-
1
-
-
0018165127
-
Computer analysis of protein-protein interaction
-
Wodak SJ, Janin J. Computer analysis of protein-protein interaction. J Mol Biol 1978;124:323-342.
-
(1978)
J Mol Biol
, vol.124
, pp. 323-342
-
-
Wodak, S.J.1
Janin, J.2
-
2
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith GR, Sternberg MJ. Prediction of protein-protein interactions by docking methods. Curr Opin Struct Biol 2002;12:28-35.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 28-35
-
-
Smith, G.R.1
Sternberg, M.J.2
-
3
-
-
0036606483
-
Principles of docking: an overview of search algorithms and a guide to scoring functions
-
Halperin I, Ma B, Wolfson H, Nussinov R. Principles of docking: an overview of search algorithms and a guide to scoring functions. Proteins 2002;47:409-43.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
4
-
-
0347755444
-
Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking
-
Schneidman-Duhovny D, Nussinov R, Wolfson HJ. Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking. Curr Med Chem 2004;11:91-107.
-
(2004)
Curr Med Chem
, vol.11
, pp. 91-107
-
-
Schneidman-Duhovny, D.1
Nussinov, R.2
Wolfson, H.J.3
-
5
-
-
33646472024
-
High-resolution protein-protein docking
-
Gray JJ. High-resolution protein-protein docking. Curr Opin Struct Biol 2006;16:183-193.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 183-193
-
-
Gray, J.J.1
-
6
-
-
0020491251
-
A geometric approach to macromoleculeligand interactions
-
Kuntz ID, Blaney JM, Oatley SJ, Langridge R, Ferrin TE. A geometric approach to macromoleculeligand interactions. J Mol Biol 1982;161:269-288.
-
(1982)
J Mol Biol
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
7
-
-
0025785057
-
Protein docking and complementarity
-
Shoichet BK, Kuntz ID. Protein docking and complementarity. J Mol Biol 1991;221:327-346.
-
(1991)
J Mol Biol
, vol.221
, pp. 327-346
-
-
Shoichet, B.K.1
Kuntz, I.D.2
-
8
-
-
0036108486
-
Protein-protein docking with multiple residue conformations and residue substitutions
-
Lorber DM, Udo MK, Shoichet BK. Protein-protein docking with multiple residue conformations and residue substitutions. Protein Sci 2002;11:1393-1408.
-
(2002)
Protein Sci
, vol.11
, pp. 1393-1408
-
-
Lorber, D.M.1
Udo, M.K.2
Shoichet, B.K.3
-
11
-
-
34250877416
-
Protein docking using surface matching and supervised machine learning
-
Bordner AJ, Gorin AA. Protein docking using surface matching and supervised machine learning. Proteins 2007;68:488-502.
-
(2007)
Proteins
, vol.68
, pp. 488-502
-
-
Bordner, A.J.1
Gorin, A.A.2
-
12
-
-
0026310932
-
Soft docking: matching of molecular surface cubes
-
Jiang F, Kim SH. Soft docking: matching of molecular surface cubes. J Mol Biol 1991;219:79-102.
-
(1991)
J Mol Biol
, vol.219
, pp. 79-102
-
-
Jiang, F.1
Kim, S.H.2
-
13
-
-
0034212826
-
BiGGER: a new (soft) docking algorithm for predicting protein interactions
-
Palma PN, Krippahl L, Wampler JE, Moura JJ. BiGGER: a new (soft) docking algorithm for predicting protein interactions. Proteins 2000;39:372-384.
-
(2000)
Proteins
, vol.39
, pp. 372-384
-
-
Palma, P.N.1
Krippahl, L.2
Wampler, J.E.3
Moura, J.J.4
-
15
-
-
84986522918
-
ICM - A new method for protein modeling and design: applications to docking and structure prediction from the distorted native conformation
-
Abagyan R, Totrov M, Kuznetsov D. ICM - A new method for protein modeling and design: applications to docking and structure prediction from the distorted native conformation. J Comput Chem 1994;15:488-506.
-
(1994)
J Comput Chem
, vol.15
, pp. 488-506
-
-
Abagyan, R.1
Totrov, M.2
Kuznetsov, D.3
-
16
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol 2003;331:281-299.
-
(2003)
J Mol Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
17
-
-
0038583687
-
Protein-protein docking with a reduced protein model accounting for side-chain flexibility
-
Zacharias M. Protein-protein docking with a reduced protein model accounting for side-chain flexibility. Protein Sci 2003;12:1271-1282.
-
(2003)
Protein Sci
, vol.12
, pp. 1271-1282
-
-
Zacharias, M.1
-
18
-
-
0037442962
-
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003;125:1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
19
-
-
0026572775
-
Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques
-
Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natl Acad Sci USA 1992;89:2195-2199.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2195-2199
-
-
Katchalski-Katzir, E.1
Shariv, I.2
Eisenstein, M.3
Friesem, A.A.4
Aflalo, C.5
Vakser, I.A.6
-
20
-
-
0031565730
-
Modelling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb HA, Jackson RM, Sternberg MJ. Modelling protein docking using shape complementarity, electrostatics and biochemical information. J Mol Biol 1997;272:106-120.
-
(1997)
J Mol Biol
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.3
-
21
-
-
0031296607
-
Evaluation of GRAMM low-resolution docking methodology on the hemagglutininantibody complex
-
Vakser IA. Evaluation of GRAMM low-resolution docking methodology on the hemagglutininantibody complex. Proteins 1997;Suppl 1:226-230.
-
(1997)
Proteins
, Issue.SUPPL 1
, pp. 226-230
-
-
Vakser, I.A.1
-
22
-
-
0035040480
-
Protein docking using continuum electrostatics and geometric fit
-
Mandell JG, Roberts VA, Pique ME, Kotlovyi V, Mitchell JC, Nelson E, Tsigelny I, Ten Eyck LF. Protein docking using continuum electrostatics and geometric fit. Protein Eng 2001;14:105-113.
-
(2001)
Protein Eng
, vol.14
, pp. 105-113
-
-
Mandell, J.G.1
Roberts, V.A.2
Pique, M.E.3
Kotlovyi, V.4
Mitchell, J.C.5
Nelson, E.6
Tsigelny, I.7
Ten Eyck, L.F.8
-
23
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
Chen R, Weng ZP. A novel shape complementarity scoring function for protein-protein docking. Proteins 2003;51:397-408.
-
(2003)
Proteins
, vol.51
, pp. 397-408
-
-
Chen, R.1
Weng, Z.P.2
-
25
-
-
33749020839
-
PIPER: An FFT-based protein docking program with pairwise potentials
-
Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins 2006; 65:392-406.
-
(2006)
Proteins
, vol.65
, pp. 392-406
-
-
Kozakov, D.1
Brenke, R.2
Comeau, S.R.3
Vajda, S.4
-
26
-
-
33645961330
-
Flexible protein-protein docking
-
Bonvin AM. Flexible protein-protein docking. Curr Opin Struct Biol 2006;16:194-200.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 194-200
-
-
Bonvin, A.M.1
-
27
-
-
46449084711
-
An iterative knowledge-based scoring function for protein-protein recognition
-
Huang S-Y, Zou X. An iterative knowledge-based scoring function for protein-protein recognition. Proteins 2008;72: 557-579.
-
(2008)
Proteins
, vol.72
, pp. 557-579
-
-
Huang, S.-Y.1
Zou, X.2
-
28
-
-
33846000313
-
Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking
-
Huang S-Y, Zou X. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking. Proteins 2007;66:399-421.
-
(2007)
Proteins
, vol.66
, pp. 399-421
-
-
Huang, S.-Y.1
Zou, X.2
-
29
-
-
33845923184
-
Efficient molecular docking of NMR structures: application to HIV-1 protease
-
Huang S-Y, Zou X. Efficient molecular docking of NMR structures: application to HIV-1 protease. Protein Sci 2007;16:43-51.
-
(2007)
Protein Sci
, vol.16
, pp. 43-51
-
-
Huang, S.-Y.1
Zou, X.2
-
30
-
-
0038359614
-
CAPRI: a critical assessment of predicted interactions
-
Janin J, Henrick K, Moult J, Ten Eyck L, Sternberg MJE, Vajda S, Vasker I, Wodak SJ. CAPRI: a critical assessment of predicted interactions. Proteins: Struct Funct Genet 2003;52:2-9.
-
(2003)
Proteins: Struct Funct Genet
, vol.52
, pp. 2-9
-
-
Janin, J.1
Henrick, K.2
Moult, J.3
Ten Eyck, L.4
Sternberg, M.J.E.5
Vajda, S.6
Vasker, I.7
Wodak, S.J.8
-
31
-
-
21644469377
-
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
-
Méndez R, Leplae R, Lensink MF, Wodak SJ. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 2005;60:150-169.
-
(2005)
Proteins
, vol.60
, pp. 150-169
-
-
Méndez, R.1
Leplae, R.2
Lensink, M.F.3
Wodak, S.J.4
-
32
-
-
36749006579
-
Docking and scoring protein complexes: CAPRI 3rd edition
-
Lensink MF, Wodak SJ, Méndez R. Docking and scoring protein complexes: CAPRI 3rd edition. Proteins 2007;69:704-718.
-
(2007)
Proteins
, vol.69
, pp. 704-718
-
-
Lensink, M.F.1
Wodak, S.J.2
Méndez, R.3
-
33
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost B, Sander C. Conservation and prediction of solvent accessibility in protein families. Proteins 1994;20:216-226.
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
34
-
-
33750555073
-
An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials
-
Huang S-Y, Zou X. An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials. J Comput Chem 2006;27:1865-1875.
-
(2006)
J Comput Chem
, vol.27
, pp. 1865-1875
-
-
Huang, S.-Y.1
Zou, X.2
-
35
-
-
33750574927
-
An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function
-
Huang S-Y, Zou X. An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function. J Comput Chem 2006;27:1876-1882.
-
(2006)
J Comput Chem
, vol.27
, pp. 1876-1882
-
-
Huang, S.-Y.1
Zou, X.2
-
37
-
-
21644480883
-
Protein-protein docking benchmark 2.0: an update
-
Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z. Protein-protein docking benchmark 2.0: an update. Proteins 2005;60:214-216.
-
(2005)
Proteins
, vol.60
, pp. 214-216
-
-
Mintseris, J.1
Wiehe, K.2
Pierce, B.3
Anderson, R.4
Chen, R.5
Janin, J.6
Weng, Z.7
-
38
-
-
0038526303
-
ZDOCK: an initial-stage protein-docking algorithm
-
Chen R, Li L, Weng ZP. ZDOCK: an initial-stage protein-docking algorithm. Proteins 2003;52:80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.P.3
-
39
-
-
45649084937
-
Structural and mutational analyses of the interaction between the barley alpha-amylase/subtilisin inhibitor and the subtilisin savinase reveal a novel mode of inhibition
-
Micheelsen PO, Vévodová J, De Maria L, Ostergaard PR, Friis EP, Wilson K, Skjøt M. Structural and mutational analyses of the interaction between the barley alpha-amylase/subtilisin inhibitor and the subtilisin savinase reveal a novel mode of inhibition. J Mol Biol 2008;380:681-690.
-
(2008)
J Mol Biol
, vol.380
, pp. 681-690
-
-
Micheelsen, P.O.1
Vévodová, J.2
De Maria, L.3
Ostergaard, P.R.4
Friis, E.P.5
Wilson, K.6
Skjøt, M.7
-
40
-
-
0026501813
-
Crystal structure of the alkaline proteinase Savinase from Bacillus lentus at 1.4 Å resolution
-
Betzel C, Klupsch S, Papendorf G, Hastrup S, Branner S, Wilson KS. Crystal structure of the alkaline proteinase Savinase from Bacillus lentus at 1.4 Å resolution. J Mol Biol 1992;223:427-445.
-
(1992)
J Mol Biol
, vol.223
, pp. 427-445
-
-
Betzel, C.1
Klupsch, S.2
Papendorf, G.3
Hastrup, S.4
Branner, S.5
Wilson, K.S.6
-
41
-
-
0032524130
-
Barley alpha-amylase bound to its endogenous protein inhibitor BASI: crystal structure of the complex at 1.9 A resolution
-
Vallée F, Kadziola A, Bourne Y, Juy M, Rodenburg KW, Svensson B, Haser R. Barley alpha-amylase bound to its endogenous protein inhibitor BASI: crystal structure of the complex at 1.9 A resolution. Structure 1998;6:649-659.
-
(1998)
Structure
, vol.6
, pp. 649-659
-
-
Vallée, F.1
Kadziola, A.2
Bourne, Y.3
Juy, M.4
Rodenburg, K.W.5
Svensson, B.6
Haser, R.7
-
42
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
43
-
-
0035866566
-
Differences in the specificities of the highly alkalophilic proteinases Savinase and Esperase imposed by changes in the rigidity and geometry of the substrate binding sites
-
Georgieva DN, Stoeva S, Voelter W, Genov N, Betzel C. Differences in the specificities of the highly alkalophilic proteinases Savinase and Esperase imposed by changes in the rigidity and geometry of the substrate binding sites. Arch Biochem Biophys 2001;387:197- 201.
-
(2001)
Arch Biochem Biophys
, vol.387
, pp. 197-201
-
-
Georgieva, D.N.1
Stoeva, S.2
Voelter, W.3
Genov, N.4
Betzel, C.5
-
44
-
-
17644379997
-
2005. Mutational analysis of target enzyme recognition of the b-trefoil fold barley aamylase/subtilisin inhibitor
-
Bøsager BC, Nielsen PK, Abou Hachem M, Fukuda K, Præorius-Ibba M, Svensson B. 2005. Mutational analysis of target enzyme recognition of the b-trefoil fold barley aamylase/subtilisin inhibitor. J Biol Chem 2005;280:14855-14864.
-
(2005)
J Biol Chem
, vol.280
, pp. 14855-14864
-
-
Bøsager, B.C.1
Nielsen, P.K.2
Abou Hachem, M.3
Fukuda, K.4
Præorius-Ibba, M.5
Svensson, B.6
-
45
-
-
0037188507
-
Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction
-
Xiang Z, Soto CS, Honig B. Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction. Proc Natl Acad Sci USA 2002;99:7432-7437.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7432-7437
-
-
Xiang, Z.1
Soto, C.S.2
Honig, B.3
-
46
-
-
38549154569
-
Loop modeling: sampling, filtering and scoring
-
Soto CS, Fasnacht M, Zhu J, Forrest L, Honig B. Loop modeling: sampling, filtering and scoring. Proteins 2008;70:834-843.
-
(2008)
Proteins
, vol.70
, pp. 834-843
-
-
Soto, C.S.1
Fasnacht, M.2
Zhu, J.3
Forrest, L.4
Honig, B.5
-
47
-
-
1642529580
-
Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site
-
Das K, Acton T, Chiang Y, Shih L, Arnold E, Montelione GT. Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site. Proc Natl Acad Sci USA 2004;101:4041-4046.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 4041-4046
-
-
Das, K.1
Acton, T.2
Chiang, Y.3
Shih, L.4
Arnold, E.5
Montelione, G.T.6
-
48
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom MA, Stuart A, Fiser A, Sánchez R, Melo F, Sali A. Comparative protein structure modeling of genes and genomes. Annu Rev Biophys Biomol Struct 2000;29:291-325.
-
(2000)
Annu Rev Biophys Biomol Struct
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.2
Fiser, A.3
Sánchez, R.4
Melo, F.5
Sali, A.6
-
49
-
-
77957937122
-
-
submitted
-
Najmudin S, Pinheiro BA, Prates JAM, Romao MJ, Fontes CMGA. Putting an N-terminal end to the Clostridium thermocellum xylanase Xyn10b story: Crystallographic structure of the CBM22-1-GH10 modules complexed with xylohexaose, submitted.
-
Putting an N-terminal end to the Clostridium thermocellum xylanase Xyn10b story: Crystallographic structure of the CBM22-1-GH10 modules complexed with xylohexaose
-
-
Najmudin, S.1
Pinheiro, B.A.2
Prates, J.A.M.3
Romao, M.J.4
Fontes, C.M.G.A.5
-
50
-
-
33646342512
-
Crystal structures of two bacterial 3-hydroxy-3-methylglutaryl-CoA lyases suggest a common catalytic mechanism among a family of TIM barrel metalloenzymes cleaving carbon-carbon bonds
-
Forouhar F, Hussain M, Farid R, Benach J, Abashidze M, Edstrom WC, Vorobiev SM, Xiao R, Acton TB, Fu Z, Kim JJ, Miziorko HM, Montelione GT, Hunt JF. Crystal structures of two bacterial 3-hydroxy-3-methylglutaryl-CoA lyases suggest a common catalytic mechanism among a family of TIM barrel metalloenzymes cleaving carbon-carbon bonds. J Biol Chem 2006;281:7533-7545.
-
(2006)
J Biol Chem
, vol.281
, pp. 7533-7545
-
-
Forouhar, F.1
Hussain, M.2
Farid, R.3
Benach, J.4
Abashidze, M.5
Edstrom, W.C.6
Vorobiev, S.M.7
Xiao, R.8
Acton, T.B.9
Fu, Z.10
Kim, J.J.11
Miziorko, H.M.12
Montelione, G.T.13
Hunt, J.F.14
-
51
-
-
70349205397
-
The structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4
-
Isabet T, Montagnac G, Regazzoni K, Raynal B, El Khadali F, England P, Franco M, Chavrier P, Houdusse A, Ménétrey J. The structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4. EMBO J 2009;28:2835-2845
-
(2009)
EMBO J
, vol.28
, pp. 2835-2845
-
-
Isabet, T.1
Montagnac, G.2
Regazzoni, K.3
Raynal, B.4
El Khadali, F.5
England, P.6
Franco, M.7
Chavrier, P.8
Houdusse, A.9
Ménétrey, J.10
-
52
-
-
23644438026
-
Structural basis for the activation of cholera toxin by human ARF6-GTP
-
O'Neal CJ, Jobling MG, Holmes RK, Hol WG. Structural basis for the activation of cholera toxin by human ARF6-GTP. Science 2005;309:1093-1096.
-
(2005)
Science
, vol.309
, pp. 1093-1096
-
-
O'Neal, C.J.1
Jobling, M.G.2
Holmes, R.K.3
Hol, W.G.4
-
53
-
-
0026331267
-
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil
-
O'shea EK, Klemm JD, Kim PS, Alber T. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science 1991;254:539-544.
-
(1991)
Science
, vol.254
, pp. 539-544
-
-
O'shea, E.K.1
Klemm, J.D.2
Kim, P.S.3
Alber, T.4
-
54
-
-
77957968707
-
-
submitted
-
Shen L, Tong Y, Tempel W, MacKenzie F, Arrowsmith CH, Edwards AM, Bountra C, Weigelt J, Bochkarev A, Park H. Crystal structure of full length centaurin alpha-1 bound with the FHA domain of KIF13B, submitted.
-
Crystal structure of full length centaurin alpha-1 bound with the FHA domain of KIF13B
-
-
Shen, L.1
Tong, Y.2
Tempel, W.3
MacKenzie, F.4
Arrowsmith, C.H.5
Edwards, A.M.6
Bountra, C.7
Weigelt, J.8
Bochkarev, A.9
Park, H.10
-
55
-
-
21044433466
-
Centaurin-alpha1 interacts directly with kinesin motor protein KIF13B
-
Venkateswarlu K, Hanada T, Chishti AH. Centaurin-alpha1 interacts directly with kinesin motor protein KIF13B. J Cell Sci 2005;118:2471-2484.
-
(2005)
J Cell Sci
, vol.118
, pp. 2471-2484
-
-
Venkateswarlu, K.1
Hanada, T.2
Chishti, A.H.3
-
56
-
-
70350355110
-
The ternary structure of double-headed arrowhead protease inhibitor API-A complexed with two trypsins reveals a novel reactive site conformation
-
Bao R, Zhou ZC, Jiang C, Lin SX, Chi CW, Chen Y. The ternary structure of double-headed arrowhead protease inhibitor API-A complexed with two trypsins reveals a novel reactive site conformation. J Biol Chem 2009;284:26676-26684
-
(2009)
J Biol Chem
, vol.284
, pp. 26676-26684
-
-
Bao, R.1
Zhou, Z.C.2
Jiang, C.3
Lin, S.X.4
Chi, C.W.5
Chen, Y.6
-
57
-
-
0028980848
-
Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface
-
Katz BA, Finer-Moore J, Mortezaei R, Rich DH, Stroud RM. Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface. Biochemistry 1995;34:8264-8280.
-
(1995)
Biochemistry
, vol.34
, pp. 8264-8280
-
-
Katz, B.A.1
Finer-Moore, J.2
Mortezaei, R.3
Rich, D.H.4
Stroud, R.M.5
-
58
-
-
0016318618
-
Mode of action of soybean trypsin inhibitor (Kunitz) as a model for specific protein-protein interactions
-
Blow DM, Janin J, Sweet RM. Mode of action of soybean trypsin inhibitor (Kunitz) as a model for specific protein-protein interactions. Nature 1974;249:54-57.
-
(1974)
Nature
, vol.249
, pp. 54-57
-
-
Blow, D.M.1
Janin, J.2
Sweet, R.M.3
-
59
-
-
0016291686
-
Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II. Crystallographic refinement at 1. 9 A resolution
-
Huber R, Kukla D, Bode W, Schwager P, Bartels K, Deisenhofer J, Steigemann W. Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II. Crystallographic refinement at 1.9 A resolution. J Mol Biol 1974;89:73-101.
-
(1974)
J Mol Biol
, vol.89
, pp. 73-101
-
-
Huber, R.1
Kukla, D.2
Bode, W.3
Schwager, P.4
Bartels, K.5
Deisenhofer, J.6
Steigemann, W.7
-
60
-
-
77953411220
-
The structural and energetic basis for high selectivity in a high affinity protein-protein interaction
-
Meenan NAG, Sharma A, Fleishman SJ, MacDonald C, Morel B, Boetzel R, Moore GR, Baker D, Kleanthous C. The structural and energetic basis for high selectivity in a high affinity protein-protein interaction. Proc Natl Acad Sci USA 2010;107:10080-10085.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10080-10085
-
-
Meenan, N.A.G.1
Sharma, A.2
Fleishman, S.J.3
MacDonald, C.4
Morel, B.5
Boetzel, R.6
Moore, G.R.7
Baker, D.8
Kleanthous, C.9
-
61
-
-
0034283147
-
Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
Kühlmann UC, Pommer AJ, Moore GR, James R, Kleanthous C. Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes. J Mol Biol 2000;301:1163-1178.
-
(2000)
J Mol Biol
, vol.301
, pp. 1163-1178
-
-
Kühlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
62
-
-
77953593958
-
Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer
-
Krachler AM, Sharma A, Kleanthous C. Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer. Proteins 2010;78:2131-2143.
-
(2010)
Proteins
, vol.78
, pp. 2131-2143
-
-
Krachler, A.M.1
Sharma, A.2
Kleanthous, C.3
-
63
-
-
0037648552
-
Design of stable alpha-helical arrays from an idealized TPR motif
-
Main ER, Xiong Y, Cocco MJ, D'Andrea L, Regan L. Design of stable alpha-helical arrays from an idealized TPR motif. Structure 2003;11:497-508.
-
(2003)
Structure
, vol.11
, pp. 497-508
-
-
Main, E.R.1
Xiong, Y.2
Cocco, M.J.3
D'Andrea, L.4
Regan, L.5
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