메뉴 건너뛰기




Volumn 5, Issue 9, 2010, Pages 1-11

Gradient descent optimization in gene regulatory pathways

Author keywords

[No Author keywords available]

Indexed keywords

4 AMINOBUTYRIC ACID; CASPASE 10; CASPASE 2; CASPASE 3; CASPASE 6; CASPASE 7; CASPASE 8; CASPASE 9; CAVEOLIN 1; FAS ASSOCIATED DEATH DOMAIN PROTEIN; GLUTAMATE DECARBOXYLASE; GLUTAMATE DECARBOXYLASE 65; GLUTAMATE DECARBOXYLASE 67; STAT3 PROTEIN; TRANSCRIPTION FACTOR GATA 3; TRANSCRIPTION FACTOR T BET; TUMOR NECROSIS FACTOR ALPHA; TUMOR NECROSIS FACTOR RECEPTOR 1; TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED DEATH DOMAIN PROTEIN;

EID: 77958577251     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0012475     Document Type: Article
Times cited : (9)

References (66)
  • 1
    • 0038048325 scopus 로고    scopus 로고
    • Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling
    • Gardner TS, di Bernardo D, Lorenz D, Collins JJ (2003) Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling. Science 301: 102-105.
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 2
    • 0035184506 scopus 로고    scopus 로고
    • Exploring Relationships in Gene Expressions: A Partial Least Squares Approach
    • Datta S (2001) Exploring Relationships in Gene Expressions: A Partial Least Squares Approach. Gene Expr 9: 249-255.
    • (2001) Gene Expr , vol.9 , pp. 249-255
    • Datta, S.1
  • 3
    • 0034447725 scopus 로고    scopus 로고
    • Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
    • Schilling CH, Edwards JS, Letscher D, Palsson BO (2001) Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnology and Bioengineering 71: 286-306.
    • (2001) Biotechnology and Bioengineering , vol.71 , pp. 286-306
    • Schilling, C.H.1    Edwards, J.S.2    Letscher, D.3    Palsson, B.O.4
  • 4
    • 16344382935 scopus 로고    scopus 로고
    • An improved algorithm for stoichiometric network analysis: Theory and applications
    • Urbanczik R, Wagner C (2005) An improved algorithm for stoichiometric network analysis: theory and applications. Bioinformatics 21: 1203-1210.
    • (2005) Bioinformatics , vol.21 , pp. 1203-1210
    • Urbanczik, R.1    Wagner, C.2
  • 5
    • 33746083686 scopus 로고    scopus 로고
    • Quantitative elementary mode analysis of metabolic pathways: The example of yeast glycolysis
    • Schwartz J-M, Kanehisa M (2006) Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformatics 7: 186.
    • (2006) BMC Bioinformatics , vol.7 , pp. 186
    • Schwartz, J.-M.1    Kanehisa, M.2
  • 7
    • 28444458560 scopus 로고    scopus 로고
    • The geometry of the flux cone of a metabolic network
    • Wagner C, Urbanczik R (2005) The geometry of the flux cone of a metabolic network. Biophysical Journal 89: 3837-3845.
    • (2005) Biophysical Journal , vol.89 , pp. 3837-3845
    • Wagner, C.1    Urbanczik, R.2
  • 8
    • 0037424661 scopus 로고    scopus 로고
    • Constraints-based models: Regulation of gene expression reduces the steady-state solution space
    • Covert MW, Palsson BO (2003) Constraints-based models: Regulation of gene expression reduces the steady-state solution space. Journal of Theoretical Biology 221: 309-325.
    • (2003) Journal of Theoretical Biology , vol.221 , pp. 309-325
    • Covert, M.W.1    Palsson, B.O.2
  • 9
    • 0037406237 scopus 로고    scopus 로고
    • Development of network-based pathway definitions: The need to analyze real metabolic networks
    • Palsson BO, Price ND, Papin JA (2003) Development of network-based pathway definitions: the need to analyze real metabolic networks. Trends in Biotechnology 21: 195-198.
    • (2003) Trends In Biotechnology , vol.21 , pp. 195-198
    • Palsson, B.O.1    Price, N.D.2    Papin, J.A.3
  • 10
    • 33748049119 scopus 로고    scopus 로고
    • Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems
    • doi:10.1371/journal.pcbi.0020101
    • Gianchandani EP, Papin JA, Price ND, Joyce AR, Palsson BO (2006) Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. PLoS Computational Biology 2(8): e101. doi:10.1371/journal.pcbi.0020101.
    • (2006) PLoS Computational Biology , vol.2 , Issue.8
    • Gianchandani, E.P.1    Papin, J.A.2    Price, N.D.3    Joyce, A.R.4    Palsson, B.O.5
  • 11
    • 41049101166 scopus 로고    scopus 로고
    • Is Transcriptional Regulation of Metabolic Pathways an Optimal Strategy for Fitness?
    • doi:10.1371/journal.pone.0000855
    • Troein C, Ahren D, Krogh M, Peterson C (2007) Is Transcriptional Regulation of Metabolic Pathways an Optimal Strategy for Fitness? PLoS ONE 2(9): e855. doi:10.1371/journal.pone.0000855.
    • (2007) PLoS ONE , vol.2 , Issue.9
    • Troein, C.1    Ahren, D.2    Krogh, M.3    Peterson, C.4
  • 12
    • 0034615791 scopus 로고    scopus 로고
    • Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective
    • Schilling CH, Letscher D, Palsson BO (2000) Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective. J Theor Biol 203(3): 229-248.
    • (2000) J Theor Biol , vol.203 , Issue.3 , pp. 229-248
    • Schilling, C.H.1    Letscher, D.2    Palsson, B.O.3
  • 13
    • 4544276777 scopus 로고    scopus 로고
    • Network-based regulatory pathways analysis
    • Xiong M, Zhao J, Xiong H (2004) Network-based regulatory pathways analysis. Bioinformatics 20(13): 2056-2066.
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 2056-2066
    • Xiong, M.1    Zhao, J.2    Xiong, H.3
  • 14
    • 41949118715 scopus 로고    scopus 로고
    • Network properties of genes harboring inherited disease mutations
    • Feldman I, Rzhetsky A, Vitkup D (2008) Network properties of genes harboring inherited disease mutations. PNAS 105(11): 4323-4328.
    • (2008) PNAS , vol.105 , Issue.11 , pp. 4323-4328
    • Feldman, I.1    Rzhetsky, A.2    Vitkup, D.3
  • 15
    • 0035367064 scopus 로고    scopus 로고
    • Whole-genome expression analysis: Challenges beyond clustering
    • Altman RB, Raychaudhuri S (2001) Whole-genome expression analysis: challenges beyond clustering. Current Opinion in Structural Biology 11(3):340-347.
    • (2001) Current Opinion In Structural Biology , vol.11 , Issue.3 , pp. 340-347
    • Altman, R.B.1    Raychaudhuri, S.2
  • 16
    • 34447521460 scopus 로고    scopus 로고
    • Human disease classification in the postgenomic era: A complex systems approach to human pathobiology
    • doi:10.1038/msb4100163
    • Loscalzo J, Kohane I, Barabasi AL (2007) Human disease classification in the postgenomic era: A complex systems approach to human pathobiology. Molecular Systems Biology 3: 124. doi:10.1038/msb4100163.
    • (2007) Molecular Systems Biology , vol.3 , pp. 124
    • Loscalzo, J.1    Kohane, I.2    Barabasi, A.L.3
  • 17
    • 25644452031 scopus 로고    scopus 로고
    • The protein kinase A anchoring protein mAKAP coordinates two integrated cAMP effector pathways
    • Dodge-Kafka KL, Soughayer J, Pare GC, Carlisle Michel JJ, Langeberg LK, et al. (2005) The protein kinase A anchoring protein mAKAP coordinates two integrated cAMP effector pathways. Nature 437: 574-578.
    • (2005) Nature , vol.437 , pp. 574-578
    • Dodge-Kafka, K.L.1    Soughayer, J.2    Pare, G.C.3    Michel, C.J.J.4    Langeberg, L.K.5
  • 18
    • 0037444214 scopus 로고    scopus 로고
    • Genomic convergence: Identifying candidate genes for Parkinson's disease by combining serial analysis of gene expression and genetic linkage
    • Hauser MA, Li YJ, Takeuchi S, Walters R, Noureddine M, et al. (2003) Genomic convergence: identifying candidate genes for Parkinson's disease by combining serial analysis of gene expression and genetic linkage. Human Molecular Genetics 12(6): 671-677.
    • (2003) Human Molecular Genetics , vol.12 , Issue.6 , pp. 671-677
    • Hauser, M.A.1    Li, Y.J.2    Takeuchi, S.3    Walters, R.4    Noureddine, M.5
  • 19
    • 22844446947 scopus 로고    scopus 로고
    • An integrative genomics approach to infer causal associations between gene expression and disease
    • Schadt EE, Lamb J, Yang X, Zhu J, Edwards S, et al. (2005) An integrative genomics approach to infer causal associations between gene expression and disease. Nat Genet 37(7): 710-717.
    • (2005) Nat Genet , vol.37 , Issue.7 , pp. 710-717
    • Schadt, E.E.1    Lamb, J.2    Yang, X.3    Zhu, J.4    Edwards, S.5
  • 20
    • 48249158278 scopus 로고    scopus 로고
    • The implications of human metabolic network topology for disease comorbidity
    • Lee DS, Park J, Kay KA, Christakis NA, Oltvai ZN, et al. (2008) The implications of human metabolic network topology for disease comorbidity. PNAS 105(29): 9880-9885.
    • (2008) PNAS , vol.105 , Issue.29 , pp. 9880-9885
    • Lee, D.S.1    Park, J.2    Kay, K.A.3    Christakis, N.A.4    Oltvai, Z.N.5
  • 21
    • 48249103483 scopus 로고    scopus 로고
    • Networking metabolites and diseases
    • Braun P, Rietman E, Vidal M (2008) Networking metabolites and diseases. PNAS 105(29): 9849-9850.
    • (2008) PNAS , vol.105 , Issue.29 , pp. 9849-9850
    • Braun, P.1    Rietman, E.2    Vidal, M.3
  • 23
    • 0032612220 scopus 로고    scopus 로고
    • Linear Modeling of mRNA Expression Levels During CNS Development and Injury
    • D'haeseleer P, Wen X, Fuhrman S, Somogyi R (1999) Linear Modeling of mRNA Expression Levels During CNS Development and Injury. http://helixweb.stanford.edu/psb99/Dhaeseleer.pdf, DBLP, http://dblp.uni-trier.de Pacific Symposium on Biocomputing 4: 41-52.
    • (1999) Pacific Symposium On Biocomputing , vol.4 , pp. 41-52
    • D'haeseleer, P.1    Wen, X.2    Fuhrman, S.3    Somogyi, R.4
  • 24
    • 33646346114 scopus 로고    scopus 로고
    • A method for the generation of standardized qualitative dynamical systems of regulatory networks
    • doi:10.1186/1742-4682-3-13
    • Mendoza L, Xenarios I (2006) A method for the generation of standardized qualitative dynamical systems of regulatory networks. Theoretical Biology and Medical Modelling 3: 13. doi:10.1186/1742-4682-3-13.
    • (2006) Theoretical Biology and Medical Modelling , vol.3 , pp. 13
    • Mendoza, L.1    Xenarios, I.2
  • 25
    • 33646345600 scopus 로고    scopus 로고
    • A network model for the control of the differentiation process in Th cells
    • Mendoza L (2006) A network model for the control of the differentiation process in Th cells. Biosystems 84: 101-114.
    • (2006) Biosystems , vol.84 , pp. 101-114
    • Mendoza, L.1
  • 26
    • 13544269611 scopus 로고    scopus 로고
    • An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
    • Ma H-W, Kumar B, Ditges U, Gunzer F, Buer J, et al. (2004) An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs. Nucleic Acids Research 32(22): 6643-6649.
    • (2004) Nucleic Acids Research , vol.32 , Issue.22 , pp. 6643-6649
    • Ma, H.-W.1    Kumar, B.2    Ditges, U.3    Gunzer, F.4    Buer, J.5
  • 27
    • 1642403354 scopus 로고    scopus 로고
    • Identification of genetic networks
    • Xiong MM, Li J, Fang X (2004) Identification of genetic networks. Genetics 166: 1037-1052.
    • (2004) Genetics , vol.166 , pp. 1037-1052
    • Xiong, M.M.1    Li, J.2    Fang, X.3
  • 28
    • 85047689504 scopus 로고    scopus 로고
    • The TAOGen Algorithm for Identifying Gene Interaction Networks with Applications to SOS Repair in E.coli
    • Yamanaka T, Toyoshiba H, Sone H, Parham FM, Portier CJ (2004) The TAOGen Algorithm for Identifying Gene Interaction Networks with Applications to SOS Repair in E.coli. Environmental Health Perspectives 112(16): 1614-1621.
    • (2004) Environmental Health Perspectives , vol.112 , Issue.16 , pp. 1614-1621
    • Yamanaka, T.1    Toyoshiba, H.2    Sone, H.3    Parham, F.M.4    Portier, C.J.5
  • 32
    • 0037199936 scopus 로고    scopus 로고
    • Importance of FADD Signaling inserum Deprivation- and Hypoxia-induced Cardiomyocyte Apoptosis
    • Chao W, Shen Y, Li L, Rosenzweig A (2002) Importance of FADD Signaling inserum Deprivation- and Hypoxia-induced Cardiomyocyte Apoptosis. The Journal of Biological Chemistry 277(35): 31639-31645.
    • (2002) The Journal of Biological Chemistry , vol.277 , Issue.35 , pp. 31639-31645
    • Chao, W.1    Shen, Y.2    Li, L.3    Rosenzweig, A.4
  • 33
    • 39749174410 scopus 로고    scopus 로고
    • Dominant- Negative FADD Rescues the In Vivo Fitness of a Cytomegalovirus Lacking an Antiapoptotic Viral Gene
    • Cicin-Sain L, Ruzsics Z, Podlech J, Bubic I, Menard C, et al. (2008) Dominant- Negative FADD Rescues the In Vivo Fitness of a Cytomegalovirus Lacking an Antiapoptotic Viral Gene. Journal of Virology 82(5): 2056-2064.
    • (2008) Journal of Virology , vol.82 , Issue.5 , pp. 2056-2064
    • Cicin-Sain, L.1    Ruzsics, Z.2    Podlech, J.3    Bubic, I.4    Menard, C.5
  • 34
    • 34250788833 scopus 로고    scopus 로고
    • Modifications enhance the apoptosisinducing activity of FADD
    • Takashina T, Nakayama M (2007) Modifications enhance the apoptosisinducing activity of FADD. Molecular Cancer Therapeutics 6(6): 1793-1803.
    • (2007) Molecular Cancer Therapeutics , vol.6 , Issue.6 , pp. 1793-1803
    • Takashina, T.1    Nakayama, M.2
  • 35
    • 34447303334 scopus 로고    scopus 로고
    • CpG island promoter hypermethylation of the pro-apoptotic gene caspase-8 is a common hallmark of relapsed glioblastoma multiforme
    • Martinez R, Setien F, Voelter C, Casado S, Quesada MP, et al. (2007) CpG island promoter hypermethylation of the pro-apoptotic gene caspase-8 is a common hallmark of relapsed glioblastoma multiforme. Carcinogenesis 28(6): 1264-1268.
    • (2007) Carcinogenesis , vol.28 , Issue.6 , pp. 1264-1268
    • Martinez, R.1    Setien, F.2    Voelter, C.3    Casado, S.4    Quesada, M.P.5
  • 36
    • 0034440818 scopus 로고    scopus 로고
    • Proteases for Cell Suicide: Functions and Regulation of Caspases
    • Chang HY, Yang X (2000) Proteases for Cell Suicide: Functions and Regulation of Caspases. Microbiology And Molecular Biology Reviews 64(4): 821-846.
    • (2000) Microbiology and Molecular Biology Reviews , vol.64 , Issue.4 , pp. 821-846
    • Chang, H.Y.1    Yang, X.2
  • 37
    • 0030931876 scopus 로고    scopus 로고
    • Caspases: The executioners of apoptosis
    • Cohen GM (1997) Caspases: the executioners of apoptosis. Biochem J 326: 1-16.
    • (1997) Biochem J , vol.326 , pp. 1-16
    • Cohen, G.M.1
  • 38
    • 33646166625 scopus 로고    scopus 로고
    • Hepatitis C Virus Core Protein Inhibits Tumor Necrosis Factor Alpha-Mediated Apoptosis by a Protective Effect Involving Cellular FLICE Inhibitory Protein
    • Saito K, Meyer K, Warner R, Basu A, Ray RB, et al. (2006) Hepatitis C Virus Core Protein Inhibits Tumor Necrosis Factor Alpha-Mediated Apoptosis by a Protective Effect Involving Cellular FLICE Inhibitory Protein. Journal of Virology 80(9): 4372-4379.
    • (2006) Journal of Virology , vol.80 , Issue.9 , pp. 4372-4379
    • Saito, K.1    Meyer, K.2    Warner, R.3    Basu, A.4    Ray, R.B.5
  • 40
    • 4444324090 scopus 로고    scopus 로고
    • Apoptosis and disease: A life or death decision
    • MacFarlane M, Williams AC (2004) Apoptosis and disease: a life or death decision. EMBO Reports 5: 674-678.
    • (2004) EMBO Reports , vol.5 , pp. 674-678
    • Macfarlane, M.1    Williams, A.C.2
  • 41
    • 0037193473 scopus 로고    scopus 로고
    • Intrinsic and extrinsic pathway signaling during neuronal apoptosis: Lessons from the analysis of mutant mice
    • Putcha GV, Harris CA, Moulder KL, Easton RM, Thompson CB, et al. (2002) Intrinsic and extrinsic pathway signaling during neuronal apoptosis: lessons from the analysis of mutant mice. The Journal of Cell Biology 157(3): 441-453.
    • (2002) The Journal of Cell Biology , vol.157 , Issue.3 , pp. 441-453
    • Putcha, G.V.1    Harris, C.A.2    Moulder, K.L.3    Easton, R.M.4    Thompson, C.B.5
  • 42
    • 35148865583 scopus 로고    scopus 로고
    • Regulation of the Extrinsic Apoptotic Pathway by the Extracellular Matrix Glycoprotein EMILIN2
    • Mongiat M, Ligresti G, Marastoni S, Lorenzon E, Doliana R, et al. (2007) Regulation of the Extrinsic Apoptotic Pathway by the Extracellular Matrix Glycoprotein EMILIN2. Molecular and Cellular Biology 27(20): 7176-7187.
    • (2007) Molecular and Cellular Biology , vol.27 , Issue.20 , pp. 7176-7187
    • Mongiat, M.1    Ligresti, G.2    Marastoni, S.3    Lorenzon, E.4    Doliana, R.5
  • 43
    • 0036892132 scopus 로고    scopus 로고
    • Involvement of FKHR-Dependent TRADD Expression in Chemotherapeutic Drug-Induced Apoptosis
    • Rokudai S, Fujita N, Kitahara O, Nakamura Y, Tsuruo T (2002) Involvement of FKHR-Dependent TRADD Expression in Chemotherapeutic Drug-Induced Apoptosis. Molecular and Cellular Biology 22(24): 8695-8708.
    • (2002) Molecular and Cellular Biology , vol.22 , Issue.24 , pp. 8695-8708
    • Rokudai, S.1    Fujita, N.2    Kitahara, O.3    Nakamura, Y.4    Tsuruo, T.5
  • 44
    • 0037054549 scopus 로고    scopus 로고
    • Nuclear and cytoplasmic shuttling of TRADD induces apoptosis via different mechanisms
    • Morgan M, Thorburn J, Pandolfi PP, Thorburn A (2002) Nuclear and cytoplasmic shuttling of TRADD induces apoptosis via different mechanisms. The Journal of Cell Biology 157(6): 975-984.
    • (2002) The Journal of Cell Biology , vol.157 , Issue.6 , pp. 975-984
    • Morgan, M.1    Thorburn, J.2    Pandolfi, P.P.3    Thorburn, A.4
  • 45
    • 54049086943 scopus 로고    scopus 로고
    • Pursuing different TRADDes: TRADD signaling induced by TNF-receptor 1 and the Epstein-Barr virus oncoprotein LMP1
    • Kieser A (2008) Pursuing different TRADDes: TRADD signaling induced by TNF-receptor 1 and the Epstein-Barr virus oncoprotein LMP1. Biological Chemistry 389: 1261-1271.
    • (2008) Biological Chemistry , vol.389 , pp. 1261-1271
    • Kieser, A.1
  • 46
    • 33746964499 scopus 로고    scopus 로고
    • Xenopus death-domain-containing proteins FADD and R1P1 synergistically activate JNK and Nf-kappa B
    • Ishizawa Y, Tamura K, Yamaguchi T, Matsumoto K, Komiyama M, et al. (2006) Xenopus death-domain-containing proteins FADD and R1P1 synergistically activate JNK and Nf-kappa B. Biology of the Cell 98: 465-478.
    • (2006) Biology of The Cell , vol.98 , pp. 465-478
    • Ishizawa, Y.1    Tamura, K.2    Yamaguchi, T.3    Matsumoto, K.4    Komiyama, M.5
  • 47
    • 4944255289 scopus 로고    scopus 로고
    • Effects of Antisense Oligonucleotide-Mediated Depletion of Tumor Necrosis Factor (TNF) Receptor 1-Associated Death Domain Protein on TNF-Induced Gene Expression
    • Siwkowski AM, Madge LA, Koo S, McMillan EL, Monia BP, et al. (2004) Effects of Antisense Oligonucleotide-Mediated Depletion of Tumor Necrosis Factor (TNF) Receptor 1-Associated Death Domain Protein on TNF-Induced Gene Expression. Molecular Pharmacology 66(3): 572-579.
    • (2004) Molecular Pharmacology , vol.66 , Issue.3 , pp. 572-579
    • Siwkowski, A.M.1    Madge, L.A.2    Koo, S.3    McMillan, E.L.4    Monia, B.P.5
  • 48
    • 0032876816 scopus 로고    scopus 로고
    • Death deflected: Il-15 inhibits TNF-a-mediated apoptosis in fibroblasts by TRAF2 recruitment to the IL-15Ra chain
    • Bulfone-Paus S, Bulanova E, Pohl T, Budagian V, Durkop H, et al. (1999) Death deflected: Il-15 inhibits TNF-a-mediated apoptosis in fibroblasts by TRAF2 recruitment to the IL-15Ra chain. The FASEB Journal 13: 1575-1585.
    • (1999) The FASEB Journal , vol.13 , pp. 1575-1585
    • Bulfone-Paus, S.1    Bulanova, E.2    Pohl, T.3    Budagian, V.4    Durkop, H.5
  • 49
    • 0034327721 scopus 로고    scopus 로고
    • IFN-asuppresses activation of nuclear transcription factors NF-kappa B and activator protein 1 and potentiates TNF-induced apoptosis
    • Manna SK, Mukhopadhyay A, Aggarwal BB (2000) IFN-asuppresses activation of nuclear transcription factors NF-kappa B and activator protein 1 and potentiates TNF-induced apoptosis. The Journal of Immunology 165: 4927-4934.
    • (2000) The Journal of Immunology , vol.165 , pp. 4927-4934
    • Manna, S.K.1    Mukhopadhyay, A.2    Aggarwal, B.B.3
  • 50
    • 34250350056 scopus 로고    scopus 로고
    • Modeling of the Role of a Bax-Activation Switch in the Mitochondrial Apoptosis Decision
    • Chen C, Cui J, Lu H, Wang R, Zhang S, et al. (2007) Modeling of the Role of a Bax-Activation Switch in the Mitochondrial Apoptosis Decision. Biophysical Journal 92: 4304-4315.
    • (2007) Biophysical Journal , vol.92 , pp. 4304-4315
    • Chen, C.1    Cui, J.2    Lu, H.3    Wang, R.4    Zhang, S.5
  • 51
    • 0034685841 scopus 로고    scopus 로고
    • Postnatal development of a GABA deficit and disturbance of neural functions in mice lacking GAD65
    • Stork O, Ji F-Y, Kaneko K, Stork S, Yoshinobu Y, et al. (2000) Postnatal development of a GABA deficit and disturbance of neural functions in mice lacking GAD65. Brain Research 865: 45-58.
    • (2000) Brain Research , vol.865 , pp. 45-58
    • Stork, O.1    Ji, F.-Y.2    Kaneko, K.3    Stork, S.4    Yoshinobu, Y.5
  • 52
    • 34247505657 scopus 로고    scopus 로고
    • Increased efficiency of homologous recombination in Toxoplasma gondii dense granule protein 3 demonstrates that GRA3 is not necessary in cell culture but does contribute to virulence
    • Craver MPJ, Knoll LJ (2007) Increased efficiency of homologous recombination in Toxoplasma gondii dense granule protein 3 demonstrates that GRA3 is not necessary in cell culture but does contribute to virulence. Molecular and Biochemical Parasitology 153: 149-157.
    • (2007) Molecular and Biochemical Parasitology , vol.153 , pp. 149-157
    • Craver, M.P.J.1    Knoll, L.J.2
  • 53
    • 0028987313 scopus 로고
    • Developmental kinetics of GAD family mRNAs parallel neurogenesis in the rat spinal cord
    • Somogyi R, Wen X, Ma W, Barker JL (1995) Developmental kinetics of GAD family mRNAs parallel neurogenesis in the rat spinal cord. The Journal of Neuroscience 15: 2575-2591.
    • (1995) The Journal of Neuroscience , vol.15 , pp. 2575-2591
    • Somogyi, R.1    Wen, X.2    Ma, W.3    Barker, J.L.4
  • 54
    • 44349185622 scopus 로고    scopus 로고
    • Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions
    • Santoni D, Pedicini M, Castiglione F (2008) Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions. Bioinformatics 24(11): 1374-1380.
    • (2008) Bioinformatics , vol.24 , Issue.11 , pp. 1374-1380
    • Santoni, D.1    Pedicini, M.2    Castiglione, F.3
  • 56
    • 0037018405 scopus 로고    scopus 로고
    • Caveolin-1 inhibits anchorageindependent growth, anoikis and invasiveness in MCF-7 human breast cancer cells
    • Fiucci G, Ravid D, Reich R, Liscovitch M (2002) Caveolin-1 inhibits anchorageindependent growth, anoikis and invasiveness in MCF-7 human breast cancer cells. Oncogene 21: 2365-2375.
    • (2002) Oncogene , vol.21 , pp. 2365-2375
    • Fiucci, G.1    Ravid, D.2    Reich, R.3    Liscovitch, M.4
  • 57
    • 0035149144 scopus 로고    scopus 로고
    • Caveolin-1 Is Down-Regulated in Human Ovarian Carcinoma and Acts as a Candidate Tumor Suppressor Gene
    • Wiechen K, Diatchenko L, Agoulnik A, Scharff KM, Schober H, et al. (2001) Caveolin-1 Is Down-Regulated in Human Ovarian Carcinoma and Acts as a Candidate Tumor Suppressor Gene. Am J Pathol 159(5): 1635-1643.
    • (2001) Am J Pathol , vol.159 , Issue.5 , pp. 1635-1643
    • Wiechen, K.1    Diatchenko, L.2    Agoulnik, A.3    Scharff, K.M.4    Schober, H.5
  • 58
    • 0029935480 scopus 로고    scopus 로고
    • Complement factor D, a novel serine protease
    • Volanakis JE, Narayana SV (1996) Complement factor D, a novel serine protease. Protein Science 5(4): 553-564.
    • (1996) Protein Science , vol.5 , Issue.4 , pp. 553-564
    • Volanakis, J.E.1    Narayana, S.V.2
  • 59
    • 0033485338 scopus 로고    scopus 로고
    • Changes in chromatin organization at the neutrophil elastase locus associated with myeloid cell differentiation
    • Wong ET, Jenne DE, Zimmer M, Porter SD, Gilks CB (1999) Changes in chromatin organization at the neutrophil elastase locus associated with myeloid cell differentiation. Blood 94(11): 3730-3736.
    • (1999) Blood , vol.94 , Issue.11 , pp. 3730-3736
    • Wong, E.T.1    Jenne, D.E.2    Zimmer, M.3    Porter, S.D.4    Gilks, C.B.5
  • 60
    • 0036295930 scopus 로고    scopus 로고
    • Analysis of the gene expression profiles of immature versus mature bone marrow-derived dendritic cells using DNA arrays
    • Chen Z, Gordon JR, Zhang X, Xiang J (2002) Analysis of the gene expression profiles of immature versus mature bone marrow-derived dendritic cells using DNA arrays. Biochem Biophys Res Commun 290(1): 66-72.
    • (2002) Biochem Biophys Res Commun , vol.290 , Issue.1 , pp. 66-72
    • Chen, Z.1    Gordon, J.R.2    Zhang, X.3    Xiang, J.4
  • 61
    • 0032428175 scopus 로고    scopus 로고
    • Reconstitution of an SOS Response Pathway: Derepression of Transcription in Response to DNA Breaks
    • Anderson DG, Kowalczykowski SC (1998) Reconstitution of an SOS Response Pathway: Derepression of Transcription in Response to DNA Breaks. Cell 95: 975-979.
    • (1998) Cell , vol.95 , pp. 975-979
    • Anderson, D.G.1    Kowalczykowski, S.C.2
  • 62
    • 0030965427 scopus 로고    scopus 로고
    • Analysis of ssb mutations in vivo implicates SSB protein in two distinct pathways of SOS induction and in recombinational DNA repair
    • Carlini LE, Porter RD (1997) Analysis of ssb mutations in vivo implicates SSB protein in two distinct pathways of SOS induction and in recombinational DNA repair. Molecular Microbiology 24(1): 129-139.
    • (1997) Molecular Microbiology , vol.24 , Issue.1 , pp. 129-139
    • Carlini, L.E.1    Porter, R.D.2
  • 63
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner FR, Plunkett G, 3rd, Bloch CA, Perna NT, Burland V, et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277(5331): 1453-1462.
    • (1997) Science , vol.277 , Issue.5331 , pp. 1453-1462
    • Blattner, F.R.1    Plunkett, G.2    Bloch, C.A.3    Perna, N.T.4    Burland, V.5
  • 64
    • 84887213797 scopus 로고    scopus 로고
    • Increased Hydrogen Production by Genetic Engineering of Escherichia coli
    • doi:10.1371/ journal.pone.0004432
    • Fan Z, Yuan L, Chatterjee R (2009) Increased Hydrogen Production by Genetic Engineering of Escherichia coli. PLoS ONE 4(2): e4432. doi:10.1371/ journal.pone.0004432.
    • (2009) PLoS ONE , vol.4 , Issue.2
    • Fan, Z.1    Yuan, L.2    Chatterjee, R.3
  • 65
    • 32044471535 scopus 로고    scopus 로고
    • Enhanced Hydrogen Production from Formic Acid by Formate Hydrogen Lyase- Overexpressing Escherichia coli Strains
    • Yoshida A, Nishimura T, Kawaguchi H, Inui M, Yukawa H (2005) Enhanced Hydrogen Production from Formic Acid by Formate Hydrogen Lyase- Overexpressing Escherichia coli Strains. Applied and Environmental Microbiology 71(11): 6762-6768.
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.11 , pp. 6762-6768
    • Yoshida, A.1    Nishimura, T.2    Kawaguchi, H.3    Inui, M.4    Yukawa, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.