Why does a method that fails continue to be used? The answer

Evolution

Volumn 63, Issue 4, 2009, Pages 807-812

  Templeton, Alan R ^a  

^a WASHINGTON UNIVERSITY   (United States)

Author keywords

Computer simulation; Nested clade analysis; Phylogeography; Statistics

Indexed keywords

COMPUTER SIMULATION; METHODOLOGY; NOTE; PHYLOGENY; STANDARD; STATISTICAL ANALYSIS; STATISTICS;

COMPUTER SIMULATION; DATA INTERPRETATION, STATISTICAL; PHYLOGENY; STATISTICS AS TOPIC;

EID: 62749114326     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00600.x     Document Type: Note

References (15)

1. Beaumont, M. A., and M. Panchal. 2008. On the validity of nested clade phylogeographical analysis. Mol. Ecol. 17 : 2563 2565.
2. Gifford, M. E., and A. Larson. 2008. In situ genetic differentiation in a Hispaniolan lizard (Ameiva chrysolaema): a multilocus perspective. Mol. Phylogenet. Evol. 49 : 277 291.
3. Knowles, L. L. 2008. Why does a method that fails continue to be used? Evolution 62 : 2713 2717.
4. Knowles, L. L., and W. P. Maddison. 2002. Statistical phylogeography. Mol. Ecol. 11 : 2623 2635.
5. Palsbøll, P. J., M. Berube, A. Aguilar, G. Notarbartolo-Di-Sciara, and R. Nielsen. 2004. Discerning between recurrent gene flow and recent divergence under a finite-site mutation model applied to North Atlantic and Mediterranean Sea fin whale (Balaenoptera physalus) populations. Evolution 58 : 670 675.
6. Panchal, M., and M. A. Beaumont. 2007. The automation and evaluation of nested clade phylogeographic analysis. Evolution 61 : 1466 1480.
7. Sokal, R. R., and F. J. Rohlf. 1995. Biometry. W. H. Freeman & Company, San Francisco.
8. Templeton, A. R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7 : 381 397.
9. Templeton, A. R. 2002. Out of Africa again and again. Nature 416 : 45 51.
10. Templeton, A. R. 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Mol. Ecol. 13 : 789 809.
11. Templeton, A. R. 2005. Haplotype trees and modern human origins. Yearbook Phys. Anthropol. 48 : 33 59.
12. Templeton, A. R. 2007. Population biology and population genetics of Pleistocene Hominins. Pp. 1825 1859 in W. Henke, and I. Tattersall, eds. Handbook of Palaeoanthropology. Springer-Verlag, Berlin.
13. Templeton, A. R. 2008. Nested clade analysis: an extensively validated method for strong phylogeographic inference. Mol. Ecol. 17 : 1877 1880.
14. Templeton, A. R. 2009. Statistical hypothesis testing in intraspecific phylogeography: nested clade phylogeographic analysis vs. approximate Bayesian computation. Mol. Ecol. 18 : 319 331.
15. Templeton, A. R., E. Routman, and C. Phillips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the Tiger Salamander, Ambystoma tigrinum. Genetics 140 : 767 782.