Phylogeography: Retrospect and prospect

Journal of Biogeography

Volumn 36, Issue 1, 2009, Pages 3-15

  Avise, John C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Biogeography; Coalescent theory; Gene trees; Mitochondrial DNA; Phylogeny; Population genetics

Indexed keywords

BIOASSAY; BIOGEOGRAPHY; MITOCHONDRIAL DNA; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION GENETICS;

EID: 57549094170     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2008.02032.x     Document Type: Review

References (32)

1. Avise, J.C. (1992) Molecular population structure and the biogeographic history of a regional fauna: a case history with lessons for conservation biology. Oikos, 63, 62 76.
2. Avise, J.C. (1995) Mitochondrial DNA polymorphism and a connection between genetics and demography of relevance to conservation. Conservation Biology, 9, 686 690.
3. Avise, J.C. (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, MA.
4. Avise, J.C. (2007) Twenty-five key evolutionary insights from the phylogeographic revolution in population genetics. Phylogeography of southern European refugia (ed. by S. Weiss N. Ferrand pp. 7 21. Springer, Dordrecht.
5. Avise, J.C. Ball, R.M., Jr. (1990) Principles of genealogical concordance in species concepts and biological taxonomy. Oxford Surveys in Evolutionary Biology, 7, 45 67.
6. Avise, J.C., Giblin-Davidson, C., Laerm, J., Patton, J.C. Lansman, R.A. (1979) Mitochondrial DNA clones within and among geographic populations of the pocket gopher, Geomys pinetis. Proceedings of the National Academy of Sciences USA, 76, 6694 6698.
7. Avise, J.C., Helfman, G.S., Saunders, N.C. Hales, L.S. (1986) Mitochondrial DNA differentiation in North Atlantic eels: population genetic consequences of an unusual life history pattern. Proceedings of the National Academy of Sciences USA, 83, 4350 4354.
8. Avise, J.C., Arnold, J., Ball, R.M., Jr., Bermingham, E., Lamb, T., Neigel, J.E., Reeb, C.A. Saunders, N.C. (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489 522.
9. Avise, J.C., Ball, R.M., Jr. Arnold, J. (1988) Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Molecular Biology and Evolution, 5, 331 334.
10. Baker, C.S., Perry, A., Bannister, J.L., Weinrich, M.T., Abernethy, R.B., Calambokidis, J., Lien, J., Lambertsen, R.H., Urban Ramirez, J., Vasquez, O., Clapham, P.J., Alling, A., O'Brien, S.J. Palumbi, S.R. (1993) Abundant mitochondrial DNA variation and world-wide population structure in humpback whales. Proceedings of the National Academy of Sciences USA, 90, 8239 8243.
11. Ball, R.M., Jr., James, F.C., Freeman, S., Bermingham, E. Avise, J.C. (1988) Phylogeographic population structure of red-winged blackbirds assessed by mitochondrial DNA. Proceedings of the National Academy of Sciences USA, 85, 1558 1562.
12. Bermingham, E. Moritz, C. (eds 1998) Comparative phylogeography: concepts and applications. Molecular Ecology, 7 (Special Issue 367 545.
13. Bermingham, E., McCafferty, S.S. Martin, A.P. (1997) Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus. Molecular systematics of fishes (ed. by T.D. Kocher C.A. Stepien pp. 113 128. Academic Press, San Diego, CA.
14. Bernardi, G., Sordino, P. Powers, D.A. (1993) Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus. Proceedings of the National Academy of Sciences USA, 90, 9271 9274.
15. Bowen, B.W. Avise, J.C. (1996) Conservation genetics of marine turtles. Conservation genetics: case histories from nature (ed. by J.C. Avise J.L. Hamrick pp. 190 237. Chapman & Hall, New York.
16. Bowen, B.W., Meylan, A.B. Avise, J.C. (1989) An odyssey of the green sea turtle: Ascension Island revisited. Proceedings of the National Academy of Sciences USA, 86, 573 576.
17. Brown, W.M., George, M., Jr. Wilson, A.C. (1979) Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences USA, 76, 1967 1971.
18. Burton, R.S. Lee, B.-N. (1994) Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus. Proceedings of the National Academy of Sciences USA, 91, 5197 5201.
19. Dawkins, R. (1995) River out of Eden. Basic Books, New York.
20. Demesure, B., Comps, B. Petit, R.J. (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50, 2515 2520.
21. Excoffier, L. (ed. 2004) Analytical methods in phylogeography. Molecular Ecology, 13 (Special Issue 727 980.
22. Gaston, K.J., Chown, S.L. Evans, K.L. (2008) Ecogeographical rules: elements of a synthesis. Journal of Biogeography, 35, 483 500.
23. Hare, M.P. (2001) Prospects for nuclear gene phylogeography. Trends in Ecology and Evolution, 16, 700 706.
24. Hewitt, G. (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913.
25. Hudson, R.R. (1990) Gene genealogies and the coalescent process. Oxford Surveys in Evolutionary Biology, 7, 1 44.
26. Knowles, L.L. (2008) Statistical phylogeography: the use of coalescent approaches to infer evolutionary history. Annual Review of Ecology, Evolution, and Systematics, 39, in press.
27. Knowles, L.L. Maddison, W.P. (2002) Statistical phylogeography. Molecular Ecology, 11, 2623 2635.
28. Knowlton, N., Weight, L.A., Solózano, L.A., Mills, D.K. Bermingham, E. (1993) Divergence of proteins, mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science, 260, 1629 1632.
29. Palmer, J.D. (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends in Genetics, 6, 115 120.
30. Templeton, A.R. (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
31. Weiss, S. Ferrand, N. (eds 2006) The phylogeography of southern European refugia. Springer, Dordrecht.
32. Wenink, P.W., Baker, A.J., Rösner, H.-U. Tilanus, M.G.J. (1996) Global mitochondrial DNA phylogeography of holarctic breeding dunlins (Calidris alpina). Evolution, 50, 318 330.