메뉴 건너뛰기




Volumn 49, Issue 45, 2010, Pages 9891-9903

Aminoglycoside binding to oxytricha nova telomeric DNA

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDES; ASSOCIATION CONSTANT; BINDING RATIO; CANCER CELLS; CANCER TREATMENT; CD SIGNALS; COMPUTATIONAL DOCKINGS; DNA INTERACTION; DNA STRUCTURE; DRUG DESIGN; FLUORESCENT PROBES; G-QUADRUPLEXES; ISOTHERMAL TITRATION CALORIMETRY; LOGICAL DESIGN; NUCLEIC ACID STRUCTURE; STRUCTURAL FORM; TELOMERASE ACTIVITY; TELOMERIC DNA;

EID: 78149438102     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi101517e     Document Type: Article
Times cited : (60)

References (86)
  • 1
    • 0031727943 scopus 로고    scopus 로고
    • G-Quadruplex DNA: A Target for Drug Design
    • Mergny, J. L. and Helene, C. (1998) G-Quadruplex DNA: A Target for Drug Design Nat. Med. (N. Y., NY, U. S.) 4, 1366-1367
    • (1998) Nat. Med. (N. Y., NY, U. S.) , vol.4 , pp. 1366-1367
    • Mergny, J.L.1    Helene, C.2
  • 2
    • 0034578478 scopus 로고    scopus 로고
    • G-Quadruplexes as Therapeutic Targets
    • Neidle, S. and Read, M. A. (2000) G-Quadruplexes as Therapeutic Targets Biopolymers 56, 195-208
    • (2000) Biopolymers , vol.56 , pp. 195-208
    • Neidle, S.1    Read, M.A.2
  • 3
    • 0035352382 scopus 로고    scopus 로고
    • DNA Tetraplex-Binding Drugs Structure-Selective Targeting is Critical for Antitumour Telomerase Inhibition
    • Perry, P. J. and Jenkins, T. C. (2001) DNA Tetraplex-Binding Drugs Structure-Selective Targeting is Critical for Antitumour Telomerase Inhibition Mini Rev. Med. Chem. 1, 31
    • (2001) Mini Rev. Med. Chem. , vol.1 , pp. 31
    • Perry, P.J.1    Jenkins, T.C.2
  • 5
    • 33847372902 scopus 로고    scopus 로고
    • Physiological Relevance of Telomeric G-Quadruplex Formation: A Potential Drug Target
    • Oganesian, L. and Bryan, T. M. (2007) Physiological Relevance of Telomeric G-Quadruplex Formation: A Potential Drug Target BioEssays 29, 155-165
    • (2007) BioEssays , vol.29 , pp. 155-165
    • Oganesian, L.1    Bryan, T.M.2
  • 6
    • 34250310936 scopus 로고    scopus 로고
    • Telomerase and Telomere Dynamics in Ageing and Cancer: Current Status and Future Directions
    • Camarena, F. S., Serral, G. C., and Santalo, F. S. (2007) Telomerase and Telomere Dynamics in Ageing and Cancer: Current Status and Future Directions Clin. Transl. Oncol. 9, 145-154
    • (2007) Clin. Transl. Oncol. , vol.9 , pp. 145-154
    • Camarena, F.S.1    Serral, G.C.2    Santalo, F.S.3
  • 7
    • 0036169550 scopus 로고    scopus 로고
    • Telomerase and Telomeres: From Basic Biology to Cancer Treatment
    • Helder, M. N., Wisman, G. B. A., and Van der, Z. (2002) Telomerase and Telomeres: From Basic Biology to Cancer Treatment Cancer Invest. 20, 82-101
    • (2002) Cancer Invest. , vol.20 , pp. 82-101
    • Helder, M.N.1    Wisman, G.B.A.2    Van Der, Z.3
  • 8
    • 0035262502 scopus 로고    scopus 로고
    • Telomerase: Biology and Phase i Trials
    • Kelland, L. R. (2001) Telomerase: Biology and Phase I Trials Lancet Oncol. 2, 95-102
    • (2001) Lancet Oncol. , vol.2 , pp. 95-102
    • Kelland, L.R.1
  • 9
    • 34548857357 scopus 로고    scopus 로고
    • Targeting the Limitless Replicative Potential of Cancer: The Telomerase/Telomere Pathway
    • Kelland, L. (2007) Targeting the Limitless Replicative Potential of Cancer: The Telomerase/Telomere Pathway Clin. Cancer Res. 13, 4960-4963
    • (2007) Clin. Cancer Res. , vol.13 , pp. 4960-4963
    • Kelland, L.1
  • 10
    • 33745849998 scopus 로고    scopus 로고
    • The Structure and Function of Telomerase Reverse Transcriptase
    • Autexier, C. and Lue, N. F. (2006) The Structure and Function of Telomerase Reverse Transcriptase Annu. Rev. Biochem. 75, 493-517
    • (2006) Annu. Rev. Biochem. , vol.75 , pp. 493-517
    • Autexier, C.1    Lue, N.F.2
  • 11
    • 39049147645 scopus 로고    scopus 로고
    • A Hitchhiker's Guide to G-Quadruplex Ligands
    • Monchaud, D. and Teulade-Fichou, M. P. (2008) A Hitchhiker's Guide to G-Quadruplex Ligands Org. Biomol. Chem. 6, 627-636
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 627-636
    • Monchaud, D.1    Teulade-Fichou, M.P.2
  • 13
    • 37549027538 scopus 로고    scopus 로고
    • Fundamentals of Quadruplex Structures
    • (Neidle, S. and Balasubramanian, S., Eds.) Royal Society of Chemistry, Cambridge, U.K.
    • Parkinson, G. N. (2006) Fundamentals of Quadruplex Structures, in Quadruplex Nucleic Acids (Neidle, S. and Balasubramanian, S., Eds.) pp 1 - 30, Royal Society of Chemistry, Cambridge, U.K.
    • (2006) Quadruplex Nucleic Acids , pp. 1
    • Parkinson, G.N.1
  • 14
    • 34447531353 scopus 로고    scopus 로고
    • The Role of Cations in Determining Quadruplex Structure and Stability
    • (Neidle, S. and Balasubramanian, S., Eds.) The Royal Society of Chemistry, Cambridge, UK
    • Hud, N. V. and Plavec, J. (2006) The Role of Cations in Determining Quadruplex Structure and Stability, in Quadruplex Nucleic Acids (Neidle, S. and Balasubramanian, S., Eds.) pp 100 - 130, The Royal Society of Chemistry, Cambridge, UK.
    • (2006) Quadruplex Nucleic Acids , pp. 100-130
    • Hud, N.V.1    Plavec, J.2
  • 16
    • 33747168762 scopus 로고    scopus 로고
    • A Phenol Quaternary Ammonium Porphyrin as a Potent Telomerase Inhibitor by Selective Interaction with Quadruplex DNA
    • Ping Wang, L. R., He, Hanping, Liang, Feng, Zhou, Xiang, and Tan, Zheng (2006) A Phenol Quaternary Ammonium Porphyrin as a Potent Telomerase Inhibitor by Selective Interaction with Quadruplex DNA ChemBioChem 7, 1155-1159
    • (2006) ChemBioChem , vol.7 , pp. 1155-1159
    • Ping Wang, L.R.1    He, H.2    Liang, F.3    Zhou, X.4    Tan, Z.5
  • 18
    • 33744772345 scopus 로고    scopus 로고
    • A Spectroscopic Study on the Interactions of Porphyrin with G-Quadruplex DNAs
    • Wei, C., Jia, G., Yuan, J., Feng, Z., and Li, C. (2006) A Spectroscopic Study on the Interactions of Porphyrin with G-Quadruplex DNAs Biochemistry (New York) 45, 6681-6691
    • (2006) Biochemistry (New York) , vol.45 , pp. 6681-6691
    • Wei, C.1    Jia, G.2    Yuan, J.3    Feng, Z.4    Li, C.5
  • 20
    • 38049007426 scopus 로고    scopus 로고
    • Amide Bond Direction Modulates G-Quadruplex Recognition and Telomerase Inhibition by 2,6 and 2,7 Bis-Substituted Anthracenedione Derivatives
    • Zagotto, G., Sissi, C., Moro, S., Ben, D. D., Parkinson, G. N., Fox, K. R., Neidle, S., and Palumbo, M. (2008) Amide Bond Direction Modulates G-Quadruplex Recognition and Telomerase Inhibition by 2,6 and 2,7 Bis-Substituted Anthracenedione Derivatives Bioorg. Med. Chem. 16, 354-361
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 354-361
    • Zagotto, G.1    Sissi, C.2    Moro, S.3    Ben, D.D.4    Parkinson, G.N.5    Fox, K.R.6    Neidle, S.7    Palumbo, M.8
  • 23
    • 34547607293 scopus 로고    scopus 로고
    • Cationic Corrole Derivatives: A New Family of G-Quadruplex Inducing and Stabilizing Ligands
    • Fu, B., Huang, J., Ren, L., Weng, X., Zhou, Y., Du, Y., Wu, X., Zhou, X., and Yang, G. (2007) Cationic Corrole Derivatives: A New Family of G-Quadruplex Inducing and Stabilizing Ligands Chem. Commun., 3264-3266
    • (2007) Chem. Commun. , pp. 3264-3266
    • Fu, B.1    Huang, J.2    Ren, L.3    Weng, X.4    Zhou, Y.5    Du, Y.6    Wu, X.7    Zhou, X.8    Yang, G.9
  • 26
    • 0038268053 scopus 로고    scopus 로고
    • Specific Interactions of Distamycin with G-Quadruplex DNA
    • Cocco, M. J., Hanakahi, L. A., Huber, M. D., and Maizels, N. (2003) Specific Interactions of Distamycin with G-Quadruplex DNA Nucleic Acids Res. 31, 2944-2951
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2944-2951
    • Cocco, M.J.1    Hanakahi, L.A.2    Huber, M.D.3    Maizels, N.4
  • 28
    • 0141458938 scopus 로고    scopus 로고
    • Hoechst 33258 Binds to G-Quadruplex in the Promoter Region of Human c-Myc
    • Maiti, S., Chaudhury, N. K., and Chowdhury, S. (2003) Hoechst 33258 Binds to G-Quadruplex in the Promoter Region of Human c-Myc Biochem. Biophys. Res. Commun. 310, 505-512
    • (2003) Biochem. Biophys. Res. Commun. , vol.310 , pp. 505-512
    • Maiti, S.1    Chaudhury, N.K.2    Chowdhury, S.3
  • 29
    • 70450158916 scopus 로고    scopus 로고
    • Tandem Application of Virtual Screening and NMR Experiments in the Discovery of Brand New DNA Quadruplex Groove Binders
    • Cosconati, S., Marinelli, L., Trotta, R., Virno, A., Mayol, L., Novellino, E., Olson, A. J., and Randazzo, A. (2009) Tandem Application of Virtual Screening and NMR Experiments in the Discovery of Brand New DNA Quadruplex Groove Binders J. Am. Chem. Soc. 131, 16336-16337
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 16336-16337
    • Cosconati, S.1    Marinelli, L.2    Trotta, R.3    Virno, A.4    Mayol, L.5    Novellino, E.6    Olson, A.J.7    Randazzo, A.8
  • 30
    • 33748663132 scopus 로고    scopus 로고
    • Aminoglycoside-Nucleic Acid Interactions: The Case for Neomycin
    • Arya, D. P. (2005) Aminoglycoside-Nucleic Acid Interactions: The Case for Neomycin Top. Curr. Chem. 253, 149-178
    • (2005) Top. Curr. Chem. , vol.253 , pp. 149-178
    • Arya, D.P.1
  • 31
    • 33646015109 scopus 로고    scopus 로고
    • Major Groove Recognition of DNA by Carbohydrates
    • Willis, B. and Arya, D. P. (2006) Major Groove Recognition of DNA by Carbohydrates Curr. Org. Chem. 10, 663-673
    • (2006) Curr. Org. Chem. , vol.10 , pp. 663-673
    • Willis, B.1    Arya, D.P.2
  • 32
    • 33646862380 scopus 로고    scopus 로고
    • An Expanding View of Aminoglycoside-Nucleic Acid Recognition
    • Willis, B. and Arya, D. P. (2006) An Expanding View of Aminoglycoside-Nucleic Acid Recognition Adv. Carbohydr. Chem. Biochem. 60, 251-302
    • (2006) Adv. Carbohydr. Chem. Biochem. , vol.60 , pp. 251-302
    • Willis, B.1    Arya, D.P.2
  • 33
    • 67649378395 scopus 로고    scopus 로고
    • Molecular Recognition of Single-Stranded RNA: Neomycin Binding to Poly(A)
    • Xi, H., Gray, D., Kumar, S., and Arya, D. P. (2009) Molecular Recognition of Single-Stranded RNA: Neomycin Binding to Poly(A) FEBS Lett. 583, 2269-2275
    • (2009) FEBS Lett. , vol.583 , pp. 2269-2275
    • Xi, H.1    Gray, D.2    Kumar, S.3    Arya, D.P.4
  • 34
    • 0034833770 scopus 로고    scopus 로고
    • Aminoglycoside-Nucleic Acid Interactions: Remarkable Stabilization of DNA and RNA Triple Helices by Neomycin
    • Arya, D. P., Coffee, R. L., Jr., Willis, B., and Abramovitch, A. I. (2001) Aminoglycoside-Nucleic Acid Interactions: Remarkable Stabilization of DNA and RNA Triple Helices by Neomycin J. Am. Chem. Soc. 123, 5385-5395
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5385-5395
    • Arya, D.P.1    Coffee Jr., R.L.2    Willis, B.3    Abramovitch, A.I.4
  • 35
    • 0038682830 scopus 로고    scopus 로고
    • Combining the Best in Triplex Recognition: Synthesis and Nucleic Acid Binding of a BQQ-Neomycin Conjugate
    • Arya, D. P., Xue, L., and Tennant, P. (2003) Combining the Best in Triplex Recognition: Synthesis and Nucleic Acid Binding of a BQQ-Neomycin Conjugate J. Am. Chem. Soc. 125, 8070-8071
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 8070-8071
    • Arya, D.P.1    Xue, L.2    Tennant, P.3
  • 36
    • 0037033436 scopus 로고    scopus 로고
    • Pyrene-Neomycin Conjugate: Dual Recognition of a DNA Triple Helix
    • Xue, L., Charles, I., and Arya, D. P. (2002) Pyrene-Neomycin Conjugate: Dual Recognition of a DNA Triple Helix Chem. Commun. 1, 70-71
    • (2002) Chem. Commun. , vol.1 , pp. 70-71
    • Xue, L.1    Charles, I.2    Arya, D.P.3
  • 37
    • 0035823839 scopus 로고    scopus 로고
    • Neomycin-Induced Hybrid Triplex Formation
    • Arya, D. P., Coffee, R. L., Jr., and Charles, I. (2001) Neomycin-Induced Hybrid Triplex Formation J. Am. Chem. Soc. 123, 11093-11094
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 11093-11094
    • Arya, D.P.1    Coffee Jr., R.L.2    Charles, I.3
  • 38
    • 0034605181 scopus 로고    scopus 로고
    • DNA Triple Helix Stabilization by Aminoglycoside Antibiotics
    • Arya, D. P. and Coffee, R. L., Jr. (2000) DNA Triple Helix Stabilization by Aminoglycoside Antibiotics Bioorg. Med. Chem. Lett. 10, 1897-1899
    • (2000) Bioorg. Med. Chem. Lett. , vol.10 , pp. 1897-1899
    • Arya, D.P.1    Coffee Jr., R.L.2
  • 39
    • 77954195336 scopus 로고    scopus 로고
    • Probing the Recognition Surface of a DNA Triplex: Binding Studies with Intercalator-Neomycin Conjugates
    • Xue, L., Xi, H., Kumar, S., Gray, D., Davis, E., Hamilton, P., Skriba, M., and Arya, D. P. (2010) Probing the Recognition Surface of a DNA Triplex: Binding Studies with Intercalator-Neomycin Conjugates Biochemistry (New York) 49, 5540-5552
    • (2010) Biochemistry (New York) , vol.49 , pp. 5540-5552
    • Xue, L.1    Xi, H.2    Kumar, S.3    Gray, D.4    Davis, E.5    Hamilton, P.6    Skriba, M.7    Arya, D.P.8
  • 40
    • 22144496837 scopus 로고    scopus 로고
    • Recognition of Triple Helical Nucleic Acids by Aminoglycosides
    • Xi, H. and Arya, D. P. (2005) Recognition of Triple Helical Nucleic Acids by Aminoglycosides Curr. Med. Chem. Anticancer Agents 5, 327-338
    • (2005) Curr. Med. Chem. Anticancer Agents , vol.5 , pp. 327-338
    • Xi, H.1    Arya, D.P.2
  • 41
    • 45849138859 scopus 로고    scopus 로고
    • Recognition of the Unique Structure of DNA:RNA Hybrids
    • Shaw, N. N. and Arya, D. P. (2008) Recognition of the Unique Structure of DNA:RNA Hybrids Biochimie 90, 1026-1039
    • (2008) Biochimie , vol.90 , pp. 1026-1039
    • Shaw, N.N.1    Arya, D.P.2
  • 42
    • 47149091638 scopus 로고    scopus 로고
    • Molecular Recognition of a DNA:RNA Hybrid: Sub-Nanomolar Binding by a Neomycin-Methidium Conjugate
    • Shaw, N. N., Xi, H., and Arya, D. P. (2008) Molecular Recognition of a DNA:RNA Hybrid: Sub-Nanomolar Binding by a Neomycin-Methidium Conjugate Bioorg. Med. Chem. Lett. 18, 4142-4145
    • (2008) Bioorg. Med. Chem. Lett. , vol.18 , pp. 4142-4145
    • Shaw, N.N.1    Xi, H.2    Arya, D.P.3
  • 44
    • 0041932005 scopus 로고    scopus 로고
    • Aminoglycoside (Neomycin) Preference is for A-Form Nucleic Acids, Not just RNA: Results from a Competition Dialysis Study
    • Arya, D. P., Xue, L., and Willis, B. (2003) Aminoglycoside (Neomycin) Preference is for A-Form Nucleic Acids, Not just RNA: Results from a Competition Dialysis Study J. Am. Chem. Soc. 125, 10148-10149
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 10148-10149
    • Arya, D.P.1    Xue, L.2    Willis, B.3
  • 45
    • 0141919831 scopus 로고    scopus 로고
    • Reaching into the Major Groove of B-DNA: Synthesis and Nucleic Acid Binding of a Neomycin-Hoechst 33258 Conjugate
    • Arya, D. P. and Willis, B. (2003) Reaching into the Major Groove of B-DNA: Synthesis and Nucleic Acid Binding of a Neomycin-Hoechst 33258 Conjugate J. Am. Chem. Soc. 125, 12398-12399
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 12398-12399
    • Arya, D.P.1    Willis, B.2
  • 46
    • 33748672701 scopus 로고    scopus 로고
    • Recognition of B-DNA by Neomycin-Hoechst 33258 Conjugates
    • Willis, B. and Arya, D. P. (2006) Recognition of B-DNA by Neomycin-Hoechst 33258 Conjugates Biochemistry (New York) 45, 10217-10232
    • (2006) Biochemistry (New York) , vol.45 , pp. 10217-10232
    • Willis, B.1    Arya, D.P.2
  • 48
    • 74949121427 scopus 로고    scopus 로고
    • Triple Recognition of B-DNA by a Neomycin-Hoechst 33258-Pyrene Conjugate
    • Willis, B. and Arya, D. P. (2010) Triple Recognition of B-DNA by a Neomycin-Hoechst 33258-Pyrene Conjugate Biochemistry 49, 452-469
    • (2010) Biochemistry , vol.49 , pp. 452-469
    • Willis, B.1    Arya, D.P.2
  • 49
    • 8544250602 scopus 로고    scopus 로고
    • From Triplex to B-Form Duplex Stabilization: Reversal of Target Selectivity by Aminoglycoside Dimers
    • Arya, D. P., Coffee, R. L., Jr., and Xue, L. (2004) From Triplex to B-Form Duplex Stabilization: Reversal of Target Selectivity by Aminoglycoside Dimers Bioorg. Med. Chem. Lett. 14, 4643-4646
    • (2004) Bioorg. Med. Chem. Lett. , vol.14 , pp. 4643-4646
    • Arya, D.P.1    Coffee Jr., R.L.2    Xue, L.3
  • 50
    • 20644459244 scopus 로고    scopus 로고
    • Neomycin Improves Cationic Lipid-Mediated Transfection of DNA in Human Cells
    • Napoli, S., Carbone, G. M., Catapano, C. V., Shaw, N., and Arya, D. P. (2005) Neomycin Improves Cationic Lipid-Mediated Transfection of DNA in Human Cells Bioorg. Med. Chem. Lett. 15, 3467-3469
    • (2005) Bioorg. Med. Chem. Lett. , vol.15 , pp. 3467-3469
    • Napoli, S.1    Carbone, G.M.2    Catapano, C.V.3    Shaw, N.4    Arya, D.P.5
  • 51
    • 33846463039 scopus 로고    scopus 로고
    • Sequence-Specific Targeting of RNA with an Oligonucleotide-Neomycin Conjugate
    • Charles, I., Xi, H., and Arya, D. P. (2007) Sequence-Specific Targeting of RNA with an Oligonucleotide-Neomycin Conjugate Bioconjugate Chem. 18, 160-169
    • (2007) Bioconjugate Chem. , vol.18 , pp. 160-169
    • Charles, I.1    Xi, H.2    Arya, D.P.3
  • 52
    • 27844606478 scopus 로고    scopus 로고
    • Synthesis of Neomycin-DNA/peptide Nucleic Acid Conjugates
    • Charles, I. and Arya, D. P. (2005) Synthesis of Neomycin-DNA/peptide Nucleic Acid Conjugates J. Carbohydr. Chem. 24, 145-160
    • (2005) J. Carbohydr. Chem. , vol.24 , pp. 145-160
    • Charles, I.1    Arya, D.P.2
  • 53
    • 0037029803 scopus 로고    scopus 로고
    • Synthesis of Aminoglycoside-DNA Conjugates
    • Charles, I., Xue, L., and Arya, D. P. (2002) Synthesis of Aminoglycoside-DNA Conjugates Bioorg. Med. Chem. Lett. 12, 1259-1262
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 1259-1262
    • Charles, I.1    Xue, L.2    Arya, D.P.3
  • 54
    • 0026554887 scopus 로고
    • Quadruplex Structure of Oxytricha Telomeric DNA Oligonucleotides
    • Smith, F. W. and Feigon, J. (1992) Quadruplex Structure of Oxytricha Telomeric DNA Oligonucleotides Nature 356, 164-168
    • (1992) Nature , vol.356 , pp. 164-168
    • Smith, F.W.1    Feigon, J.2
  • 55
    • 0037423728 scopus 로고    scopus 로고
    • Structure of a G-quadruplex -Ligand Complex
    • Haider, S. M., Parkinson, G. N., and Neidle, S. (2003) Structure of a G-quadruplex -Ligand Complex J. Mol. Biol. 326, 117-125
    • (2003) J. Mol. Biol. , vol.326 , pp. 117-125
    • Haider, S.M.1    Parkinson, G.N.2    Neidle, S.3
  • 57
    • 0026951903 scopus 로고
    • Gradient-Tailored Excitation for Single-Quantum NMR Spectroscopy of Aqueous Solutions
    • Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-Tailored Excitation for Single-Quantum NMR Spectroscopy of Aqueous Solutions J. Biomol. NMR 2, 661-665
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 58
    • 78149461284 scopus 로고    scopus 로고
    • SPARKY 3, University of California, San Francisco.
    • Goddard, T. D. and Kneller, D. G. SPARKY 3, University of California, San Francisco.
    • Goddard, T.D.1    Kneller, D.G.2
  • 59
    • 0027240171 scopus 로고
    • Strand Orientation in the DNA Quadruplex Formed from the Oxytricha Telomere Repeat Oligonucleotide d(G4T4G4) in Solution
    • Smith, F. W. and Feigon, J. (1993) Strand Orientation in the DNA Quadruplex Formed from the Oxytricha Telomere Repeat Oligonucleotide d(G4T4G4) in Solution Biochemistry (New York) 32, 8682-8692
    • (1993) Biochemistry (New York) , vol.32 , pp. 8682-8692
    • Smith, F.W.1    Feigon, J.2
  • 60
    • 0033178271 scopus 로고    scopus 로고
    • The Effect of Sodium, Potassium and Ammonium Ions on the Conformation of the Dimeric Quadruplex Formed by the Oxytricha Nova Telomere Repeat Oligonucleotide d(G(4)T(4)G(4))
    • Schultze, P., Hud, N., Smith, F., and Feigon, J. (1999) The Effect of Sodium, Potassium and Ammonium Ions on the Conformation of the Dimeric Quadruplex Formed by the Oxytricha Nova Telomere Repeat Oligonucleotide d(G(4)T(4)G(4)) Nucleic Acids Res. 27, 3018-3028
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3018-3028
    • Schultze, P.1    Hud, N.2    Smith, F.3    Feigon, J.4
  • 61
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading
    • Trott, O. and Olson, A. J. (2010) AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading J. Comput. Chem. 31, 455-461
    • (2010) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 62
    • 0028773155 scopus 로고
    • Refined Solution Structure of the Dimeric Quadruplex Formed from the Oxytricha Telomeric Oligonucleotide d(GGGGTTTTGGGG)
    • Schultze, P., Smith, F. W., and Feigon, J. (1994) Refined Solution Structure of the Dimeric Quadruplex Formed from the Oxytricha Telomeric Oligonucleotide d(GGGGTTTTGGGG) Structure 2, 221-233
    • (1994) Structure , vol.2 , pp. 221-233
    • Schultze, P.1    Smith, F.W.2    Feigon, J.3
  • 63
    • 4043162793 scopus 로고    scopus 로고
    • VEGA? - ?an Open Platform to Develop Chemo-Bio-Informatics Applications, using Plug-in Architecture and Script Programming
    • Pedretti, A., Villa, L., and Vistoli, G. (2004) VEGA? - ?an Open Platform to Develop Chemo-Bio-Informatics Applications, using Plug-in Architecture and Script Programming J. Comput.-Aided Mol. Des. 18, 167-173
    • (2004) J. Comput.-Aided Mol. Des. , vol.18 , pp. 167-173
    • Pedretti, A.1    Villa, L.2    Vistoli, G.3
  • 64
    • 0033397980 scopus 로고    scopus 로고
    • Python: A Programming Language for Software Integration and Development
    • Sanner, M. F. (1999) Python: A Programming Language for Software Integration and Development J. Mol. Graphics Model. 17, 57-61
    • (1999) J. Mol. Graphics Model. , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 67
    • 34247540790 scopus 로고    scopus 로고
    • Advances in the Analysis of Isothermal Titration Calorimetry Data for Ligand-DNA Interactions
    • Buurma, N. J. and Haq, I. (2007) Advances in the Analysis of Isothermal Titration Calorimetry Data for Ligand-DNA Interactions Methods (Oxford, U.K.) 42, 162-172
    • (2007) Methods (Oxford, U.K.) , vol.42 , pp. 162-172
    • Buurma, N.J.1    Haq, I.2
  • 69
    • 0033541133 scopus 로고    scopus 로고
    • Intercalative G-Tetraplex Stabilization of Telomeric DNA by a Cationic Porphyrin
    • Haq, I., Trent, J. O., Chowdhry, B. Z., and Jenkins, T. C. (1999) Intercalative G-Tetraplex Stabilization of Telomeric DNA by a Cationic Porphyrin J. Am. Chem. Soc. 121, 1768-1779
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 1768-1779
    • Haq, I.1    Trent, J.O.2    Chowdhry, B.Z.3    Jenkins, T.C.4
  • 70
    • 0017820499 scopus 로고
    • Thermodynamic Analysis of Ion Effects on the Binding and Conformational Equilibria of Proteins and Nucleic Acids: The Roles of Ion Association or Release, Screening, and Ion Effects on Water Activity
    • Record, M. T. J., Anderson, C. F., and Lohman, T. M. (1978) Thermodynamic Analysis of Ion Effects on the Binding and Conformational Equilibria of Proteins and Nucleic Acids: The Roles of Ion Association Or Release, Screening, and Ion Effects on Water Activity Q. Rev. Biophys. 2, 103-178
    • (1978) Q. Rev. Biophys. , vol.2 , pp. 103-178
    • Record, M.T.J.1    Anderson, C.F.2    Lohman, T.M.3
  • 71
    • 0034696752 scopus 로고    scopus 로고
    • Aminoglycoside Binding in the Major Groove of Duplex RNA: The Thermodynamic and Electrostatic Forces that Govern Recognition
    • Jin, E., Katritch, V., Olson, W. K., Kharatisvili, M., Abagyan, R., and Pilch, D. S. (2000) Aminoglycoside Binding in the Major Groove of Duplex RNA: The Thermodynamic and Electrostatic Forces that Govern Recognition J. Mol. Biol. 298, 95-110
    • (2000) J. Mol. Biol. , vol.298 , pp. 95-110
    • Jin, E.1    Katritch, V.2    Olson, W.K.3    Kharatisvili, M.4    Abagyan, R.5    Pilch, D.S.6
  • 72
    • 77951023778 scopus 로고    scopus 로고
    • Calorimetric and Spectroscopic Studies of Aminoglycoside Binding to AT-Rich DNA Triple Helices
    • Xi, H., Kumar, S., Dosen-Micovic, L., and Arya, D. P. (2010) Calorimetric and Spectroscopic Studies of Aminoglycoside Binding to AT-Rich DNA Triple Helices Biochimie 92, 514-529
    • (2010) Biochimie , vol.92 , pp. 514-529
    • Xi, H.1    Kumar, S.2    Dosen-Micovic, L.3    Arya, D.P.4
  • 73
    • 0037129948 scopus 로고    scopus 로고
    • Thermodynamics of Aminoglycoside-rRNA Recognition: The Binding of Neomycin-Class Aminoglycosides to the A Site of 16S rRNA
    • Kaul, M. and Pilch, D. S. (2002) Thermodynamics of Aminoglycoside-rRNA Recognition: The Binding of Neomycin-Class Aminoglycosides to the A Site of 16S rRNA Biochemistry (New York) 41, 7695-7706
    • (2002) Biochemistry (New York) , vol.41 , pp. 7695-7706
    • Kaul, M.1    Pilch, D.S.2
  • 74
    • 0036290781 scopus 로고    scopus 로고
    • Crystal Structure of the Potassium Form of an Oxytricha Nova G-Quadruplex
    • Haider, S., Parkinson, G. N., and Neidle, S. (2002) Crystal Structure of the Potassium Form of an Oxytricha Nova G-Quadruplex J. Mol. Biol. 320, 189-200
    • (2002) J. Mol. Biol. , vol.320 , pp. 189-200
    • Haider, S.1    Parkinson, G.N.2    Neidle, S.3
  • 75
    • 0034833710 scopus 로고    scopus 로고
    • A Simple, High-Resolution Method for Establishing DNA Binding Affinity and Sequence Selectivity
    • Boger, D. L., Fink, B. E., Brunette, S. R., Tse, W. C., and Hedrick, M. P. (2001) A Simple, High-Resolution Method for Establishing DNA Binding Affinity and Sequence Selectivity J. Am. Chem. Soc. 123, 5878-5891
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5878-5891
    • Boger, D.L.1    Fink, B.E.2    Brunette, S.R.3    Tse, W.C.4    Hedrick, M.P.5
  • 76
    • 1642576322 scopus 로고    scopus 로고
    • A Fluorescent Intercalator Displacement Assay for Establishing DNA Binding Selectivity and Affinity
    • Tse, W. C. and Boger, D. L. (2004) A Fluorescent Intercalator Displacement Assay for Establishing DNA Binding Selectivity and Affinity Acc. Chem. Res. 37, 61-69
    • (2004) Acc. Chem. Res. , vol.37 , pp. 61-69
    • Tse, W.C.1    Boger, D.L.2
  • 77
    • 33748511670 scopus 로고    scopus 로고
    • FRET Templated by G-Quadruplex DNA: A Specific Ternary Interaction using an Original Pair of Donor/Acceptor Partners
    • Allain, C., Monchaud, D., and Teulade-Fichou, M. P. (2006) FRET Templated by G-Quadruplex DNA: A Specific Ternary Interaction using an Original Pair of Donor/Acceptor Partners J. Am. Chem. Soc. 128, 11890-11893
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 11890-11893
    • Allain, C.1    Monchaud, D.2    Teulade-Fichou, M.P.3
  • 78
    • 33746809014 scopus 로고    scopus 로고
    • Development of a Fluorescent Intercalator Displacement Assay (G4-FID) for Establishing Quadruplex-DNA Affinity and Selectivity of Putative Ligands
    • Monchaud, D., Allain, C., and Teulade-Fichou, M. P. (2006) Development of a Fluorescent Intercalator Displacement Assay (G4-FID) for Establishing Quadruplex-DNA Affinity and Selectivity of Putative Ligands Bioorg. Med. Chem. Lett. 16, 4842-4845
    • (2006) Bioorg. Med. Chem. Lett. , vol.16 , pp. 4842-4845
    • Monchaud, D.1    Allain, C.2    Teulade-Fichou, M.P.3
  • 80
    • 1542303744 scopus 로고    scopus 로고
    • Analysis of Thermal Melting Curves
    • Mergny, J. L. and Lacroix, L. (2003) Analysis of Thermal Melting Curves Oligonucleotides 13, 515-537
    • (2003) Oligonucleotides , vol.13 , pp. 515-537
    • Mergny, J.L.1    Lacroix, L.2
  • 82
    • 69949106235 scopus 로고    scopus 로고
    • Identification of Specific Small Molecule Ligands for Stem Loop 3 Ribonucleic Acid of the Packaging Signal i of Human Immunodeficiency Virus-1
    • Warui, D. M. and Baranger, A. M. (2009) Identification of Specific Small Molecule Ligands for Stem Loop 3 Ribonucleic Acid of the Packaging Signal I of Human Immunodeficiency Virus-1 J. Med. Chem. 52, 5462-5473
    • (2009) J. Med. Chem. , vol.52 , pp. 5462-5473
    • Warui, D.M.1    Baranger, A.M.2
  • 83
    • 52049120609 scopus 로고    scopus 로고
    • Molecular Docking of Intercalators and Groove-Binders to Nucleic Acids using Autodock and Surflex
    • Holt, P. A., Chaires, J. B., and Trent, J. O. (2008) Molecular Docking of Intercalators and Groove-Binders to Nucleic Acids using Autodock and Surflex J. Chem. Inf. Model. 48, 1602-1615
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 1602-1615
    • Holt, P.A.1    Chaires, J.B.2    Trent, J.O.3
  • 84
    • 65649141960 scopus 로고    scopus 로고
    • Isaindigotone Derivatives: A New Class of Highly Selective Ligands for Telomeric G-Quadruplex DNA
    • Tan, J., Ou, T., Hou, J., Lu, Y., Huang, S., Luo, H., Wu, J., Huang, Z., Wong, K., and Gu, L. (2009) Isaindigotone Derivatives: A New Class of Highly Selective Ligands for Telomeric G-Quadruplex DNA J. Med. Chem. 52, 2825-2835
    • (2009) J. Med. Chem. , vol.52 , pp. 2825-2835
    • Tan, J.1    Ou, T.2    Hou, J.3    Lu, Y.4    Huang, S.5    Luo, H.6    Wu, J.7    Huang, Z.8    Wong, K.9    Gu, L.10
  • 85
    • 49149099403 scopus 로고    scopus 로고
    • 9-N-Substituted Berberine Derivatives: Stabilization of G-Quadruplex DNA and Down-Regulation of Oncogene c-Myc
    • Ma, Y., Ou, T., Hou, J., Lu, Y., Tan, J., Gu, L., and Huang, Z. (2008) 9-N-Substituted Berberine Derivatives: Stabilization of G-Quadruplex DNA and Down-Regulation of Oncogene c-Myc Bioorg. Med. Chem. 16, 7582-7591
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 7582-7591
    • Ma, Y.1    Ou, T.2    Hou, J.3    Lu, Y.4    Tan, J.5    Gu, L.6    Huang, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.