Lizards as model organisms for linking phylogeographic and speciation studies

Molecular Ecology

Volumn 19, Issue 16, 2010, Pages 3250-3270

  Camargo, Arley ^a   Sinervo, Barry ^b   Sites Jr , Jack W ^a  

^a BRIGHAM YOUNG UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

adaptation; divergence; lizards; molecular markers; phylogeography; speciation

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; GENETIC DRIFT; GENETIC SELECTION; GENETICS; GEOGRAPHY; LIZARD; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS; REVIEW; SPECIES DIFFERENTIATION;

ANIMALS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENETIC DRIFT; GENETIC SPECIATION; GENETICS, POPULATION; GEOGRAPHY; LIZARDS; PHYLOGENY; SELECTION, GENETIC;

SQUAMATA;

EID: 77955358770     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04722.x     Document Type: Review

References (235)

1. Avise JC (2000) Phylogeography, the History and Formation of Species. Harvard University Press, Cambridge.
2. Avise JC (2009) Phylogeography: retrospect and prospect. Journal of Biogeography, 36, 3 15.
3. Avise JC, Arnold J, Ball Jr. RM et al. (1987) Intraspecific phylogeography, the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489 522.
4. Barraclough TG, Vogler AP (2000) Detecting the geographical pattern of speciation from species-level phylogenies. American Naturalist, 155, 419 434.
5. Barrowclough GF, Zink RM (2009) Funds enough, and time: mtDNA, nuDNA and the discovery of divergence. Molecular Ecology, 18, 2934 2936.
6. Barton NH, Gale KS (1993) Genetic analysis of hybrid zones. In : Hybrid Zones and the Evolutionary Proces (ed. Harrison RG pp. 13 45, Oxford University Press, Oxford.
7. Barton NH, Hewitt GM (1985) Analysis of hybrid zones. Annual Review of Ecology and Systematics, 16, 113 148.
8. Beaumont MA, Nielsen R, Robert C et al. (2010) In defence of model-based inference in phylogeography. Molecular Ecology, 19, 436 446.
9. Beheregaray LB (2008) Twenty years of phylogeography, the state of the field and the challenges for the Southern Hemisphere. Molecular Ecology, 17, 3754 3774.
10. Blackburn DG (2006) Squamate reptiles as model organisms for the evolution of viviparity. Herpetological Monographs, 20, 131 146.
11. Bleay C, Sinervo B (2007) Discrete genetic variation in mate choice and a condition dependent preference function in the side blotched lizard: implications for the formation and maintenance of co-adapted gene complexes. Behavioral Ecology, 18, 304 310.
12. Brandley MC, Huelsenbeck JP, Wiens JJ (2008) Rates and patterns in the evolution of snake-like body form in squamate reptiles, evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms. Evolution, 62, 2042 2064.
13. Brito PH, Edwards SV (2009) Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica, 135, 439 455.
14. Brumfield RT, Liu L, Lum DE, Edwards SV (2008) Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae: Manacus) from multilocus sequence data. Systematic Biology, 57, 719 731.
15. Buckley LB (2008) Linking traits to energetics and population dynamics to predict lizard ranges in changing environments. American Naturalist, 171, E1 E19.
16. Buckley D (2009) Toward an organismal, integrative, and iterative phylogeography. Bioessays, 31, 784 793.
17. Bull CM (2000) Monogamy in lizards. Behavioral Processes, 2000, 7 20.
18. Butlin R (1989) Reinforcement of premating isolation. In : Speciation and Its Consequence (eds Otte D, Endler JA pp. 158 179, Sinauer Associates, Sunderland, MA.
19. Butlin RK, Galindo J, Grahame JW (2008) Sympatric, parapatric or allopatric: the most important way to classify speciation? Phylosophical Transactions of the Royal Society Series B: Biological Sciences, 363, 2997 3007.
20. Butlin RK, Bridle J, Schluter D (eds 2009) Speciation and Patterns of Diversity. Cambridge University Press, Cambridge.
21. Calsbeek R (2008) An ecological twist on the morphology-performance- fitness axis. Evolutionary Ecology Research, 10, 197 212.
22. Calsbeek R, Sinervo B (2007) Correlational selection and the evolution of alternative morphs, experimental manipulations of territory quality and nest-site quality. Evolution, 61, 1071 1083.
23. Calsbeek R, Smith TB (2007) Probing the adaptive landscape using experimental islands, density dependent natural selection on lizard body size. Evolution, 61, 1052 1061.
24. Carnaval AC, Moritz C (2008) Historical climate modeling predicts patterns of current biodiversity in the Brazilian Atlantic forest. Journal of Biogeography, 35, 1187 1201.
25. Carnaval AC, Hickerson MJ, Haddad CFB, Rodrigues MT, Moritz C (2009) Stability predicts genetic diversity in the Brazilian Atlantic Forest hotspot. Science, 323, 785 789.
26. Carstens BC, Dewey TA (2010) Species delimitation using a combined coalescent and information theoretic approach: an example from North American Myotis bats. Systematic Biology.
27. Carstens BC, Knowles LL (2007) Estimating species phylogeny from gene tree probabilities despite incomplete lineage sorting, an example from Melanoplus grasshoppers. Systematic Biology, 56, 400 411.
28. Conover DO, Schultz ET (1995) Phenotypic similarity and the evolutionary significance of countergradient variation. Trends in Ecology and Evolution, 10, 248 252.
29. Conover DO, Duffy TA, Hice LA (2009) The covariance between genetic and environmental influences across ecological gradients. Annals of the New York Academy of Sciences, 1168, 100 129.
30. Conrad JL (2008) Phylogeny and systematics of Squamata (Reptilia) based on morphology. Bulletin of the American Museum of Natural History, 310, 1 182.
31. Cooper Jr. WE, Perez-Mellado V, Vitt LJ (2004) Ease and effectiveness of costly autotomy vary with predation intensity among lizard populations. Journal of Zoology, 262, 243 255.
32. Corl A, Davis AR, Kuchta SR, Comendant T, Sinervo B (2010a) Alternative mating strategies and the evolution of sexual size dimorphism in the side-blotched lizard, Uta stansburiana: a population-level comparative analysis. Evolution, 64, 79 96.
33. Corl A, Davis AR, Kuchta SR, Sinervo B (2010b) Selective loss of polymorphic mating types is associated with rapid phenotypic evolution during morphic speciation. Proceedings of the National Academy of Sciences, USA, 107, 4254 4259.
34. Côte J, Le Galliard J-F, Rossi J-M, Fitze PS (2008) Environmentally induced changes in carotenoid-based coloration of female lizards, a comment on Vercken et al. Journal of Evolutionary Biology, 21, 1165 1172.
35. Coyne JA, Orr HA (2004) Speciation. Sinauer Associates Inc., Sunderland, MA.
36. Davis EB, Koo MS, Conroy C, Patton JL, Moritz C (2008) The California hotspots project: identifying regions of rapid diversification of mammals. Molecular Ecology, 17, 120 138.
37. Degnan JH, Rosenberg NA (2009) Gene tree discordance, phylogenetic inference, and the multispecies coalescent. Trends in Ecology and Evolution, 24, 332 340.
38. Dixon CJ (2006) A means of estimating the completeness of haplotype sampling using the Stirling probability distribution. Molecular Ecology Notes, 6, 650 652.
39. Dolman G, Moritz C (2006) A multilocus perspective on refugial isolation and divergence in rainforest skinks (Carlia). Evolution, 60, 573 582.
40. Edwards SV (2009) Is a new and general theory of molecular systematics emerging? Evolution, 63, 1 19.
41. Edwards SV, Beerli P (2000) Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution, 54, 1839 1854.
42. Felsenstein J (2006) Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci? Molecular Biology and Evolution, 23, 691 700.
43. Fox SF, McCoy JK, Baird TA (eds 2003) Lizard Social Behavior. The Johns Hopkins University Press, Baltimore and London.
44. de Fraitpont M, Clobert J, Barbault R (1996) The evolution of oviparity with egg guarding and viviparity in lizards and snakes: a phylogenetic analysis. Evolution, 50, 391 400.
45. Futuyma DJ (2005) Progress on the origin of species. PLoS Biology, 3, e62.
46. Garrick RC, Caccone A, Sunnucks P (2010) Inference of population history by coupling exploratory and model-driven phylogeographic analysis. International Journal of Molecular Sciences, 11, 1190 1227.
47. Gavrilets S (2004) Fitness Landscapes and the Origin of Species. Monographs in Population Biology 41. Princeton University Press, Princeton.
48. Gay L, Neubauer G, Zagalska-Neubauer M, Pons J-M, Bell DA, Crochet P-A (2009) Speciation with gene flow in the large white-headed gulls: does selection counterbalance introgression? Heredity, 102, 133 146.
49. Gifford ME, Larson A (2008) In situ genetic divergence in Ameiva chrysolaema: a multilocus perspective. Molecular Phylogenetics and Evolution, 49, 277 291.
50. Godinho R, Crespo EG, Ferrand N (2008) The limits of mtDNA phylogeography: complex patterns of population history in a highly structured Iberian lizard are only revealed by the use of nuclear markers. Molecular Ecology, 17, 4670 4683.
51. Goodman BA (2007) Divergent morphologies, performance, and escape behaviour in two tropical rock-using lizards (Reptilia, Scincidae). Biological Journal of the Linnean Society, 91, 85 98.
52. Graham CH, Ron SR, Santos JC, Schneider CJ, Moritz C (2004) Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs. Evolution, 58, 1781 1793.
53. Greer AE (1991) Limb reduction in squamates, identification of the lineages and discussion of the trends. Journal of Herpetology, 25, 166 173.
54. Guillette Jr. LJ (1993) The evolution of viviparity in lizards. BioScience, 43, 742 751.
55. Haldane JBS (1957) The cost of natural selection. Journal of Genetics, 55, 511 524.
56. Harmon LJ, Gibson R (2006) Multivariate phenotypic evolution among island and mainland populations of the ornate day gecko, Phelsuma ornata. Evolution, 60, 2622 2632.
57. Harmon LJ, Kolbe JJ, Cheverud JM, Losos JB (2005) Convergence and the multidimensional niche. Evolution, 59, 409 421.
58. Harmon LJ, Harmon LL, Jones CG (2007) Competition and community structure in diurnal arboreal geckos (genus Phelsuma) in the Indian Ocean. Oikos, 116, 1863 1878.
59. Harmon LJ, Melville J, Larson A, Losos JB (2008) The role of geography and ecological opportunity in the diversification of day geckos (Phelsuma). Systematic Biology, 57, 562 573.
60. Heled J, Drummond AJ (2008) Bayesian inference of popoulation size history from multiple loci. BMC Evolutionary Biology, 8, 289.
61. Heled J, Drummond AJ (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570 580.
62. Hendry AP (2009) Speciation. Science, 458, 162 164.
63. Herrel A, Huyghe K, Vanhooydonck B et al. (2008) Rapid large scale evolutionary divergence in morphology and performance associated with exploitation of a different dietary resource. Proceedings of the National Academy of Sciences of the USA, 105, 4792 4795.
64. Hewitt GM (2001) Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Molecular Ecology, 10, 537 549.
65. Hey J (2009) On the arbitrary identification of real species. In : Speciation and Patterns of Diversit (eds Butlin RK, Bridle J, Schluter D pp. 15 28, Cambridge University Press, Cambridge.
66. Hey J, Nielsen R (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747 760.
67. Hickerson MJ, Stahl EA, Lessios HA (2006) Test for simultaneous divergence using approximate Bayesian computation. Evolution, 60, 2435 2453.
68. Hickerson MJ, Carstens BC, Cavender-Bares J et al. (2010) 20 years after Avise et al. 1987: Comparative phylogeography fulfilling original promise by integrating with emerging fields. Molecular Phylogenetics and Evolution, 54, 291 301.
69. Hochberg M, Sinervo B, Brown S (2003) Social-mediated speciation. Evolution, 57, 154 158.
70. Hofmann S, Henle K (2006) Male reproductive success and intrasexual selection in the common lizard determined by DNA-microsatellites. Journal of Herpetology, 40, 1 6.
71. Hoskin CJ, Higgie M, McDonald KR, Moritz C (2005) Reinforcement drives rapid allopatric speciation. Nature, 437, 1353 1356.
72. Hua X, Wiens JJ (2010) Latitutudinal variation in speciation mechanisms in frogs. Evolution, 64, 429 443.
73. Huey RB (1982) Temperature, physiology, and the ecology of reptiles. In : Biology of the Reptilia, Vol. 12: Physiology C (eds Gans C, Pough FH pp. 25 91, Academic Press, London.
74. Huey RB, Pianka ER, Schoener TW (eds 1983) Lizard Ecology. Studies of a Model Organism. Harvard University Press, Cambridge.
75. Hurt C, Anker A, Knowlton N (2009) A multilocus test of simultaneous divergence across the isthmus of Panamá using snapping shrimp in the genus Alpheus. Evolution, 63, 514 530.
76. Irschick DJ (2000) Comparative and behavioral analyses of preferred speed: Anolis lizards as a model system. Physiological and Biochemical Zoology, 73, 428 437.
77. Kearney M (2006) Habitat, environment, and niche, what are we modeling? Oikos, 115, 186 191.
78. Kearney M, Porter WP (2004) Mapping the fundamental niche, Physiology, climate, and the distribution of a nocturnal lizard. Ecology, 85, 3119 3131.
79. Kearney M, Porter W (2009) Mechanistic niche modeling: combining physiological and spatial data to predict species' ranges. Ecology Letters, 12, 334 350.
80. Kearney M, Fujita MK, Ridenour J (2009) Lost sex, in reptiles constraints and correlations. In : Lost Se (eds Schön I, Martens K, van Dijk P pp. 447 474, Sprinter Scientific, Dordrecht.
81. Kidd DM, Ritchie MG (2006) Phylogeographic information systems: putting the geography into phylogeography. Journal of Biogeography, 33, 1851 1865.
82. Knowles LL (2004) The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17, 1 10.
83. Knowles LL (2008) Why does a method that fails continue to be used? Evolution, 62, 2713 2717.
84. Knowles LL (2009) Statistical phylogeography. Annual Review of Evolution, Ecology, and Systematics, 40, 593 612.
85. Knowles LL, Carstens BC (2007a) Estimating a geographically explicit model of population divergence. Evolution, 61, 477 493.
86. Knowles LL, Carstens BC (2007b) Delimiting species without monophyletic gene trees. Systematic Biology, 56, 887 895.
87. Knowles LL, Carstens BC, Keat ML (2007) Coupled genetic and ecological niche models to examine how past population distributions contribute to divergence. Current Biology, 17, 1 7.
88. Kozak KH, Wiens JJ (2006) Does niche conservatism drive speciation? A case study in North American salamanders. Evolution, 60, 2604 2621.
89. Kozak KH, Graham CH, Wiens JJ (2008) Integrating GIS data into evolutionary studies. Trends in Ecology and Evolution, 23, 141 148.
90. Kubatko L, Carstens BC, Knowles LL (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics, 25, 971 973.
91. Kuhner MK (2008) Coalescent genealogy samples: windows into population history. Trends in Ecology and Evolution, 24, 86 93.
92. Lancaster L, Hipsley C, Sinervo B (2009) Female choice for optimal combinations of multiple male display traits increases offspring survival. Behavioral Ecology, 20, 993 999.
93. Lande R, Shannon S (1996) The role of genetic variation in adaptation and population persistence in a changing environment. Evolution, 50, 434 437.
94. Lapointe F-J, Rissler LJ (2005) Congruence, consensus, and the comparative phylogeography of codistributed species in California. American Naturalist, 166, 290 299.
95. Leaché AD (2009) Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus). Systematic Biology, 58, 547 559.
96. Leaché AD, Cole CJ (2007) Hybridization between multiple fence lizard lineages in an ecotone: locally discordante variation in mitochondrial DNA, chromosomes, and morphology. Molecular Ecology, 16, 1035 1054.
97. Leaché AD, Reeder TW (2002) Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and bayesian approaches. Systematic Biology, 51, 44 68.
98. Leaché AD, Crews SC, Hickerson MJ (2007) Two waves of diversification in mammals and reptiles of Baja California revealed by hierarchical Bayesian analysis. Biology Letters, 3, 646 650.
99. Leaché AD, Koo MS, Spencer CL, Papenfuss TJ, Fisher RN, McGuire JM (2009) Quantifying ecological, morphological, and phylogenetic divergence to delimit in the coast horned lizard species complex (genus Phrynosoma). Proceedings of the National Academy of Sciences, USA, 106, 12418 12423.
100. Lee MSY, Reeder TW, Slowinski JB, Lawson R (2004) Resolving reptile relationships, molecular and morphological markers. In : Assembling the Tree of Lif (eds Cracraft J, Donoghue MJ pp. 451 467, Oxford University Press, New York.
101. Lemmon AR, Moriarty-Lemmon E (2008) A likelihood framework for estimating phylogeographic history on a continuous landscape. Systematic Biology, 57, 544 561.
102. Levene H (1953) Genetic equilibrium when more than one ecological niche is available. American Naturalist, 87, 331 335.
103. Liu L, Pearl DK (2007) Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology, 56, 504 514.
104. Liu L, Pearl DK, Brumfield RT, Edwards SV (2008) Estimating species trees using multiple-allele DNA sequence data. Evolution, 62, 2080 2091.
105. Losos JB (2008) Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. Ecology Letters, 11, 995 1003.
106. Losos JB (2009) Lizards in an Evolutionary Tree, Ecology and Adaptive Radiation of Anoles. University of California Press, Berkeley, CA.
107. Losos JB, Glor RE (2003) Phylogenetic comparative methods and the geography of speciation. Trends in Ecology and Evolution, 18, 220 227.
108. Losos JB, Warheit KI, Creer D (1997) Adaptive differentiation following experimental island colonization in Anolis lizards. Nature, 387, 70 73.
109. Losos JB, Creer DA, Glossip D et al. (2000) Evolutionary implications of phenotypic plasticity in the hindlimb of the lizard Anolis sagrei. Evolution, 54, 301 305.
110. Losos JB, Schoener TW, Warheit KI, Creer DA (2001) Experimental studies of adaptive differentiation in Bahamian Anolis lizards. Genetica, 112-113, 399 415.
111. Losos JB, Schoener TW, Langerhans RB, Spiller DA (2006) Rapid temporal reversal in predator-driven natural selection. Science, 314, 1111.
112. Luke C (1986) Convergent evolution of lizard toe fringes. Biological Journal of the Linnean Society, 27, 1 16.
113. MacArthur RH, Wilson EO (1967) The Theory of Island Biogeography. Princeton University Press, Princeton.
114. Maddison WP, Knowles LL (2006) Inferring phylogeny despite incomplete lineage sorting. Systematic Biology, 55, 21 30.
115. Marshall JC, Sites Jr. JW (2001) A comparison of nuclear and mitochondrial cline shapes in a hybrid zone in the Sceloporus grammicus complex (Squamata, Phrynosomatidae). Molecular Ecology, 10, 435 449.
116. Marshall JC, Arévalo E, Benavides E, Sites Jr. JW (2006) Delimiting species, comparing methods for Mendelian characters using lizards of the Sceloporus grammicus (Squamata, Phrynosomatidae) complex. Evolution, 60, 1050 1065.
117. Maynard-Smith J (1966) Sympatric speciation. American Naturalist, 100, 637 650.
118. Mayr E (1942) Systematics and the Origin of Species, from the Viewpoint of a Zoologist. Harvard University Press, Cambridge.
119. Mayr E (1963) Animal Species and Evolution. Harvard University Press, Cambridge.
120. McCormack J, Zellmer A, Knowles LL (2010) Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests of niche evolution. Evolution, 64, 1231 1244.
121. McGuire JA, Linkem CW, Koo M et al. (2007) Mitochondrial introgression and incomplete lineage sorting through space and time: phylogenetics of crotaphytid lizards. Evolution, 61, 2879 2897.
122. Medel RG, Jiménez JE, Fox SF, Jaksic FM (1988) Experimental evidence that high population frequencies of lizard tail autotomy indicate inefficient predation. Oikos, 53, 321 324.
123. Milstead WW (ed 1967) Lizard Ecology, A Symposium. University of Missouri Press, Columbia.
124. Monahan WB (2009) A mechanistic niche model for measuring species' distributional responses to seasonal temperature gradients. PLoS ONE, 4, e7921.
125. Morando M, Avila LJ, Sites Jr. JW (2003) Sampling strategies for delimiting species, genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata; Liolaemidae) in Andean-Patagonian South America. Systematic Biology, 52, 159 185.
126. Moriarty-Lemmon E, Lemmon AR, Cannatella DC (2007) Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris). Evolution, 61, 2086 2103.
127. Moritz C, Patton JL, Schneider CJ, Smith TB (2000) Diversification of rainforest faunas: an integrated molecular approach. Annual Review of Ecology and Systematics, 31, 533 563.
128. Moritz C, Hoskin CJ, MacKenzie JB et al. (2009) Identification and dynamics of a cryptic suture zone in tropical rainforest. Proceedings of the Royal Society of London Series B: Biological Sciences, 276, 1235 1244.
129. Morrison RL, Rand MS, Frost-Mason SK (1995) Cellular basis of color differences in three morphs of the lizard Sceloporus undulatus erythrocheilus. Copeia, 1995, 397 408.
130. Mossel E, Roch S (2010) Incomplete lineage sorting: consistent phylogeny estimation from multiple loci. Transactions on Computational Biology and Bioinformatics, 7, 166 171.
131. Moussalli A, Moritz C, Williams SE, Carnaval AC (2009) Variable responses of skinks to a common history of rainforest fluctuation: concordance between phylogeography and palaeo-distribution models. Molecular Ecology, 18, 483 499.
132. Navas C (2002) Herpetological diversity along Andean elevational gradients: links with physiological ecology and evolutionary physiology. Comparative Biochemistry and Physiology, Part A Molecular and Integrative Physiology, 133, 469 485.
133. Naya DE, Veloso C, Muñoz JL, Bozinovic F (2007) Some vaguely explored (but not trivial) costs of tail autotomy in lizards. Comparative Biochemistry and Physiology, 146A, 189 193.
134. Nielsen R, Beaumont MA (2009) Statistical inferences in phylogeography. Molecular Ecology, 18, 1034 1047.
135. Nosil P (2008) Speciation with gene flow could be common. Molecular Ecology, 17, 2103 2106.
136. Nosil P (2009) Adaptive population divergence in cryptic color-pattern following a reduction in gene flow. Evolution, 63, 1902 1912.
137. Nosil P, Egan SP, Funk DJ (2008) Heterogeneous genomic differentiation between walking-stick ecotypes: 'isolation by adaptation' and multiple roles for divergent selection. Evolution, 62, 316 336.
138. Nosil P, Funk DJ, Ortiz-Barrientos D (2009) Divergent selection and heterogenous genomic divergence. Molecular Ecology, 18, 375 402.
139. Ogden R, Thorpe RS (2002) Molecular evidence for ecological speciation in tropical habitats. Proceedings of the National Academy of Sciences of the USA, 99, 13612 13615.
140. Olsson M, Healy M, Wapstra E, Uller T (2009) Testing the quality of a carrier: a field experiment on lizard signalers. Evolution, 63, 695 701.
141. O'Meara BC (2010) New heuristic methods for joint species delimitation and species tree inference. Systematic Biology, 59, 59 73.
142. Padial JM, De la Riva I (2006) Taxonomic inflation and the stability of species lists: the perils of ostrich's behavior. Systematic Biology, 55, 859 867.
143. Pafilis P, Foufopoulos J, Poulakakis N, Lymberakis P, Valakos ED (2009) Tail shedding in island lizards (Lacertidae, Reptilia): decline of antipredator defenses in relaxed predation environments. Evolution, 63, 1262 1278.
144. Petit RJ, Excoffier L (2009) Gene flow and species delimitation. Trends in Ecology and Evolution, 24, 386 393.
145. Phillimore AB, Orme CDL, Thomas GH et al. (2008) Sympatric speciation in birds is rare: insights from range data and simulations. American Naturalist, 171, 646 657.
146. Phillips SJ, Dudík M (2008) Modelling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography, 31, 161 175.
147. Phillips BL, Baird SJE, Moritz C (2004) When vicars meet: a narrow contact zone between phylogeographic lineages of the rainforest skink, Carlia rubrigularis. Evolution, 58, 1536 1548.
148. Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231 259.
149. Pianka ER (1970) On r and K selection. American Naturalist, 104, 592 597.
150. Pianka ER, Parker WS (1975) Age-specific reproductive tactics. American Naturalist, 109, 453 464.
151. Pianka ER, Vitt LJ (2003) Lizards: Windows to the Evolution of Diversity. University of California Press, Berkeley, CA.
152. Porter WP, Budaraju S, Stewart WE, Ramankutty N (2000) Calculating climate effects on birds and mammals: impcts on biodiversity, conservation, population parameters, and global community structure. American Zoologist, 40, 173 183.
153. Pough FH, Andrews RM, Cadle JE, Crump ML, Savitzky AH, Wells KD (2004) Herpetology, 3rd edn. Pearson Prentice Hall, Upper Saddle River, NJ.
154. Price TD (2008) Speciation in Birds, Roberts and Company Publishers, Greenwood Village, CO.
155. de Queiroz K (1998) The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations. In : Endless Forms: Species and Speciatio (eds Howard DJ, Berlocher SH pp. 57 75, Oxford University Press, Oxford.
156. Raxworthy CJ, Ingram C, Rabibisoa N, Pearson R (2007) Applications of ecological niche modeling for species delimitation: a review and empirical evaluation using day geckos (Phelsuma) from Madagascar. Systematic Biology, 56, 907 923.
157. Reed KM, Sites Jr. JW (1995) Female fecundity in a hybrid zone between two cytotypes of the Sceloporus grammicus complex (Sauria, Phrynosomatidae). Evolution, 49, 61 69.
158. Reed KM, Greenbaum IF, Sites Jr. JW (1995a) Cytogenetic analysis of chromosomal intermediates from a hybrid zone between two chromosome races of the Sceloporus grammicus complex (Sauria, Phrynosomatidae). Evolution, 49, 37 47.
159. Reed KM, Greenbaum IF, Sites Jr. JW (1995b) Dynamics of a novel chromosomal polymorphism within a hybrid zone between two chromosome races of the Sceloporus grammicus complex (Sauria, Phrynosomatidae). Evolution, 49, 48 60.
160. Reilly SM, McBrayer LB, Miles DB (eds 2007) Lizard Ecology: the Evolutionary Consequences of Foraging Mode. Cambridge University Press, Cambridge.
161. Remington CL (1968) Suture-zones of hybrid interaction between recently joined biotas. In : Evolutionary Biology (eds Dobzhansky T, Hecht MK, Steere WC pp. 321 428, Plenum Press, New York, NY.
162. Revell LJ, Harmon LJ, Collar DC (2008) Phylogenetic signal, evolutionary process, and rate. Systematic Biology, 57, 591 601.
163. Richards CL, Knowles LL (2007) Tests of phenotypic and genetic concordance and their application to the conservation of Panamanian golden frogs (Anura, Bufonidae). Molecular Ecology, 16, 3119 3133.
164. Richards CL, Carstens BC, Knowles LL (2007) Distribution modeling and statistical phylogeography, an integrative framework for generating and testing alternative biogeographic hypotheses. Journal of Biogeography, 34, 1833 1845.
165. Riddle BR, Dawson MN, Hadly EA et al. (2008) The role of molecular genetics in sculpting the future of integrative biogeography. Progress in Physical Geography, 32, 173 202.
166. Rissler LJ, Apodaca JJ (2007) Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus). Systematic Biology, 56, 924 942.
167. Rosenblum EB (2005) The role of phenotypic plasticity in color variation in Tularosa Basin lizards. Copeia, 2005, 586 596.
168. Rosenblum EB (2006) Convergent evolution and divergent selection, lizards at the White Sands ecotone. American Naturalist, 167, 1 15.
169. Rosenblum EB, Novembre J (2007) Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. Journal of Heredity, 98, 331 336.
170. Rosenblum EB, Hoekstra HE, Nachman MW (2004) Adaptive reptile color variation and the evolution of the Mc1r gene. Evolution, 58, 1794 1808.
171. Rosenblum EB, Hickerson MJ, Moritz C (2007) A multilocus perspective on colonization accompanied by selection and gene flow. Evolution, 61, 2971 2985.
172. Rosenblum EB, Römpler H, Schöneberg T, Hoekstra HE (2010) Molecular and functional basis of phenotypic convergence in white lizards at White Sands. Proceedings of the National Academy of Sciences, USA, 107, 2113 2117.
173. Roughgarden J (1995) Anolis Lizards of the Caribbean: Ecology, Evolution, and Plate Tectonics. Oxford Series in Ecology and Evolution. Oxford University Press, New York, NY.
174. Rundell RJ, Price TD (2009) Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation. Trends in Ecology and Evolution, 24, 394 399.
175. Rundle HD, Nosil P (2005) Ecological speciation. Ecology Letters, 8, 336 352.
176. Schluter D (2009) Evidence for ecological speciation and its alternative. Science, 323, 737 741.
177. Schneider CJ (2008) Exploiting genomic resources in studies of speciation and adaptive radiation of lizards in the genus Anolis. Integrative and Comparative Biology, 48, 520 526.
178. Schneider CJ, Smith TB, Larison B, Moritz C (1999) A test of alternative models of diversification in tropical rainforests: ecological gradients vs. rainforest refugia. Proceedings of the National Academy of Sciences of the USA, 96, 13869 13873.
179. Schulte II. JA, Valladares JP, Larson A (2003) Phylogenetic relationships within iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards. Herpetologica, 59, 399 419.
180. Sinervo B, Clobert J (2008) Life history strategies, multidimensional trade-offs and behavioural syndromes. In : Behavioral Ecology: An Evolutionary Perspective on Behaviou (eds Danchin E, Giraldeau L-A, Cézilly F pp. 135 183, Oxford University Press, Oxford.
181. Sinervo B, Huey RB (1990) Allometric engineering, an experimental test of the causes of interpopulational differences in performance. Science, 248, 1106 1109.
182. Sinervo B, McAdam AG (2008) Maturational costs of reproduction due to clutch size and ontogenetic conflict as revealed in the invisible fraction. Proceedings of the Royal Society of London Series B: Biological Sciences, 275, 629 638.
183. Sinervo B, Svensson EI (2002) Correlational selection and the evolution of genomic architecture. Heredity, 89, 329 338.
184. Sinervo B, Svensson EI, Comendant T (2000) Density cycles and an offspring quantity and quality game driven by natural selection. Nature, 406, 985 988.
185. Sinervo B, Bleay C, Adamopoulou C (2001) Social causes of correlational selection and the resolution of a heritable throat colour polymorphism in a lizard. Evolution, 55, 2040 2052.
186. Sinervo B, Chaine A, Clobert J et al. (2006) Self-recognition, color signals and cycles of greenbeard mutualism and transient altruism. Proceedings of the National Academy of Sciences, USA, 102, 7372 7377.
187. Sinervo B, Heulin B, Surget-Groba Y et al. (2007) Models of density-dependent genic selection and a new rock-paper-scissors social system. American Naturalist, 170, 663 680.
188. Sinervo B, Clobert J, Miles DB, McAdam AG, Lancaster LT (2008) The role of pleiotropy versus signaler-receiver gene epistasis in life history trade-offs: dissecting the genomic architecture of organismal design in social systems. Heredity, 101, 197 207.
189. Sinervo B, Méndez-de-la-Cruz F, Miles DB, Heulin B et al. (2010) Rapid erosion of lizard diversity at global scales: altered thermal niches due to climate change. Science, 328, 894 899.
190. Sites Jr. JW, Davis SK (1989) Phylogenetic relationships and molecular variability within and among six chromosome races of Sceloporus grammicus (Sauria, Iguanidae), based on nuclear and mitochondrial markers. Evolution, 43, 296 317.
191. Sites Jr. JW, Marshall JC (2003) Delimiting species: a Renaissance issue in systematic biology. Trends in Ecology and Evolution, 18, 462 470.
192. Sites Jr. JW, Marshall JC (2004) Operational criteria for delimiting species. Annual Review of Ecology, Evolution, and Systematics, 35, 199 227.
193. Sites Jr. JW, Barton NH, Reed KM (1995) The genetic structure of a hybrid zone between two chromosome races of the Sceloporus grammicus complex (Sauria, Phrynosomatidae) in Central Mexico. Evolution, 49, 9 36.
194. Sites Jr. JW, Basten CJ, Asmussen MA (1996) Cytonuclear genetic structure of a hybrid zone in lizards of the Sceloporus grammicus complex (Sauria, Phrynosomatidae). Molecular Ecology, 5, 379 392.
195. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology, 35, 627 632.
196. Sobel JM, Chen GF, Watt LR, Schemske DW (2010) The biology of speciaton. Evolution, 64, 295 315.
197. Strasburg JL, Kearney M, Moritz C, Templeton AR (2007) Combining phylogeography with distribution modeling: multiple Pleistocene range expansions in a parthenogenetic gecko from the Australian arid zone. PLoS ONE, 2, e760.
198. Stuart-Fox D, Godinho R, Irwin N et al. (2009a) Can scent-mediated female mate preference explain an abrupt mtDNA cline in Lacerta schreiberi? Behaviour, 146, 831 841.
199. Stuart-Fox D, Godinho R, de Bellocq JG et al. (2009b) Variation in phenotype, parasite load and male competitive ability across a cryptic hybrid zone. PLoS ONE, 4, e5677.
200. Swenson NG (2008) The past and future influence of geographic information systems on hybrid zone, phylogeographic and speciation research. Journal of Evolutionary Biology, 21, 421 434.
201. Swenson NG, Howard DJ (2004) Do suture zones exist? Evolution, 58, 2391 2397.
202. Templeton AR (2001) Using phylogeographic analyses of gene trees to test species status and processes. Molecular Ecology, 10, 779 791.
203. Templeton AR (2004) Statistical phylogeography: methods of evaluating and minimizing inference erros. Molecular Ecology, 13, 789 809.
204. Templeton AR (2009a) Statistical hypothesis testing in intraspecific phylogeography: nested clade phylogeographical analysis vs. approximate Bayesian computation. Molecular Ecology, 18, 319 331.
205. Templeton AR (2009b) Why does a method that fails continue to be used? The answer. Evolution, 63, 807 812.
206. Templeton AR (2010a) Coalescent-based, maximum likelihood inference in phylogeography. Molecular Ecology, 19, 431 435.
207. Templeton AR (2010b) Coherent and incoherent inference in phylogeography and human evolution. Proceedings of the National Academy of Sciences, 107 (14 6376 6381, doi:.
208. Templeton AR, Maskas SD, Cruzan MB (2000) Gene trees: a powerful tool for exploring the evolutionary biology of species and speciation. Plant Species Biology, 15, 211 222.
209. Thorpe RS (2002) Analysis of color spectra in comparative evolutionary studies: molecular phylogeny and habitat adaptation in the St. Vincent anole (Anolis trinitatis). Systematic Biology, 51, 554 569.
210. Thorpe RS, Stenson AG (2003) Phylogeny, paraphyly and ecological adaptation of the colour and pattern in the Anolis roquet complex on Martinique. Molecular Ecology, 12, 117 132.
211. Thorpe RS, Black H, Malhotra A (1996) Matrix correspondence tests on the DNA phylogeny of the Tenerife lacertid elucidate both historical causes and morphological adaptation. Systematic Biology, 45, 335 343.
212. Tinkle DW, Wilbur HM, Tilley SG (1970) Evolutionary strategies in lizard reproduction. Evolution, 24, 55 74.
213. Townsend TM, Larson A, Louis E, Macey JR (2004) Molecular phylogenetics of Squamata, the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Systematic Biology, 53, 735 757.
214. Tracy CR (1982) Biophysical modelling in reptilian physiology and ecology. In : Biology of the Reptilia Volume 1 (eds Gans C, Pough FH pp. 275 321, Academic Press, London.
215. Van Damme R, Entin P, Vanhooydonck B, Herrel A (2008) Causes of sexual dimorphism in performance traits: a comparative approach. Evolutionary Ecology Research, 10, 229 250.
216. Vercken E, Sinervo B, Clobert J (2008) Colour variation in female common lizards: why we should speak of morphs, a reply to Côte et al. Journal of Evolutionary Biology, 21, 1160 1164.
217. Vervust B, Grbac I, Van Damme R (2007) Differences in morphology, performance and behaviour between recently diverged populations of Podarcis sicula mirror differences in predation pressure. Oikos, 116, 1343 1352.
218. Victoriano PF, Ortiz JC, Benavides E, Adams BJ, Sites Jr. JW (2008) Comparative phylogeography of codistributed species of Chilean Liolaemus (Squamata: Tropiduridae). Molecular Ecology, 17, 2397 2416.
219. Vidal N, Hedges SB (2005) The phylogeny of squamate reptiles (snakes, lizards, and amphisbaenians) inferred from nine nuclear protein-coding genes. Comptes Rendus Biologies, 328, 1000 1008.
220. Vitt LJ, Caldwell JP (2009) Herpetology, 3rd edn: An Introductory Biology of Amphibians and Reptiles. Academic Press, New York, NY.
221. Vitt LJ, Pianka ER (eds 1994) Lizard Ecology: Historical and Experimental Perspectives. Princeton University Press, Princeton, NJ.
222. Warren DL, Glor RE, Turelli M (2008) Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution. Evolution, 62, 2868 2883.
223. Werneck F, Costa G, Colli G, Prado D, Sites Jr. JW (accepted) Revisiting the Seasonally Dry Tropical Forests historical distribution: new insights based on palaeodistribution modeling and palynological evidence.
224. West-Eberhard MJ (1983) Sexual selection, social competition and speciation. Quarterly Review of Biology, 58, 155 183.
225. West-Eberhard MJ (1986) Alternative adaptations, speciation and phylogeny. Proceedings of the National Academy of Sciences, USA, 83, 1388 1392.
226. West-Eberhard MJ (2003) Developmental Plasticity and Evolution, Oxford University Press, Oxford.
227. Wiens JJ (2004a) What is speciation and how should we study it? American Naturalist, 163, 914 923.
228. Wiens JJ (2004b) Speciation and ecology revisited, phylogenetic niche conservatism and the origin of species. Evolution, 58, 193 197.
229. Wiens JJ (2007) Species delimitation: new approaches for discovering diversity. Systematic Biology, 56, 875 878.
230. Wiens JJ, Graham CH (2005) Niche conservatism, integrating evolution, ecology, and conservation biology. Annual Review of Ecology Evolution and Systematics, 36, 519 539.
231. Wiens JJ, Penkrot TL (2002) Delimiting species based on DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Systematic Biology, 51, 69 91.
232. Wiens JJ, Brandley MC, Reeder TW (2006) Why does a trait evolve multiple times within a clade? Repeated evolution of snake-like body form in squamate reptiles. Evolution, 61, 123 141.
233. Yang Z, Rannala B (2010) Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Sciences, doi:.
234. Zimmermann NE, Edwards Jr. TC, Moisen GG, Frescino TS, Blackard JA (2007) Remote sensing-based predictors improve distribution models of rare, early successional and broadleaf tree species in Utah. Journal of Applied Ecology, 44, 1057 1067.
235. Zink RM, Barrowclough GF (2008) Mitochondrial DNA under siege in avian phylogeography. Molecular Ecology, 17, 2107 2121. A. Camargo is interested in the use of coalescent methods for species delimitation and phylogeography; B. Sinervo is interested in the evolution of social behaviours and social systems and their role in macroevolutionary processes; and J.W. Sites, Jr is interested in phylogeography, speciation patterns and hybrid zone interactions.