Virtanen A. Inhibition of Klenow DNA polymerase and poly(A)-specific ribonuclease by aminoglycosides. RNA 8 (2002) 1393-1400
    • (2002) RNA , vol.8 , pp. 1393-1400
    • Ren, Y.-.1    Martinez, J.2    Kirsebom, L.A.3    Virtanen, A.4
  • 31
    • 0017291166 scopus 로고
    • Effect of cell proliferation on levels and diversity of poly(A)-containing mRNA
    • Getz M.J., Elder P.K., Benz Jr. E.W., Stephens R.E., and Moses H.L. Effect of cell proliferation on levels and diversity of poly(A)-containing mRNA. Cell 7 (1976) 255
    • (1976) Cell , vol.7 , pp. 255
    • Getz, M.J.1    Elder, P.K.2    Benz Jr., E.W.3    Stephens, R.E.4    Moses, H.L.5
  • 32
    • 33750167675 scopus 로고    scopus 로고
    • Molecular aspects on the specific interaction of cytotoxic plant alkaloid palmatine to poly(A)
    • Giri P., Hossain M., and Kumar G.S. Molecular aspects on the specific interaction of cytotoxic plant alkaloid palmatine to poly(A). Int. J. Biol. Macromol. 39 (2006) 210-221
    • (2006) Int. J. Biol. Macromol. , vol.39 , pp. 210-221
    • Giri, P.1    Hossain, M.2    Kumar, G.S.3
  • 33
    • 33644988048 scopus 로고    scopus 로고
    • RNA specific molecules: cytotoxic plant alkaloid palmatine binds strongly to poly(A)
    • Giri P., Hossain M., and Kumar G.S. RNA specific molecules: cytotoxic plant alkaloid palmatine binds strongly to poly(A). Bioorg. Med. Chem. Lett. 16 (2006) 2364-2368
    • (2006) Bioorg. Med. Chem. Lett. , vol.16 , pp. 2364-2368
    • Giri, P.1    Hossain, M.2    Kumar, G.S.3
  • 34
    • 24144502053 scopus 로고    scopus 로고
    • Molecular recognition of nucleic acids: coralyne binds strongly to poly(A)
    • Feifei Xing G.S., Jinsong R., Chaires J.B., and Xiaogang Q. Molecular recognition of nucleic acids: coralyne binds strongly to poly(A). FEBS Lett. 579 (2005) 5035-5039
    • (2005) FEBS Lett. , vol.579 , pp. 5035-5039
    • Feifei Xing, G.S.1    Jinsong, R.2    Chaires, J.B.3    Xiaogang, Q.4
  • 35
    • 9644265292 scopus 로고    scopus 로고
    • Berberine, a strong polyriboadenylic acid binding plant alkaloid: spectroscopic, viscometric, and thermodynamic study
    • Yadav R.C., Kumar G.S., Bhadra K., Giri P., Sinha R., Pal S., and Maiti M. Berberine, a strong polyriboadenylic acid binding plant alkaloid: spectroscopic, viscometric, and thermodynamic study. Bioorg. Med. Chem. 13 (2005) 165-174
    • (2005) Bioorg. Med. Chem. , vol.13 , pp. 165-174
    • Yadav, R.C.1    Kumar, G.S.2    Bhadra, K.3    Giri, P.4    Sinha, R.5    Pal, S.6    Maiti, M.7
  • 36
    • 11844281461 scopus 로고    scopus 로고
    • Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms
    • Kahvejian A., Svitkin Y.V., Sukarieh R., M'Boutchou M.N., and Sonenberg N. Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes Dev. 19 (2005) 104-113
    • (2005) Genes Dev. , vol.19 , pp. 104-113
    • Kahvejian, A.1    Svitkin, Y.V.2    Sukarieh, R.3    M'Boutchou, M.N.4    Sonenberg, N.5
  • 37
    • 0035787721 scopus 로고    scopus 로고
    • The mRNA closed-loop model: the function of PABP and PABP-interacting proteins in mRNA translation
    • Kahvejian A., Roy G., and Sonenberg N. The mRNA closed-loop model: the function of PABP and PABP-interacting proteins in mRNA translation. Cold Spring Harb. Symp. Quant. Biol. 66 (2001) 293-300
    • (2001) Cold Spring Harb. Symp. Quant. Biol. , vol.66 , pp. 293-300
    • Kahvejian, A.1    Roy, G.2    Sonenberg, N.3


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