-
1
-
-
0346694551
-
Efflux as a mechanism of resistance to antimicrobials in Pseudomonas aeruginosa and related bacteria: Unanswered questions
-
Schweizer HP (2003) Efflux as a mechanism of resistance to antimicrobials in Pseudomonas aeruginosa and related bacteria: unanswered questions. Genet Mol Res 2: 48-62.
-
(2003)
Genet Mol Res
, vol.2
, pp. 48-62
-
-
Schweizer, H.P.1
-
2
-
-
33747154459
-
Multidrug-resistance efflux pumps - not just for resistance
-
Piddock LJV (2006) Multidrug-resistance efflux pumps - not just for resistance. Nat Rev Microbiol 4: 629-636.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 629-636
-
-
Piddock, L.J.V.1
-
3
-
-
33947260230
-
Molecular mechanisms of antibacterial multidrug resistance
-
Alekshun MN, Levy SB (2007) Molecular mechanisms of antibacterial multidrug resistance. Cell 128: 1037-1050.
-
(2007)
Cell
, vol.128
, pp. 1037-1050
-
-
Alekshun, M.N.1
Levy, S.B.2
-
4
-
-
34147214716
-
Multiple molecular mechanisms for multidrug resistance transporters
-
Higgins CF (2007) Multiple molecular mechanisms for multidrug resistance transporters. Nature 446: 749-757.
-
(2007)
Nature
, vol.446
, pp. 749-757
-
-
Higgins, C.F.1
-
5
-
-
24044514016
-
Efflux-mediated antimicrobial resistance
-
Poole K (2005) Efflux-mediated antimicrobial resistance. J Antimicrob Chemother 56: 20-51.
-
(2005)
J Antimicrob Chemother
, vol.56
, pp. 20-51
-
-
Poole, K.1
-
8
-
-
64649084606
-
Molecular dynamics simulations of membrane channels and transporters
-
Khalili-Araghi F, Gumbart J, Wen PC, Sotomayor M, Tajkhorshid E, et al. (2009) Molecular dynamics simulations of membrane channels and transporters. Curr Opin Struct Biol 19: 128-137.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 128-137
-
-
Khalili-Araghi, F.1
Gumbart, J.2
Wen, P.C.3
Sotomayor, M.4
Tajkhorshid, E.5
-
9
-
-
64649096369
-
Mechanisms of RND multidrug efflux pumps
-
Nikaido H, Takatsuka Y (2009) Mechanisms of RND multidrug efflux pumps. Biochim Biophys Acta 1794: 769-781.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 769-781
-
-
Nikaido, H.1
Takatsuka, Y.2
-
10
-
-
57049135864
-
The structure of the efflux pump AcrB in complex with bile acid
-
Drew D, Klepsch MM, Newstead S, Flaig R, Gier JWD, et al. (2008) The structure of the efflux pump AcrB in complex with bile acid. Mol Membr Biol 25: 677-682.
-
(2008)
Mol Membr Biol
, vol.25
, pp. 677-682
-
-
Drew, D.1
Klepsch, M.M.2
Newstead, S.3
Flaig, R.4
Gier, J.W.D.5
-
11
-
-
0029845913
-
Multidrug efflux pumps of Gram-negative bacteria
-
Nikaido H (1996) Multidrug efflux pumps of Gram-negative bacteria. J Bacteriol 178: 5853-5859.
-
(1996)
J Bacteriol
, vol.178
, pp. 5853-5859
-
-
Nikaido, H.1
-
12
-
-
52449111750
-
Membrane permeability and regulation of drug influx and efflux in Enterobacterial pathogens
-
Davin-Regli A, Bolla JM, James CE, Lavigne JP, Chevalier J, et al. (2008) Membrane permeability and regulation of drug influx and efflux in Enterobacterial pathogens. Curr Drug Targets 9: 750-759.
-
(2008)
Curr Drug Targets
, vol.9
, pp. 750-759
-
-
Davin-Regli, A.1
Bolla, J.M.2
James, C.E.3
Lavigne, J.P.4
Chevalier, J.5
-
13
-
-
10044231647
-
Interaction between the TolC and AcrA proteins of a multidrug efflux system of Escherichia coli
-
Husain F, Humbard M, Misra R (2004) Interaction between the TolC and AcrA proteins of a multidrug efflux system of Escherichia coli. J Bacteriol 186: 8533-8536.
-
(2004)
J Bacteriol
, vol.186
, pp. 8533-8536
-
-
Husain, F.1
Humbard, M.2
Misra, R.3
-
14
-
-
3242890387
-
Interactions underlying assembly of the Escherichia coli AcrAB-TolC multidrug efflux system
-
Touzé T, Eswaran J, Bokma E, Koronakis E, Hughes C, et al. (2004) Interactions underlying assembly of the Escherichia coli AcrAB-TolC multidrug efflux system. Mol Microbiol 53: 697-706.
-
(2004)
Mol Microbiol
, vol.53
, pp. 697-706
-
-
Touzé, T.1
Eswaran, J.2
Bokma, E.3
Koronakis, E.4
Hughes, C.5
-
15
-
-
3542998054
-
AcrA, AcrB, and TolC of Escherichia coli form a stable intermembrane multidrug efflux complex
-
Tikhonova EB, Zgurskaya HI (2004) AcrA, AcrB, and TolC of Escherichia coli form a stable intermembrane multidrug efflux complex. J Biol Chem 279: 32116-32124.
-
(2004)
J Biol Chem
, vol.279
, pp. 32116-32124
-
-
Tikhonova, E.B.1
Zgurskaya, H.I.2
-
16
-
-
34548491825
-
Assembly of the MexAB-OprM multidrug pump of Pseudomonas aeruginosa: Component interactions defined by the study of pump mutant suppressors
-
Nehme D, Poole K (2007) Assembly of the MexAB-OprM multidrug pump of Pseudomonas aeruginosa: component interactions defined by the study of pump mutant suppressors. J Bacteriol 189: 6118-6127.
-
(2007)
J Bacteriol
, vol.189
, pp. 6118-6127
-
-
Nehme, D.1
Poole, K.2
-
17
-
-
64649087897
-
Structural and functional diversity of bacterial membrane fusion proteins
-
Zgurskaya HI, Yamada Y, Tikhonova EB, Ge Q, Krishnamoorthy G (2009) Structural and functional diversity of bacterial membrane fusion proteins. Biochim Biophys Acta 1794: 794-807.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 794-807
-
-
Zgurskaya, H.I.1
Yamada, Y.2
Tikhonova, E.B.3
Ge, Q.4
Krishnamoorthy, G.5
-
18
-
-
52449124145
-
Structure and mechanism of drug efflux machinery in Gram-negative bacteria
-
Pietras Z, Bavro VN, Furnham N, Pellegrini-Calace M, Milner-White EJ, et al. (2008) Structure and mechanism of drug efflux machinery in Gram-negative bacteria. Curr Drug Targets 9: 719-728.
-
(2008)
Curr Drug Targets
, vol.9
, pp. 719-728
-
-
Pietras, Z.1
Bavro, V.N.2
Furnham, N.3
Pellegrini-Calace, M.4
Milner-White, E.J.5
-
19
-
-
64649089196
-
Assembly and transport mechanism of tripartite drug efflux systems
-
Misra R, Bavro V (2009) Assembly and transport mechanism of tripartite drug efflux systems. Biochim Biophys Acta 1794: 817-25.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 817-825
-
-
Misra, R.1
Bavro, V.2
-
20
-
-
0028365952
-
Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport
-
Saier MH, Tam R, Reizer A, Reizer J (1994) Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport. Mol Microbiol 11: 841-847.
-
(1994)
Mol Microbiol
, vol.11
, pp. 841-847
-
-
Saier, M.H.1
Tam, R.2
Reizer, A.3
Reizer, J.4
-
21
-
-
67049115572
-
A coordinated network of transporters with overlapping specificities provides a robust survival strategy
-
Tal N, Schuldiner S (2009) A coordinated network of transporters with overlapping specificities provides a robust survival strategy. Proc Natl Acad Sci USA 106: 9051-9056.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9051-9056
-
-
Tal, N.1
Schuldiner, S.2
-
22
-
-
18244403495
-
A novel MATE family efflux pump contributes to the reduced susceptibility of laboratory-derived Staphylococcus aureus mutants to tigecycline
-
McAleese F, Petersen P, Ruzin A, Dunman PM, Murphy E, et al. (2005) A novel MATE family efflux pump contributes to the reduced susceptibility of laboratory-derived Staphylococcus aureus mutants to tigecycline. Antimicrob Agents Chemother 49: 1865-1871.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 1865-1871
-
-
McAleese, F.1
Petersen, P.2
Ruzin, A.3
Dunman, P.M.4
Murphy, E.5
-
23
-
-
0034702177
-
Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export
-
Koronakis V, Sharff A, Koronakis E, Luisi B, Hughes C (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature 405: 914-919.
-
(2000)
Nature
, vol.405
, pp. 914-919
-
-
Koronakis, V.1
Sharff, A.2
Koronakis, E.3
Luisi, B.4
Hughes, C.5
-
24
-
-
33644833626
-
Conformational flexibility in the multidrug efflux system protein AcrA
-
Mikolosko J, Bobyk K, Zgurskaya HI, Ghosh P (2006) Conformational flexibility in the multidrug efflux system protein AcrA. Structure 14: 577-587.
-
(2006)
Structure
, vol.14
, pp. 577-587
-
-
Mikolosko, J.1
Bobyk, K.2
Zgurskaya, H.I.3
Ghosh, P.4
-
25
-
-
66349137043
-
The assembled structure of a complete tripartite bacterial multidrug efflux pump
-
Symmons M, Bokma E, Koronakis E, Hughes C, Koronakis V (2009) The assembled structure of a complete tripartite bacterial multidrug efflux pump. Proc Natl Acad Sci USA 106: 7173-7178.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7173-7178
-
-
Symmons, M.1
Bokma, E.2
Koronakis, E.3
Hughes, C.4
Koronakis, V.5
-
26
-
-
0032173598
-
Multiple antibiotic resistance and efflux
-
Nikaido H (1998) Multiple antibiotic resistance and efflux. Curr Opin Microbiol 1: 516-523.
-
(1998)
Curr Opin Microbiol
, vol.1
, pp. 516-523
-
-
Nikaido, H.1
-
27
-
-
0037057652
-
Crystal structure of bacterial multidrug efflux transporter AcrB
-
Murakami S, Nakashima R, Yamashita E, Yamaguchi A (2002) Crystal structure of bacterial multidrug efflux transporter AcrB. Nature 419: 587-593.
-
(2002)
Nature
, vol.419
, pp. 587-593
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Yamaguchi, A.4
-
28
-
-
52449109122
-
The AcrB efflux pump: Conformational cycling and peristalsis lead to multidrug resistance
-
Seeger MA, Diederichs K, Eicher T, Brandstätter L, Schiefner A, et al. (2008) The AcrB efflux pump: conformational cycling and peristalsis lead to multidrug resistance. Curr Drug Targets 9: 729-749.
-
(2008)
Curr Drug Targets
, vol.9
, pp. 729-749
-
-
Seeger, M.A.1
Diederichs, K.2
Eicher, T.3
Brandstätter, L.4
Schiefner, A.5
et al6
-
29
-
-
49549088341
-
Multidrug efflux transporter, AcrB-the pumping mechanism
-
Murakami S (2008) Multidrug efflux transporter, AcrB-the pumping mechanism. Curr Opin Struct Biol 18: 459-465.
-
(2008)
Curr Opin Struct Biol
, vol.18
, pp. 459-465
-
-
Murakami, S.1
-
30
-
-
33748670458
-
Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
-
Murakami S, Nakashima R, Yamashita E, Matsumoto T, Yamaguchi A (2006) Crystal structures of a multidrug transporter reveal a functionally rotating mechanism. Nature 443: 173-179.
-
(2006)
Nature
, vol.443
, pp. 173-179
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Matsumoto, T.4
Yamaguchi, A.5
-
31
-
-
33748310520
-
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism
-
Seeger MA, Schiefner A, Eicher T, Verrey F, Diederichs K, et al. (2006) Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism. Science 313: 1295-1298.
-
(2006)
Science
, vol.313
, pp. 1295-1298
-
-
Seeger, M.A.1
Schiefner, A.2
Eicher, T.3
Verrey, F.4
Diederichs, K.5
-
32
-
-
33846363597
-
Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors
-
Sennhauser G, Amstutz P, Briand C, Storchenegger O, Grütter MG (2007) Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors. PLoS Biol 5: e7.
-
(2007)
PLoS Biol
, vol.5
-
-
Sennhauser, G.1
Amstutz, P.2
Briand, C.3
Storchenegger, O.4
Grütter, M.G.5
-
33
-
-
38849185972
-
Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB
-
Seeger MA, von Ballmoos C, Eicher T, Brandstätter L, Verrey F, et al. (2008) Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB. Nat Struct Mol Biol 15: 199-205.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 199-205
-
-
Seeger, M.A.1
von Ballmoos, C.2
Eicher, T.3
Brandstätter, L.4
Verrey, F.5
-
34
-
-
63049131979
-
Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism
-
Takatsuka Y, Nikaido H (2009) Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism. J Bacteriol 191: 1729-1737.
-
(2009)
J Bacteriol
, vol.191
, pp. 1729-1737
-
-
Takatsuka, Y.1
Nikaido, H.2
-
35
-
-
57349135305
-
Sitedirected mutagenesis reveals putative substrate binding residues in the Escherichia coli RND efflux pump AcrB
-
Bohnert JA, Schuster S, Seeger MA, Fáehnrich E, Pos KM, et al. (2008) Sitedirected mutagenesis reveals putative substrate binding residues in the Escherichia coli RND efflux pump AcrB. J Bacteriol 190: 8225-8229.
-
(2008)
J Bacteriol
, vol.190
, pp. 8225-8229
-
-
Bohnert, J.A.1
Schuster, S.2
Seeger, M.A.3
Fáehnrich, E.4
Pos, K.M.5
-
36
-
-
58749106615
-
Gating at both ends and breathing in the middle: Conformational dynamics of TolC
-
Vaccaro L, Scott KA, Sansom MS (2008) Gating at both ends and breathing in the middle: Conformational dynamics of TolC. Biophys J 95: 5681-5691.
-
(2008)
Biophys J
, vol.95
, pp. 5681-5691
-
-
Vaccaro, L.1
Scott, K.A.2
Sansom, M.S.3
-
37
-
-
67649402299
-
KTransitions between closed and open conformations of TolC: The effects of ions in simulations
-
Schulz R, Kleinekathöfer U (2009) Transitions between closed and open conformations of TolC: The effects of ions in simulations. Biophys J 96: 3116-3125.
-
Biophys J
, vol.96
, pp. 3116-3125
-
-
Schulz, R.1
Kleinekathöfer, U.2
-
38
-
-
33745686037
-
Flexibility in a drug transport accessory protein: Molecular dynamics simulations of MexA
-
Vaccaro L, Koronakis V, Sansom MS (2006) Flexibility in a drug transport accessory protein: molecular dynamics simulations of MexA. Biophys J 91: 558-564.
-
(2006)
Biophys J
, vol.91
, pp. 558-564
-
-
Vaccaro, L.1
Koronakis, V.2
Sansom, M.S.3
-
39
-
-
0027794972
-
Targeted molecular-dynamics simulation of conformational change - application to the T- R transition in insulin
-
Schlitter J, Engels M, Kruger P, Jacoby E, Wollmer A (1993) Targeted molecular-dynamics simulation of conformational change - application to the T- R transition in insulin. Mol Simul 10: 291-308.
-
(1993)
Mol Simul
, vol.10
, pp. 291-308
-
-
Schlitter, J.1
Engels, M.2
Kruger, P.3
Jacoby, E.4
Wollmer, A.5
-
40
-
-
0036073866
-
A dynamic analysis of the rotation mechanism for conformational change in F1-ATPase
-
Ma J, Flynn TC, Cui Q, Leslie AGW, Walker JE, et al. (2002) A dynamic analysis of the rotation mechanism for conformational change in F1-ATPase. Structure 10: 921-931.
-
(2002)
Structure
, vol.10
, pp. 921-931
-
-
Ma, J.1
Flynn, T.C.2
Cui, Q.3
Leslie, A.G.W.4
Walker, J.E.5
-
41
-
-
34249904963
-
Targeted molecular dynamics simulation studies of binding and conformational changes in E. Coli MurD
-
Perdih A, Kotnik M, Hodoscek M, Solmajer T (2007) Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD. Proteins 68: 243-254.
-
(2007)
Proteins
, vol.68
, pp. 243-254
-
-
Perdih, A.1
Kotnik, M.2
Hodoscek, M.3
Solmajer, T.4
-
42
-
-
66749085629
-
Comparison of three perturbation molecular dynamics methods for modeling conformational transitions
-
Huang H, Ozkirimli E, Post CB (2009) Comparison of three perturbation molecular dynamics methods for modeling conformational transitions. J Chem Theor Comp 5: 1304-1314.
-
(2009)
J Chem Theor Comp
, vol.5
, pp. 1304-1314
-
-
Huang, H.1
Ozkirimli, E.2
Post, C.B.3
-
43
-
-
65249172043
-
Kinetic behavior of the major multidrug efflux pump AcrB of Escherichia coli
-
Nagano K, Nikaido H (2009) Kinetic behavior of the major multidrug efflux pump AcrB of Escherichia coli. Proc Natl Acad Sci USA 106: 5854-5858.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5854-5858
-
-
Nagano, K.1
Nikaido, H.2
-
44
-
-
70349452052
-
Structural and functional aspects of the multidrug efflux pump AcrB
-
Eicher T, Brandstaetter L, Pos MK (2009) Structural and functional aspects of the multidrug efflux pump AcrB. Biol Chem 390: 693-699.
-
(2009)
Biol Chem
, vol.390
, pp. 693-699
-
-
Eicher, T.1
Brandstaetter, L.2
Pos, M.K.3
-
45
-
-
0032922174
-
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat
-
Cheatham T, Cieplak P, Kollman P (1999) A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat. J Biomol Struct Dyn 16: 845-862.
-
(1999)
J Biomol Struct Dyn
, vol.16
, pp. 845-862
-
-
Cheatham, T.1
Cieplak, P.2
Kollman, P.3
-
47
-
-
0344796204
-
Ion-water interaction potentials derived from free energy perturbation simulations
-
Aaqvist J (1990) Ion-water interaction potentials derived from free energy perturbation simulations. J Phys Chem 94: 8021-8024.
-
(1990)
J Phys Chem
, vol.94
, pp. 8021-8024
-
-
Aaqvist, J.1
-
49
-
-
0029633186
-
Amber, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculationsto simulate the structural and energetic properties of molecules
-
Pearlman DA, Case DA, Caldwell JW, Ross WR, Cheatham III TE, et al. (1995) Amber, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculationsto simulate the structural and energetic properties of molecules. Comp Phys Commun 91: 1-41.
-
(1995)
Comp Phys Commun
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.R.4
Cheatham III, T.E.5
-
50
-
-
77955484996
-
-
Gaussian 03, Revision C.02. Wallingford, CT: Gaussian, Inc
-
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, et al. (2004) Gaussian 03, Revision C.02. Wallingford, CT: Gaussian, Inc.
-
(2004)
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
-
51
-
-
34547372334
-
Performance of the general amber force field in modeling aqueous POPC membrane bilayers
-
Jójárt B, Martinek TAA (2007) Performance of the general amber force field in modeling aqueous POPC membrane bilayers. J Comput Chem 28: 2051-2058.
-
(2007)
J Comput Chem
, vol.28
, pp. 2051-2058
-
-
Jójárt, B.1
Martinek, T.A.A.2
-
52
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, et al. (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26: 1781-1782.
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1782
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
-
53
-
-
0034665864
-
A dynamic model for the allosteric mechanism of GroEL
-
Ma J, Sigler PB, Xu Z, Karplus M (2000) A dynamic model for the allosteric mechanism of GroEL. J Mol Biol 302: 303-313.
-
(2000)
J Mol Biol
, vol.302
, pp. 303-313
-
-
Ma, J.1
Sigler, P.B.2
Xu, Z.3
Karplus, M.4
|