-
1
-
-
65549086510
-
Temporally precise in vivo control of intracellular signalling
-
R.D. Airan, K.R. Thompson, L.E. Fenno, H. Bernstein, and K. Deisseroth Temporally precise in vivo control of intracellular signalling Nature 458 2009 1025 1029
-
(2009)
Nature
, vol.458
, pp. 1025-1029
-
-
Airan, R.D.1
Thompson, K.R.2
Fenno, L.E.3
Bernstein, H.4
Deisseroth, K.5
-
2
-
-
34548856538
-
Rational design of memory in eukaryotic cells
-
DOI 10.1101/gad.1586107
-
C.M. Ajo-Franklin, D.A. Drubin, J.A. Eskin, E.P.S. Gee, D. Landgraf, and I. Phillips Rational design of memory in eukaryotic cells Genes Dev 21 2007 2271 2276 (Pubitemid 47443332)
-
(2007)
Genes and Development
, vol.21
, Issue.18
, pp. 2271-2276
-
-
Ajo-Franklin, C.M.1
Drubin, D.A.2
Eskin, J.A.3
Gee, E.P.S.4
Landgraf, D.5
Phillips, I.6
Silver, P.A.7
-
3
-
-
29144482539
-
Environmentally controlled invasion of cancer cells by engineered bacteria
-
DOI 10.1016/j.jmb.2005.10.076, PII S0022283605013380
-
J.C. Anderson, E.J. Clarke, A.P. Arkin, and C.A. Voigt Environmentally controlled invasion of cancer cells by engineered bacteria J Mol Biol 355 2006 619 627 (Pubitemid 41817623)
-
(2006)
Journal of Molecular Biology
, vol.355
, Issue.4
, pp. 619-627
-
-
Anderson, J.C.1
Clarke, E.J.2
Arkin, A.P.3
Voigt, C.A.4
-
5
-
-
67149113654
-
Engineering key components in a synthetic eukaryotic signal transduction pathway
-
M.S. Antunes, K.J. Morey, N. Tewari-Singh, T.A. Bowen, J.J. Smith, and C.T. Webb Engineering key components in a synthetic eukaryotic signal transduction pathway Mol Syst Biol 2009 5
-
(2009)
Mol Syst Biol
, pp. 5
-
-
Antunes, M.S.1
Morey, K.J.2
Tewari-Singh, N.3
Bowen, T.A.4
Smith, J.J.5
Webb, C.T.6
-
6
-
-
0038241770
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
-
DOI 10.1016/S0092-8674(03)00346-5
-
M.R. Atkinson, M.A. Savageau, J.T. Myers, and A.J. Ninfa Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli Cell 113 2003 597 607 (Pubitemid 36694185)
-
(2003)
Cell
, vol.113
, Issue.5
, pp. 597-607
-
-
Atkinson, M.R.1
Savageau, M.A.2
Myers, J.T.3
Ninfa, A.J.4
-
7
-
-
42149089190
-
A synthetic Escherichia coli predator-prey ecosystem
-
F.K. Balagadde, H. Song, J. Ozaki, C.H. Collins, M. Barnet, and F.H. Arnold A synthetic Escherichia coli predator-prey ecosystem Mol Syst Biol 2008 4
-
(2008)
Mol Syst Biol
, pp. 4
-
-
Balagadde, F.K.1
Song, H.2
Ozaki, J.3
Collins, C.H.4
Barnet, M.5
Arnold, F.H.6
-
8
-
-
38349092683
-
The genetic design of signaling cascades to record receptor activation
-
G. Barnea, W. Strapps, G. Herrada, Y. Berman, J. Ong, and B. Kloss The genetic design of signaling cascades to record receptor activation Proc Natl Acad Sci U S A 105 2008 64 69
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 64-69
-
-
Barnea, G.1
Strapps, W.2
Herrada, G.3
Berman, Y.4
Ong, J.5
Kloss, B.6
-
9
-
-
40849100220
-
Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics
-
DOI 10.1126/science.1151153
-
C.J. Bashor, N.C. Helman, S. Yan, and W.A. Lim Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics Science 319 2008 1539 1543 (Pubitemid 351398185)
-
(2008)
Science
, vol.319
, Issue.5869
, pp. 1539-1543
-
-
Bashor, C.J.1
Helman, N.C.2
Yan, S.3
Lim, W.A.4
-
10
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
DOI 10.1038/nature03461
-
S. Basu, Y. Gerchman, C.H. Collins, F.H. Arnold, and R. Weiss A synthetic multicellular system for programmed pattern formation Nature 434 2005 1130 1134 (Pubitemid 40663491)
-
(2005)
Nature
, vol.434
, Issue.7037
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
11
-
-
2342578714
-
Spatiotemporal control of gene expression with pulse-generating networks
-
DOI 10.1073/pnas.0307571101
-
S. Basu, R. Mehreja, S. Thiberge, M.-T. Chen, and R. Weiss Spatiotemporal control of gene expression with pulse-generating networks Proc Natl Acad Sci U S A 101 2004 6355 6360 (Pubitemid 38585978)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.17
, pp. 6355-6360
-
-
Basu, S.1
Mehreja, R.2
Thiberge, S.3
Chen, M.-T.4
Weiss, R.5
-
13
-
-
33746363486
-
Domains, motifs, and scaffolds: The role of modular interactions in the evolution and wiring of cell signaling circuits
-
DOI 10.1146/annurev.biochem.75.103004.142710
-
R.P. Bhattacharyya, A. Remenyi, B.J. Yeh, and W.A. Lim Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits Annu Rev Biochem 75 2006 655 680 (Pubitemid 44118047)
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 655-680
-
-
Bhattacharyya, R.P.1
Remenyi, A.2
Yeh, B.J.3
Lim, W.A.4
-
14
-
-
15744387380
-
Transcriptional regulation by the numbers: Applications
-
DOI 10.1016/j.gde.2005.02.006, Chromosomes and Expression Mechanisms
-
L. Bintu, N.E. Buchler, H.G. Garcia, U. Gerland, T. Hwa, and J. Kondev Transcriptional regulation by the numbers: applications Curr Opin Genet Dev 15 2005 125 135 (Pubitemid 40410660)
-
(2005)
Current Opinion in Genetics and Development
, vol.15
, Issue.2
, pp. 125-135
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Kuhlman, T.7
Phillips, R.8
-
15
-
-
10244219918
-
BioNetGen: Software for rule-based modeling of signal transduction based on the interactions of molecular domains
-
DOI 10.1093/bioinformatics/bth378
-
M.L. Blinov, J.R. Faeder, B. Goldstein, and W.S. Hlavacek BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains Bioinformatics 20 2004 3289 3291 (Pubitemid 39619231)
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3289-3291
-
-
Blinov, M.L.1
Faeder, J.R.2
Goldstein, B.3
Hlavacek, W.S.4
-
16
-
-
48249101918
-
Cultivating plant synthetic biology from systems biology
-
T.A. Bowen, J.K. Zdunek, and J.I. Medford Cultivating plant synthetic biology from systems biology New Phytol 179 2008 583 587
-
(2008)
New Phytol
, vol.179
, pp. 583-587
-
-
Bowen, T.A.1
Zdunek, J.K.2
Medford, J.I.3
-
17
-
-
36849005857
-
Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium
-
DOI 10.1073/pnas.0704256104
-
K. Brenner, D.K. Karig, R. Weiss, and F.H. Arnold Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium Proc Natl Acad Sci U S A 104 2007 17300 17304 (Pubitemid 350219837)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.44
, pp. 17300-17304
-
-
Brenner, K.1
Karig, D.K.2
Weiss, R.3
Arnold, F.H.4
-
18
-
-
75249086155
-
NAViGaTOR: Network analysis, visualization and graphing Toronto
-
K.R. Brown, D. Otasek, M. Ali, M.J. McGuffin, W. Xie, and B. Devani NAViGaTOR: network analysis, visualization and graphing Toronto Bioinformatics 25 2009 3327 3329
-
(2009)
Bioinformatics
, vol.25
, pp. 3327-3329
-
-
Brown, K.R.1
Otasek, D.2
Ali, M.3
McGuffin, M.J.4
Xie, W.5
Devani, B.6
-
19
-
-
1442306167
-
Design of artificial cell-cell communication using gene and metabolic networks
-
DOI 10.1073/pnas.0306484101
-
T. Bulter, S.-G. Lee, W.W. Wong, E. Fung, M.R. Connor, and J.C. Liao Design of artificial cell-cell communication using gene and metabolic networks Proc Natl Acad Sci U S A 101 2004 2299 2304 (Pubitemid 38269306)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.8
, pp. 2299-2304
-
-
Bulter, T.1
Lee, S.-G.2
Wong, W.W.3
Fung, E.4
Connor, M.R.5
Liao, J.C.6
-
20
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
DOI 10.1038/nbt1413, PII NBT1413
-
B. Canton, A. Labno, and D. Endy Refinement and standardization of synthetic biological parts and devices Nat Biotechnol 26 2008 787 793 (Pubitemid 351961452)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
21
-
-
28644440579
-
Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana
-
DOI 10.1038/nbt1162
-
M.-T. Chen, and R. Weiss Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana Nat Biotechnol 23 2005 1551 1555 (Pubitemid 41752933)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1551-1555
-
-
Chen, M.-T.1
Weiss, R.2
-
22
-
-
43049179364
-
Bio-PEPA: An extension of the process algebra PEPA for biochemical networks
-
F.H.J. Ciocchetta Bio-PEPA: an extension of the process algebra PEPA for biochemical networks Electron Notes Theor Comput Sci 2008 194
-
(2008)
Electron Notes Theor Comput Sci
, pp. 194
-
-
Ciocchetta, F.H.J.1
-
23
-
-
26944476331
-
Regulated cell-to-cell variation in a cell-fate decision system
-
DOI 10.1038/nature03998, PII N03998
-
A. Colman-Lerner, A. Gordon, E. Serra, T. Chin, O. Resnekov, and D. Endy Regulated cell-to-cell variation in a cell-fate decision system Nature 437 2005 699 706 (Pubitemid 41486534)
-
(2005)
Nature
, vol.437
, Issue.7059
, pp. 699-706
-
-
Colman-Lerner, A.1
Gordon, A.2
Serra, E.3
Chin, T.4
Resnekov, O.5
Endy, D.6
Pesce, C.G.7
Brent, R.8
-
24
-
-
48449105746
-
Engineering GPCR signaling pathways with RASSLs
-
B.R. Conklin, E.C. Hsiao, S. Claeysen, A. Dumuis, S. Srinivasan, and J.R. Forsayeth Engineering GPCR signaling pathways with RASSLs Nat Methods 5 2008 673 678
-
(2008)
Nat Methods
, vol.5
, pp. 673-678
-
-
Conklin, B.R.1
Hsiao, E.C.2
Claeysen, S.3
Dumuis, A.4
Srinivasan, S.5
Forsayeth, J.R.6
-
26
-
-
4444382239
-
Formal molecular biology
-
V. Danos, and C. Laneve Formal molecular biology Theor Comp Sci 325 2004 69 110
-
(2004)
Theor Comp Sci
, vol.325
, pp. 69-110
-
-
Danos, V.1
Laneve, C.2
-
27
-
-
55849108542
-
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release
-
A. de las Heras, C.A. Carreno, and V. de Lorenzo Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release Environ Microbiol 10 2008 3305 3316
-
(2008)
Environ Microbiol
, vol.10
, pp. 3305-3316
-
-
De Las Heras, A.1
Carreno, C.A.2
De Lorenzo, V.3
-
28
-
-
34249885757
-
Engineering synthetic signaling proteins with ultrasensitive input/output control
-
DOI 10.1038/nbt1308, PII NBT1308
-
J.E. Dueber, E.A. Mirsky, and W.A. Lim Engineering synthetic signaling proteins with ultrasensitive input/output control Nat Biotechnol 25 2007 660 662 (Pubitemid 46897205)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.6
, pp. 660-662
-
-
Dueber, J.E.1
Mirsky, E.A.2
Lim, W.A.3
-
29
-
-
0141757323
-
Reprogramming control of an allosteric signaling switch through modular recombination
-
DOI 10.1126/science.1085945
-
J.E. Dueber, B.J. Yeh, K. Chak, and W.A. Lim Reprogramming control of an allosteric signaling switch through modular recombination Science 301 2003 1904 1908 (Pubitemid 37221395)
-
(2003)
Science
, vol.301
, Issue.5641
, pp. 1904-1908
-
-
Dueber, J.E.1
Yeh, B.J.2
Chak, K.3
Lim, W.A.4
-
30
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
T. Ellis, X. Wang, and J.J. Collins Diversity-based, model-guided construction of synthetic gene networks with predicted functions Nat Biotechnol 27 2009 465 471
-
(2009)
Nat Biotechnol
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
31
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
DOI 10.1038/35002125
-
M.B. Elowitz, and S. Leibler A synthetic oscillatory network of transcriptional regulators Nature 403 2000 335 338 (Pubitemid 30062393)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibier, S.2
-
32
-
-
28544451327
-
Foundations for engineering biology
-
DOI 10.1038/nature04342, PII N04342
-
D. Endy Foundations for engineering biology Nature 438 2005 449 453 (Pubitemid 41742010)
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 449-453
-
-
Endy, D.1
-
33
-
-
65849183178
-
Golden gate shuffling: A one-pot DNA shuffling method based on type IIs restriction enzymes
-
C. Engler, R. Gruetzner, R. Kandzia, and S. Marillonnet Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes PLoS One 4 2009 e5553
-
(2009)
PLoS One
, vol.4
, pp. 5553
-
-
Engler, C.1
Gruetzner, R.2
Kandzia, R.3
Marillonnet, S.4
-
34
-
-
77949772254
-
Rapid evolution of functional complexity in a domain family
-
A. Ernst, S.L. Sazinsky, S. Hui, B. Currell, M. Dharsee, and S. Seshagiri Rapid evolution of functional complexity in a domain family Sci Signal 2009 2
-
(2009)
Sci Signal
, pp. 2
-
-
Ernst, A.1
Sazinsky, S.L.2
Hui, S.3
Currell, B.4
Dharsee, M.5
Seshagiri, S.6
-
35
-
-
0004250290
-
Curr protoc protein sci chapter 2. (2007). Comparative protein structure modeling using MODELLER
-
N. Eswar, B. Webb, M.A. Marti-Renom, M.S. Madhusudhan, D. Eramian, and M.-Y. Shen Curr protoc protein sci chapter 2. (2007). Comparative protein structure modeling using MODELLER Curr Protoc Protein Sci 2007 [Chapter 2]
-
(2007)
Curr Protoc Protein Sci
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.-Y.6
-
36
-
-
20144377930
-
Modelling and querying interaction networks in the biochemical abstract machine BIOCHAM
-
F. Fages, S. Soliman, and N. Chabrier-Rivier Modelling and querying interaction networks in the biochemical abstract machine BIOCHAM J Biol Phys Chem 2004 4
-
(2004)
J Biol Phys Chem
, pp. 4
-
-
Fages, F.1
Soliman, S.2
Chabrier-Rivier, N.3
-
37
-
-
23944453377
-
Cytokinin signaling
-
DOI 10.1016/j.pbi.2005.07.013, PII S1369526605001032, Cell Signalling and Gene Regulation
-
F.J. Ferreira, and J.J. Kieber Cytokinin signaling Curr Opin Plant Biol 8 2005 518 525 (Pubitemid 41188187)
-
(2005)
Current Opinion in Plant Biology
, vol.8
, Issue.5
, pp. 518-525
-
-
Ferreira, F.J.1
Kieber, J.J.2
-
38
-
-
9444266171
-
CellDesigner: A process diagram editor for gene-regulatory and biochemical networks
-
A. Funahashi, N. Tanimura, M. Morohashi, and H. Kitano CellDesigner: a process diagram editor for gene-regulatory and biochemical networks BIOSILICO 1 2003 159 162
-
(2003)
BIOSILICO
, vol.1
, pp. 159-162
-
-
Funahashi, A.1
Tanimura, N.2
Morohashi, M.3
Kitano, H.4
-
39
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T.S. Gardner, C.R. Cantor, and J.J. Collins Construction of a genetic toggle switch in Escherichia coli Nature 403 2000 339 342 (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
40
-
-
73349139923
-
Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides
-
D.G. Gibson Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides Nucleic Acids Res 37 2009 6984 6990
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6984-6990
-
-
Gibson, D.G.1
-
41
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
D.G. Gibson, L. Young, R.Y. Chuang, J.C. Venter, C.A. Hutchison, and H.O. Smith Enzymatic assembly of DNA molecules up to several hundred kilobases Nat Methods 6 2009 U341 U343
-
(2009)
Nat Methods
, vol.6
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
42
-
-
0037715313
-
Modular modeling of cellular systems with ProMoT/Diva
-
DOI 10.1093/bioinformatics/btg128
-
M. Ginkel, A. Kremling, T. Nutsch, R. Rehner, and E.D. Gilles Modular modeling of cellular systems with ProMoT/Diva Bioinformatics 19 2003 1169 1176 (Pubitemid 36790021)
-
(2003)
Bioinformatics
, vol.19
, Issue.9
, pp. 1169-1176
-
-
Ginkel, M.1
Kremling, A.2
Nutsch, T.3
Rehner, R.4
Gilles, E.D.5
-
43
-
-
26244444772
-
Mitogen-activated protein kinase (MAPK)-docking sites in MAPK kinases function as tethers that are crucial for MAPK regulation in vivo
-
DOI 10.1016/j.cellsig.2005.04.001, PII S0898656805000811
-
S. Grewal, D.M. Molina, and L. Bardwell Mitogen-activated protein kinase (MAPK)-docking sites in MAPK kinases function as tethers that are crucial for MAPK regulation in vivo Cell Signal 18 2006 123 134 (Pubitemid 41415720)
-
(2006)
Cellular Signalling
, vol.18
, Issue.1
, pp. 123-134
-
-
Grewal, S.1
Molina, D.M.2
Bardwell, L.3
-
44
-
-
34147192127
-
Biskit - A software platform for structural bioinformatics
-
DOI 10.1093/bioinformatics/btl655
-
R. Gruenberg, M. Nilges, and J. Leckner Biskit - a software platform for structural bioinformatics Bioinformatics 23 2007 769 770 (Pubitemid 46554731)
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 769-770
-
-
Grunberg, R.1
Nilges, M.2
Leckner, J.3
-
45
-
-
77952473769
-
Strategies for protein synthetic biology
-
R. Gruenberg, and L. Serrano Strategies for protein synthetic biology Nucleic Acids Res 38 2010 2663 2675
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2663-2675
-
-
Gruenberg, R.1
Serrano, L.2
-
46
-
-
32844455250
-
A bottom-up approach to gene regulation
-
DOI 10.1038/nature04473, PII NATURE04473
-
N.J. Guido, X. Wang, D. Adalsteinsson, D. McMillen, J. Hasty, and C.R. Cantor A bottom-up approach to gene regulation Nature 439 2006 856 860 (Pubitemid 43255704)
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 856-860
-
-
Guido, N.J.1
Wang, X.2
Adalsteinsson, D.3
McMillen, D.4
Hasty, J.5
Cantor, C.R.6
Elston, T.C.7
Collins, J.J.8
-
47
-
-
59849089151
-
PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data
-
T. Hawkins, M. Chitale, S. Luban, and D. Kihara PFP: automated prediction of gene ontology functional annotations with confidence scores using protein sequence data Proteins-Struct Funct Bioinformatics 74 2009 566 582
-
(2009)
Proteins-Struct Funct Bioinformatics
, vol.74
, pp. 566-582
-
-
Hawkins, T.1
Chitale, M.2
Luban, S.3
Kihara, D.4
-
48
-
-
0028030082
-
Mechanisms underlying expression of Tn10 encoded tetracycline resistance
-
W. Hillen, and C. Berens Mechanisms underlying expression of Tn10 encoded tetracycline resistance Annu Rev Microbiol 48 1994 345 369 (Pubitemid 24334101)
-
(1994)
Annual Review of Microbiology
, vol.48
, pp. 345-369
-
-
Hillen, W.1
Berens, C.2
-
50
-
-
0141483011
-
Redirecting tyrosine kinase signaling to an apoptotic caspase pathway through chimeric adaptor proteins
-
DOI 10.1073/pnas.1934711100
-
P.L. Howard, M.C. Chia, S.D. Rizzo, F.-F. Liu, and T. Pawson Redirecting tyrosine kinase signaling to an apoptotic caspase pathway through chimeric adaptor proteins Proc Natl Acad Sci U S A 100 2003 11267 11272 (Pubitemid 37205924)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.20
, pp. 11267-11272
-
-
Howard, P.L.1
Chia, M.C.2
Del Rizzo, S.3
Liu, F.-F.4
Pawson, T.5
-
51
-
-
44349104094
-
Design of protein function leaps by directed domain interface evolution
-
DOI 10.1073/pnas.0801097105
-
J. Huang, A. Koide, K. Makabe, and S. Koide Design of protein function leaps by directed domain interface evolution Proc Natl Acad Sci U S A 105 2008 6578 6583 (Pubitemid 351754549)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.18
, pp. 6578-6583
-
-
Huang, J.1
Koide, A.2
Makabe, K.3
Koide, S.4
-
52
-
-
34047258309
-
Positive-Feedback Loops as a Flexible Biological Module
-
DOI 10.1016/j.cub.2007.03.016, PII S0960982207011177
-
N.T. Ingolia, and A.W. Murray Positive-feedback loops as a flexible biological module Curr Biol 17 2007 668 677 (Pubitemid 46552252)
-
(2007)
Current Biology
, vol.17
, Issue.8
, pp. 668-677
-
-
Ingolia, N.T.1
Murray, A.W.2
-
54
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
L.A. Kelley, and M.J.E. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat Protoc 4 2009 363 371
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.E.2
-
55
-
-
33644524741
-
Cell-signalling dynamics in time and space
-
B.N. Kholodenko Cell-signalling dynamics in time and space Nat Rev Mol Cell Biol 7 2006 165 176
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 165-176
-
-
Kholodenko, B.N.1
-
56
-
-
14044276985
-
2-adrenergic receptor cytoplasmic loops
-
DOI 10.1021/bi048328i
-
J.M. Kim, J. Hwa, P. Garriga, P.J. Reeves, U.L. RajBhandary, and H.G. Khorana Light-driven activation of beta 2-adrenergic receptor signaling by a chimeric rhodopsin containing the beta 2-adrenergic receptor cytoplasmic loops Biochemistry 44 2005 2284 2292 (Pubitemid 40279533)
-
(2005)
Biochemistry
, vol.44
, Issue.7
, pp. 2284-2292
-
-
Kim, J.-M.1
Hwa, J.2
Garriga, P.3
Reeves, P.J.4
RajBhandary, U.L.5
Khorana, H.G.6
-
57
-
-
0025153120
-
2-adrenergic receptor and G(s) α subunit
-
K. King, H.G. Dohlman, J. Thorner, M.G. Caron, and R.J. Lefkowitz Control of yeast mating signal transduction by a mammalian beta 2-adrenergic receptor and Gs alpha subunit Science 250 1990 121 123 (Pubitemid 20374972)
-
(1990)
Science
, vol.250
, Issue.4977
, pp. 121-123
-
-
King, K.1
Dohlman, H.G.2
Thorner, J.3
Caron, M.G.4
Lefkowitz, R.J.5
-
58
-
-
0018569580
-
A model regulatory system: Bacterial chemotaxis
-
D.E. Koshland A model regulatory system: bacterial chemotaxis Physiol Rev 1979 811 862
-
(1979)
Physiol Rev
, pp. 811-862
-
-
Koshland, D.E.1
-
59
-
-
0242380634
-
CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle
-
DOI 10.1093/nar/gkg461
-
H. Kurata, N. Matoba, and N. Shimizu CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle Nucleic Acids Res 31 2003 4071 4084 (Pubitemid 37442287)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.14
, pp. 4071-4084
-
-
Kurata, H.1
Matoba, N.2
Shimizu, N.3
-
60
-
-
0034961694
-
STOCHSIM: Modelling of stochastic biomolecular processes
-
N. Le Novere, and T.S. Shimizu STOCHSIM: modelling of stochastic biomolecular processes Bioinformatics 17 2001 575 576 (Pubitemid 32600510)
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 575-576
-
-
Le Novere, N.1
Shimizu, T.S.2
-
61
-
-
60749102914
-
Web-based applications for building, managing and analysing kinetic models of biological systems
-
D.-Y. Lee, R. Saha, F.N.K. Yusufi, W. Park, and I.A. Karimi Web-based applications for building, managing and analysing kinetic models of biological systems Brief Bioinform 10 2009 65 74
-
(2009)
Brief Bioinform
, vol.10
, pp. 65-74
-
-
Lee, D.-Y.1
Saha, R.2
Yusufi, F.N.K.3
Park, W.4
Karimi, I.A.5
-
62
-
-
43249098417
-
Recurrent design patterns in the feedback regulation of the mammalian signalling network
-
S. Legewie, H. Herzel, H.V. Westerhoff, and N. Bluthgen Recurrent design patterns in the feedback regulation of the mammalian signalling network Mol Syst Biol 4 2008 190
-
(2008)
Mol Syst Biol
, vol.4
, pp. 190
-
-
Legewie, S.1
Herzel, H.2
Westerhoff, H.V.3
Bluthgen, N.4
-
63
-
-
77956431677
-
Rationally designed logic integration of regulatory signals in mammalian cells
-
M. Leisner, L. Bleris, J. Lohmueller, Z. Xie, and Y. Benenson Rationally designed logic integration of regulatory signals in mammalian cells Nat Nanotechnol 5 2010 666 670
-
(2010)
Nat Nanotechnol
, vol.5
, pp. 666-670
-
-
Leisner, M.1
Bleris, L.2
Lohmueller, J.3
Xie, Z.4
Benenson, Y.5
-
64
-
-
43249106821
-
Recursive construction of perfect DNA molecules from imperfect oligonucleotides
-
G. Linshiz, T. Ben Yehezkel, S. Kaplan, I. Gronau, S. Ravid, and R. Adar Recursive construction of perfect DNA molecules from imperfect oligonucleotides Mol Syst Biol 4 2008
-
(2008)
Mol Syst Biol
, vol.4
-
-
Linshiz, G.1
Ben Yehezkel, T.2
Kaplan, S.3
Gronau, I.4
Ravid, S.5
Adar, R.6
-
65
-
-
0035478586
-
The Virtual Cell: A software environment for computational cell biology
-
DOI 10.1016/S0167-7799(01)01740-1, PII S0167779901017401
-
L.M. Loew, and J.C. Schaff The Virtual Cell: a software environment for computational cell biology Trends Biotechnol 19 2001 401 406 (Pubitemid 32925033)
-
(2001)
Trends in Biotechnology
, vol.19
, Issue.10
, pp. 401-406
-
-
Loew, L.M.1
Schaff, J.C.2
-
66
-
-
14844289958
-
Automatic generation of cellular reaction networks with Moleculizer 1.0
-
DOI 10.1038/nbt1054
-
L. Lok, and R. Brent Automatic generation of cellular reaction networks with Moleculizer 1.0 Nat Biotechnol 23 2005 131 136 (Pubitemid 41724639)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.1
, pp. 131-136
-
-
Lok, L.1
Brent, R.2
-
67
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
DOI 10.1038/nature01556
-
L.L. Looger, M.A. Dwyer, J.J. Smith, and H.W. Hellinga Computational design of receptor and sensor proteins with novel functions Nature 423 2003 185 190 (Pubitemid 36569543)
-
(2003)
Nature
, vol.423
, Issue.6936
, pp. 185-190
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
68
-
-
77949405661
-
Synthesizing a novel genetic sequential logic circuit: A push-on push-off switch
-
C.B. Lou, X.L. Liu, M. Ni, Y.Q. Huang, Q.S. Huang, and L.W. Huang Synthesizing a novel genetic sequential logic circuit: a push-on push-off switch Mol Syst Biol 2010 6
-
(2010)
Mol Syst Biol
, pp. 6
-
-
Lou, C.B.1
Liu, X.L.2
Ni, M.3
Huang, Y.Q.4
Huang, Q.S.5
Huang, L.W.6
-
69
-
-
0023615620
-
Plasmid construction by homologous recombination in yeast
-
DOI 10.1016/0378-1119(87)90376-3
-
H. Ma, S. Kunes, P.J. Schatz, and D. Botstein Plasmid construction by homologous recombination in yeast Gene 58 1987 201 216 (Pubitemid 17164063)
-
(1987)
Gene
, vol.58
, Issue.2-3
, pp. 201-216
-
-
Ma, H.1
Kunes, S.2
Schatz, P.J.3
Botstein, D.4
-
70
-
-
60849110571
-
SNAVI: Desktop application for analysis and visualization of large-scale signaling networks
-
A. Ma'ayan, S.L. Jenkins, R.L. Webb, S.I. Berger, S.P. Purushothaman, and N.S. Abul-Husn SNAVI: desktop application for analysis and visualization of large-scale signaling networks BMC Syst Biol 2009 3
-
(2009)
BMC Syst Biol
, pp. 3
-
-
Ma'Ayan, A.1
Jenkins, S.L.2
Webb, R.L.3
Berger, S.I.4
Purushothaman, S.P.5
Abul-Husn, N.S.6
-
71
-
-
77954275738
-
HexServer: An FFT-based protein docking server powered by graphics processors
-
G. Macindoe, L. Mavridis, V. Venkatraman, M.D. Devignes, and D.W. Ritchie HexServer: an FFT-based protein docking server powered by graphics processors Nucleic Acids Res 38 Suppl. 2010 W445 W449
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL.
-
-
MacIndoe, G.1
Mavridis, L.2
Venkatraman, V.3
Devignes, M.D.4
Ritchie, D.W.5
-
72
-
-
64549144670
-
Programming with models: Modularity and abstraction provide powerful capabilities for systems biology
-
A. Mallavarapu, M. Thomson, B. Ullian, and J. Gunawardena Programming with models: modularity and abstraction provide powerful capabilities for systems biology J R Soc Interface 6 2009 257 270
-
(2009)
J R Soc Interface
, vol.6
, pp. 257-270
-
-
Mallavarapu, A.1
Thomson, M.2
Ullian, B.3
Gunawardena, J.4
-
73
-
-
50549103571
-
Computational design of synthetic gene circuits with composable parts
-
M.A. Marchisio, and J. Stelling Computational design of synthetic gene circuits with composable parts Bioinformatics 24 2008 1903 1910
-
(2008)
Bioinformatics
, vol.24
, pp. 1903-1910
-
-
Marchisio, M.A.1
Stelling, J.2
-
74
-
-
70349782009
-
Computational design tools for synthetic biology
-
M.A. Marchisio, and J.R. Stelling Computational design tools for synthetic biology Curr Opin Biotechnol 20 2009 479 485
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 479-485
-
-
Marchisio, M.A.1
Stelling, J.R.2
-
75
-
-
61449140264
-
PROMOT: Modular modeling for systems biology
-
S. Mirschel, K. Steinmetz, M. Rempel, M. Ginkel, and E.D. Gilles PROMOT: modular modeling for systems biology Bioinformatics 25 2009 687 689
-
(2009)
Bioinformatics
, vol.25
, pp. 687-689
-
-
Mirschel, S.1
Steinmetz, K.2
Rempel, M.3
Ginkel, M.4
Gilles, E.D.5
-
76
-
-
64049090878
-
Modularity of MAP kinases allows deformation of their signalling pathways
-
A. Mody, J. Weiner, and S. Ramanathan Modularity of MAP kinases allows deformation of their signalling pathways Nat Cell Biol 11 2009 484 491
-
(2009)
Nat Cell Biol
, vol.11
, pp. 484-491
-
-
Mody, A.1
Weiner, J.2
Ramanathan, S.3
-
77
-
-
58549105950
-
Design and signaling mechanism of light-regulated histidine kinases
-
A. Moeglich, R.A. Ayers, and K. Moffat Design and signaling mechanism of light-regulated histidine kinases J Mol Biol 385 2009 1433 1444
-
(2009)
J Mol Biol
, vol.385
, pp. 1433-1444
-
-
Moeglich, A.1
Ayers, R.A.2
Moffat, K.3
-
78
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
-
G.M. Morris, R. Huey, W. Lindstrom, M.F. Sanner, R.K. Belew, and D.S. Goodsell AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility J Comput Chem 30 2009 2785 2791
-
(2009)
J Comput Chem
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
-
80
-
-
0037436155
-
Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms
-
DOI 10.1126/science.1076979
-
S.-H. Park, A. Zarrinpar, and W.A. Lim Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms Science 299 2003 1061 1064 (Pubitemid 36222931)
-
(2003)
Science
, vol.299
, Issue.5609
, pp. 1061-1064
-
-
Park, S.-H.1
Zarrinpar, A.2
Lim, W.A.3
-
81
-
-
0031543433
-
G-protein-coupled receptors in Saccharomyces cerevisiae: High-throughput screening assays for drug discovery
-
DOI 10.1016/S0167-7799(97)01119-0, PII S0167779997011190
-
M.H. Pausch G-protein-coupled receptors in Saccharomyces cerevisiae: high-throughput screening assays for drug discovery Trends Biotechnol 15 1997 487 494 (Pubitemid 27504846)
-
(1997)
Trends in Biotechnology
, vol.15
, Issue.12
, pp. 487-494
-
-
Pausch, M.H.1
-
82
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
DOI 10.1126/science.1083653
-
T. Pawson, and P. Nash Assembly of cell regulatory systems through protein interaction domains Science 300 2003 445 452 (Pubitemid 36444318)
-
(2003)
Science
, vol.300
, Issue.5618
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
83
-
-
14144256681
-
Energy functions for protein design: Adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity
-
DOI 10.1016/j.jmb.2004.12.019
-
N. Pokala, and T.M. Handel Energy functions for protein design: adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity J Mol Biol 347 2005 203 227 (Pubitemid 40283639)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.1
, pp. 203-227
-
-
Pokala, N.1
Handel, T.M.2
-
85
-
-
0035235039
-
Representation and simulation of biochemical processes using the pi-calculus process algebra
-
A. Regev, W. Silverman, and E. Shapiro Representation and simulation of biochemical processes using the pi-calculus process algebra Pac Symp Biocomput 2001 459 470
-
(2001)
Pac Symp Biocomput
, pp. 459-470
-
-
Regev, A.1
Silverman, W.2
Shapiro, E.3
-
86
-
-
77956517750
-
BioNetCAD: Design, simulation and experimental validation of synthetic biochemical networks
-
S. Rialle, L. Felicori, C. Dias-Lopes, S. Peres, S. El Atia, and A.R. Thierry BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks Bioinformatics 26 2010 2298 2304
-
(2010)
Bioinformatics
, vol.26
, pp. 2298-2304
-
-
Rialle, S.1
Felicori, L.2
Dias-Lopes, C.3
Peres, S.4
El Atia, S.5
Thierry, A.R.6
-
87
-
-
34447310821
-
A universal RNAi-based logic evaluator that operates in mammalian cells
-
DOI 10.1038/nbt1307, PII NBT1307
-
K. Rinaudo, L. Bleris, R. Maddamsetti, S. Subramanian, R. Weiss, and Y. Benenson A universal RNAi-based logic evaluator that operates in mammalian cells Nat Biotechnol 25 2007 795 801 (Pubitemid 47052185)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.7
, pp. 795-801
-
-
Rinaudo, K.1
Bleris, L.2
Maddamsetti, R.3
Subramanian, S.4
Weiss, R.5
Benenson, Y.6
-
88
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
D.K. Ro, E.M. Paradise, M. Ouellet, K.J. Fisher, K.L. Newman, and J.M. Ndungu Production of the antimalarial drug precursor artemisinic acid in engineered yeast Nature 440 2006 940 943
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
-
89
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
A. Roy, A. Kucukural, and Y. Zhang I-TASSER: a unified platform for automated protein structure and function prediction Nat Protoc 5 2010 725 738
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
90
-
-
49549114493
-
Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules
-
J. Saez-Rodriguez, S. Gayer, M. Ginkel, and E.D. Gilles Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules Bioinformatics 24 2008 i213 i219
-
(2008)
Bioinformatics
, vol.24
-
-
Saez-Rodriguez, J.1
Gayer, S.2
Ginkel, M.3
Gilles, E.D.4
-
91
-
-
38749110064
-
Defossiling fuel: How synthetic biology can transform biofuel production
-
DOI 10.1021/cb700259j
-
D.F. Savage, J. Way, and P.A. Silver Defossiling fuel: How synthetic biology can transform biofuel production Acs Chem Biol 3 2008 13 16 (Pubitemid 351227978)
-
(2008)
ACS Chemical Biology
, vol.3
, Issue.1
, pp. 13-16
-
-
Savage, D.F.1
Way, J.2
Silver, P.A.3
-
92
-
-
34548778155
-
Ribozymes, riboswitches and beyond: Regulation of gene expression without proteins
-
DOI 10.1038/nrg2172, PII NRG2172
-
A. Serganov, and D.J. Patel Ribozymes, riboswitches and beyond: regulation of gene expression without proteins Nat Rev Genet 8 2007 776 790 (Pubitemid 47429208)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.10
, pp. 776-790
-
-
Serganov, A.1
Patel, D.J.2
-
93
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
P. Shannon, A. Markiel, O. Ozier, N.S. Baliga, J.T. Wang, and D. Ramage Cytoscape: a software environment for integrated models of biomolecular interaction networks Genome Res 13 2003 2498 2504 (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
95
-
-
41149090591
-
Mining logic gates in prokaryotic transcriptional regulation networks
-
R. Silva-Rocha, and V.C. de Lorenzo Mining logic gates in prokaryotic transcriptional regulation networks FEBS Lett 582 2008 1237 1244
-
(2008)
FEBS Lett
, vol.582
, pp. 1237-1244
-
-
Silva-Rocha, R.1
De Lorenzo, V.C.2
-
96
-
-
0032612579
-
Ab initio protein structure prediction of CASP III targets using ROSETTA
-
DOI 10.1002/(SICI)1097-0134(1999)37:3+<171::AID-PROT21>3.0.CO;2-Z
-
K.T. Simons, R. Bonneau, I. Ruczinski, and D. Baker Ab initio protein structure prediction of CASP III targets using ROSETTA Proteins-Struct Funct Genetics 1999 171 176 (Pubitemid 29463528)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.37
, Issue.SUPPL. 3
, pp. 171-176
-
-
Simons, K.T.1
Bonneau, R.2
Ruczinski, I.3
Baker, D.4
-
97
-
-
44649153450
-
Rewiring the Specificity of Two-Component Signal Transduction Systems
-
DOI 10.1016/j.cell.2008.04.040, PII S0092867408006144
-
J.M. Skerker, B.S. Perchuk, A. Siryaporn, E.A. Lubin, O. Ashenberg, and M. Goulian Rewiring the specificity of two-component signal transduction systems Cell 133 2008 1043 1054 (Pubitemid 351787742)
-
(2008)
Cell
, vol.133
, Issue.6
, pp. 1043-1054
-
-
Skerker, J.M.1
Perchuk, B.S.2
Siryaporn, A.3
Lubin, E.A.4
Ashenberg, O.5
Goulian, M.6
Laub, M.T.7
-
98
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
J. Soeding, A. Biegert, and A.N. Lupas The HHpred interactive server for protein homology detection and structure prediction Nucleic Acids Res 33 2005 W244 W248
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Soeding, J.1
Biegert, A.2
Lupas, A.N.3
-
99
-
-
57049159362
-
A fast, robust and tunable synthetic gene oscillator
-
DOI 10.1038/nature07389, PII NATURE07389
-
J. Stricker, S. Cookson, M.R. Bennett, W.H. Mather, L.S. Tsimring, and J. Hasty A fast, robust and tunable synthetic gene oscillator Nature 456 2008 516 519 (Pubitemid 352759003)
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 516-519
-
-
Stricker, J.1
Cookson, S.2
Bennett, M.R.3
Mather, W.H.4
Tsimring, L.S.5
Hasty, J.6
-
100
-
-
0032524325
-
Nuclear access and action of Notch in vivo
-
DOI 10.1016/S0092-8674(00)81193-9
-
G. Struhl, and A. Adachi Nuclear access and action of notch in vivo Cell 93 1998 649 660 (Pubitemid 28240725)
-
(1998)
Cell
, vol.93
, Issue.4
, pp. 649-660
-
-
Struhl, G.1
Adachi, A.2
-
101
-
-
77649187057
-
PROTDES: CHARMM toolbox for computational protein design
-
M. Suarez, P. Tortosa, and A. Jaramillo PROTDES: CHARMM toolbox for computational protein design Syst Synth Biol 2 2008 105 113
-
(2008)
Syst Synth Biol
, vol.2
, pp. 105-113
-
-
Suarez, M.1
Tortosa, P.2
Jaramillo, A.3
-
102
-
-
33749986680
-
Tandem riboswitch architectures exhibit complex gene control functions
-
DOI 10.1126/science.1130716
-
N. Sudarsan, M.C. Hammond, K.F. Block, R.D. Welz, J.E. Barrick, and A. Roth Tandem riboswitch architectures exhibit complex gene control functions Science 314 2006 300 304 (Pubitemid 44571975)
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 300-304
-
-
Sudarsan, N.1
Hammond, M.C.2
Block, K.F.3
Welz, R.4
Barrick, J.E.5
Roth, A.6
Breaker, R.R.7
-
103
-
-
37049012678
-
Identification of novel membrane-binding domains in multiple yeast Cdc42 effectors
-
DOI 10.1091/mbc.E07-07-0676
-
S. Takahashi, and P.M. Pryciak Identification of novel membrane-binding domains in multiple yeast Cdc42 effectors Mol Biol Cell 18 2007 4945 4956 (Pubitemid 350246695)
-
(2007)
Molecular Biology of the Cell
, vol.18
, Issue.12
, pp. 4945-4956
-
-
Takahashi, S.1
Pryciak, P.M.2
-
104
-
-
0042313963
-
A docking site determining specificity of Pbs2 MAPKK for Ssk2/Ssk22 MAPKKKs in the yeast HOG pathway
-
DOI 10.1093/emboj/cdg353
-
K. Tatebayashi, M. Takekawa, and H. Saito A docking site determining specificity of Pbs2 MAPKK for Ssk2/Ssk22 MAPKKKs in the yeast HOG pathway EMBO J 22 2003 3624 3634 (Pubitemid 36898339)
-
(2003)
EMBO Journal
, vol.22
, Issue.14
, pp. 3624-3634
-
-
Tatebayashi, K.1
Takekawa, M.2
Saito, H.3
-
106
-
-
77954102643
-
Protein design in biological networks: From manipulating the input to modifying the output
-
A.M. Van der Sloot, C. Kiel, L. Serrano, and F. Stricher Protein design in biological networks: from manipulating the input to modifying the output Protein Eng Des Sel 22 2009 537 542
-
(2009)
Protein Eng des Sel
, vol.22
, pp. 537-542
-
-
Van Der Sloot, A.M.1
Kiel, C.2
Serrano, L.3
Stricher, F.4
-
107
-
-
38949177391
-
Construction of an artificial intercellular communication network using the nitric oxide signaling elements in mammalian cells
-
W.-D. Wang, Z.-T. Chen, B.-G. Kang, and R. Li Construction of an artificial intercellular communication network using the nitric oxide signaling elements in mammalian cells Exp Cell Res 314 2008 699 706
-
(2008)
Exp Cell Res
, vol.314
, pp. 699-706
-
-
Wang, W.-D.1
Chen, Z.-T.2
Kang, B.-G.3
Li, R.4
-
109
-
-
60549115945
-
A novel hybrid dual-channel catalytic-biological sensor system for assessment of fruit quality
-
W. Weber, S. Luzi, M. Karlsson, and M. Fussenegger A novel hybrid dual-channel catalytic-biological sensor system for assessment of fruit quality J Biotechnol 139 2009 314 317
-
(2009)
J Biotechnol
, vol.139
, pp. 314-317
-
-
Weber, W.1
Luzi, S.2
Karlsson, M.3
Fussenegger, M.4
-
110
-
-
62549134078
-
A synthetic mammalian electro-genetic transcription circuit
-
W. Weber, S. Luzi, M. Karlsson, C.D. Sanchez-Bustamante, U. Frey, and A. Hierlemann A synthetic mammalian electro-genetic transcription circuit Nucleic Acids Res 2009 37
-
(2009)
Nucleic Acids Res
, pp. 37
-
-
Weber, W.1
Luzi, S.2
Karlsson, M.3
Sanchez-Bustamante, C.D.4
Frey, U.5
Hierlemann, A.6
-
111
-
-
48249141397
-
A synthetic mammalian gene circuit reveals antituberculosis compounds
-
W. Weber, R. Schoenmakers, B. Keller, M. Gitzinger, T. Grau, and M.D.-E. Baba A synthetic mammalian gene circuit reveals antituberculosis compounds Proc Natl Acad Sci U S A 105 2008 9994 9998
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 9994-9998
-
-
Weber, W.1
Schoenmakers, R.2
Keller, B.3
Gitzinger, M.4
Grau, T.5
Baba, M.D.-E.6
-
112
-
-
67650360436
-
A synthetic metabolite-based mammalian inter-cell signaling system
-
W. Weber, M. Schuetz, N. Denervaud, and M. Fussenegger A synthetic metabolite-based mammalian inter-cell signaling system Mol Biosyst 5 2009 757 763
-
(2009)
Mol Biosyst
, vol.5
, pp. 757-763
-
-
Weber, W.1
Schuetz, M.2
Denervaud, N.3
Fussenegger, M.4
-
113
-
-
33847302013
-
A synthetic time-delay circuit in mammalian cells and mice
-
DOI 10.1073/pnas.0606398104
-
W. Weber, J. Stelling, M. Rimann, B. Keller, M.D.-E. Baba, and C.C. Weber A synthetic time-delay circuit in mammalian cells and mice Proc Natl Acad Sci U S A 104 2007 2643 2648 (Pubitemid 46327933)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.8
, pp. 2643-2648
-
-
Weber, W.1
Stelling, J.2
Rimann, M.3
Keller, B.4
Daoud-El Baba, M.5
Weber, C.C.6
Aubel, D.7
Fussenegger, M.8
-
114
-
-
62649171253
-
Frameworks for programming biological function through RNA parts and devices
-
M.N. Win, J.C. Liang, and C.D. Smolke Frameworks for programming biological function through RNA parts and devices Chem Biol 16 2009 298 310
-
(2009)
Chem Biol
, vol.16
, pp. 298-310
-
-
Win, M.N.1
Liang, J.C.2
Smolke, C.D.3
-
115
-
-
54249113318
-
Higher-order cellular information processing with synthetic RNA devices
-
M.N. Win, and C.D. Smolke Higher-order cellular information processing with synthetic RNA devices Science 322 2008 456 460
-
(2008)
Science
, vol.322
, pp. 456-460
-
-
Win, M.N.1
Smolke, C.D.2
-
116
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
DOI 10.1038/nature01145
-
W. Winkler, A. Nahvi, and R.R. Breaker Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression Nature 419 2002 952 956 (Pubitemid 35339632)
-
(2002)
Nature
, vol.419
, Issue.6910
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
117
-
-
27144527479
-
Regulation of bacterial gene expression by riboswitches
-
DOI 10.1146/annurev.micro.59.030804.121336
-
W.C. Winkler, and R.R. Breaker Regulation of bacterial gene expression by riboswitches Annu Rev Microbiol 59 2005 487 517 (Pubitemid 41507440)
-
(2005)
Annual Review of Microbiology
, vol.59
, pp. 487-517
-
-
Winkler, W.C.1
Breaker, R.R.2
-
118
-
-
0242369082
-
RAPTOR: Optimal protein threading by linear programming
-
J. Xu, M. Li, D. Kim, and Y. Xu RAPTOR: optimal protein threading by linear programming J Bioinform Comput Biol 1 2003 95 117
-
(2003)
J Bioinform Comput Biol
, vol.1
, pp. 95-117
-
-
Xu, J.1
Li, M.2
Kim, D.3
Xu, Y.4
-
119
-
-
34249894454
-
Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors
-
DOI 10.1038/nature05851, PII NATURE05851
-
B.J. Yeh, R.J. Rutigliano, A. Deb, D. Bar-Sagi, and W.A. Lim Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors Nature 447 2007 596 600 (Pubitemid 46868045)
-
(2007)
Nature
, vol.447
, Issue.7144
, pp. 596-600
-
-
Yeh, B.J.1
Rutigliano, R.J.2
Deb, A.3
Bar-Sagi, D.4
Lim, W.A.5
-
120
-
-
1942467023
-
Programmed population control by cell-cell communication and regulated killing
-
DOI 10.1038/nature02491
-
L. You, R.S. Cox, R. Weiss, and F.H. Arnold Programmed population control by cell-cell communication and regulated killing Nature 428 2004 868 871 (Pubitemid 38529503)
-
(2004)
Nature
, vol.428
, Issue.6985
, pp. 868-871
-
-
You, L.1
Cox III, R.S.2
Weiss, R.3
Arnold, F.H.4
-
121
-
-
57649130757
-
Negative feedback that improves information transmission in yeast signalling
-
R.C. Yu, C.G. Pesce, A. Colman-Lerner, L. Lok, D. Pincus, and E. Serra Negative feedback that improves information transmission in yeast signalling Nature 456 2008 755 761
-
(2008)
Nature
, vol.456
, pp. 755-761
-
-
Yu, R.C.1
Pesce, C.G.2
Colman-Lerner, A.3
Lok, L.4
Pincus, D.5
Serra, E.6
-
122
-
-
0035287616
-
Quorum sensing, or how bacteria "talk" to each other
-
G.B. Zavilgelsky, and I.V. Manukhov Quorum sensing, or how bacteria "Talk" to each other Mol. Biol. 35 2001 224 232
-
(2001)
Mol. Biol.
, vol.35
, pp. 224-232
-
-
Zavilgelsky, G.B.1
Manukhov, I.V.2
-
123
-
-
75249087912
-
SimBoolNet - A cytoscape plugin for dynamic simulation of signaling networks
-
J. Zheng, D. Zhang, P.F. Przytycki, R. Zielinski, J. Capala, and T.M. Przytycka SimBoolNet - a cytoscape plugin for dynamic simulation of signaling networks Bioinformatics 26 2010 141 142
-
(2010)
Bioinformatics
, vol.26
, pp. 141-142
-
-
Zheng, J.1
Zhang, D.2
Przytycki, P.F.3
Zielinski, R.4
Capala, J.5
Przytycka, T.M.6
|