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Volumn 166, Issue 2, 2005, Pages 290-299

Congruence, consensus, and the comparative phylogeography of codistributed species in California

Author keywords

California; Comparative phylogeography; Maximum agreement subtrees; Supertrees

Indexed keywords

DIVERGENCE; PHYLOGEOGRAPHY;

EID: 23044447420     PISSN: 00030147     EISSN: None     Source Type: Journal    
DOI: 10.1086/431283     Document Type: Article
Times cited : (115)

References (72)
  • 1
    • 0035173201 scopus 로고    scopus 로고
    • Comparative phylogeography as an integrative approach to historical biogeography
    • Arbogast, B. S., and G. J. Kenagy. 2001. Comparative phylogeography as an integrative approach to historical biogeography. Journal of Biogeography 38:819-825.
    • (2001) Journal of Biogeography , vol.38 , pp. 819-825
    • Arbogast, B.S.1    Kenagy, G.J.2
  • 2
    • 0031979043 scopus 로고    scopus 로고
    • The history and purview of phylogeography: A personal reflection
    • Avise, J. C. 1998. The history and purview of phylogeography: a personal reflection. Molecular Ecology 7:371-379.
    • (1998) Molecular Ecology , vol.7 , pp. 371-379
    • Avise, J.C.1
  • 5
    • 0032774013 scopus 로고    scopus 로고
    • Phylogeography of spotted owl (Strix occidentalis) populations based on mitochondrial DNA sequences: Gene flow, genetic structure, and a novel biogeographic pattern
    • Barrowclough, G. F., R. J. Gutierrez, and J. G. Groth. 1999. Phylogeography of spotted owl (Strix occidentalis) populations based on mitochondrial DNA sequences: gene flow, genetic structure, and a novel biogeographic pattern. Evolution 53:919-931.
    • (1999) Evolution , vol.53 , pp. 919-931
    • Barrowclough, G.F.1    Gutierrez, R.J.2    Groth, J.G.3
  • 6
    • 0002844544 scopus 로고
    • Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
    • Baum, B. R. 1992. Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon 41:3-10.
    • (1992) Taxon , vol.41 , pp. 3-10
    • Baum, B.R.1
  • 7
    • 0000510472 scopus 로고    scopus 로고
    • Comparative phylogeography: Concepts and applications
    • Bermingham, E., and C. Moritz. 1998. Comparative phylogeography: concepts and applications. Molecular Ecology 7:367-369.
    • (1998) Molecular Ecology , vol.7 , pp. 367-369
    • Bermingham, E.1    Moritz, C.2
  • 10
    • 0032936412 scopus 로고    scopus 로고
    • Building large trees by combining phylogenetic information: A complete phylogeny of the extant Carnivora (Mammalia)
    • Bininda-Emonds, O. R. P., J. L. Gittleman, and A. Purvis. 1999. Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia). Biological Reviews 74:143-175.
    • (1999) Biological Reviews , vol.74 , pp. 143-175
    • Bininda-Emonds, O.R.P.1    Gittleman, J.L.2    Purvis, A.3
  • 12
    • 0022248153 scopus 로고
    • Historical ecology: A new approach to studying the evolution of ecological associations
    • Brooks, D. R. 1985. Historical ecology: a new approach to studying the evolution of ecological associations. Annals of the Missouri Botanical Garden 72:660-680.
    • (1985) Annals of the Missouri Botanical Garden , vol.72 , pp. 660-680
    • Brooks, D.R.1
  • 14
    • 0038138131 scopus 로고    scopus 로고
    • Patterns of molecular evolution and diversification in a biodiversity hotspot: The California Floristic Province
    • Calsbeek, R., J. N. Thompson, and J. E. Richardson. 2003. Patterns of molecular evolution and diversification in a biodiversity hotspot: the California Floristic Province. Molecular Ecology 12:1021-1029.
    • (2003) Molecular Ecology , vol.12 , pp. 1021-1029
    • Calsbeek, R.1    Thompson, J.N.2    Richardson, J.E.3
  • 15
    • 84874963529 scopus 로고    scopus 로고
    • Reconstructing the paleotopography of mountain belts from the isotopic composition of authigenic minerals
    • Chamberlain, C. P., and M. A. Poage. 2000. Reconstructing the paleotopography of mountain belts from the isotopic composition of authigenic minerals. Geology 28:115-118.
    • (2000) Geology , vol.28 , pp. 115-118
    • Chamberlain, C.P.1    Poage, M.A.2
  • 16
    • 0003109024 scopus 로고    scopus 로고
    • Sibling species of titmice in the Parus inornatus complex (Aves: Paridae)
    • Cicero, C. 1996. Sibling species of titmice in the Parus inornatus complex (Aves: Paridae). University of California Publication in Zoology 128:1-217.
    • (1996) University of California Publication in Zoology , vol.128 , pp. 1-217
    • Cicero, C.1
  • 17
    • 0023698548 scopus 로고
    • Patterns and processes of diversification: Speciation and historical congruence in some Neotropical birds
    • Cracraft, J., and R. Prum. 1988. Patterns and processes of diversification: speciation and historical congruence in some Neotropical birds. Evolution 42:603-620.
    • (1988) Evolution , vol.42 , pp. 603-620
    • Cracraft, J.1    Prum, R.2
  • 18
    • 0033824427 scopus 로고    scopus 로고
    • The comparative phylogeography of Neotropical mammals: Patterns of intraspecific mitochondrial DNA variation among bats contrasted to nonvolant small mammals
    • Ditchfield, A. D. 2000. The comparative phylogeography of Neotropical mammals: patterns of intraspecific mitochondrial DNA variation among bats contrasted to nonvolant small mammals. Molecular Ecology 9:1307-1318.
    • (2000) Molecular Ecology , vol.9 , pp. 1307-1318
    • Ditchfield, A.D.1
  • 19
    • 0030621340 scopus 로고    scopus 로고
    • Geographic distribution of endangered species in the United States
    • Dobson, A. P., J. P. Rodriguez, W. M. Roberts, and D. S. Wilcove. 1997. Geographic distribution of endangered species in the United States. Science 275:550-553.
    • (1997) Science , vol.275 , pp. 550-553
    • Dobson, A.P.1    Rodriguez, J.P.2    Roberts, W.M.3    Wilcove, D.S.4
  • 20
    • 0034903561 scopus 로고    scopus 로고
    • Synoptic tinkering: Integrating strategies for large-scale conservation
    • Dobson, A. P., J. P. Rodriguez, and W. M. Roberts. 2001. Synoptic tinkering: integrating strategies for large-scale conservation. Ecological Applications 11:1019-1026.
    • (2001) Ecological Applications , vol.11 , pp. 1019-1026
    • Dobson, A.P.1    Rodriguez, J.P.2    Roberts, W.M.3
  • 21
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • Edwards, S. V., and P. Beerli. 2000. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54:1839-1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 23
    • 0041640265 scopus 로고    scopus 로고
    • Finding largest subtrees and smallest supertrees
    • Gupta, A., and N. Nishimura. 1998. Finding largest subtrees and smallest supertrees. Algorithmica 21:183-210.
    • (1998) Algorithmica , vol.21 , pp. 183-210
    • Gupta, A.1    Nishimura, N.2
  • 24
    • 0036341421 scopus 로고    scopus 로고
    • The phylogeography of Amazonia revisited: New evidence from riodinid butterflies
    • Hall, J. P. W., and D. J. Harvey. 2002. The phylogeography of Amazonia revisited: new evidence from riodinid butterflies. Evolution 56:1489-1497.
    • (2002) Evolution , vol.56 , pp. 1489-1497
    • Hall, J.P.W.1    Harvey, D.J.2
  • 26
    • 0036657007 scopus 로고    scopus 로고
    • Falling apart and merging: Diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West
    • Jockusch, E. L., and D. B. Wake. 2002. Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West. Biological Journal of the Linnean Society 76:361-391.
    • (2002) Biological Journal of the Linnean Society , vol.76 , pp. 361-391
    • Jockusch, E.L.1    Wake, D.B.2
  • 28
    • 0032835707 scopus 로고    scopus 로고
    • Comparative phylogeography of a sibling pair of rainforest Drosophila species (Drosophila serrata and D. birchii)
    • Kelemen, L., and C. Moritz. 1999. Comparative phylogeography of a sibling pair of rainforest Drosophila species (Drosophila serrata and D. birchii). Evolution 53:1306-1311.
    • (1999) Evolution , vol.53 , pp. 1306-1311
    • Kelemen, L.1    Moritz, C.2
  • 29
    • 0036124701 scopus 로고    scopus 로고
    • Seabird supertrees: Combining partial estimates of procellariiform phylogeny
    • Kennedy, M., and R. D. M. Page. 2002. Seabird supertrees: combining partial estimates of procellariiform phylogeny. Auk 119:88-108.
    • (2002) Auk , vol.119 , pp. 88-108
    • Kennedy, M.1    Page, R.D.M.2
  • 30
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 32
    • 0031513152 scopus 로고    scopus 로고
    • The average consensus procedure: Combination of weighted trees containing identical or overlapping sets of taxa
    • Lapointe, F.-J., and G. Cucumel. 1997. The average consensus procedure: combination of weighted trees containing identical or overlapping sets of taxa. Systematic Biology 46:306-312.
    • (1997) Systematic Biology , vol.46 , pp. 306-312
    • Lapointe, F.-J.1    Cucumel, G.2
  • 33
    • 85016602538 scopus 로고    scopus 로고
    • How good can a consensus get? Assessing the reliability of consensus trees in phylogenetic studies
    • M. Janowitz, F.-J. Lapointe, F. R. McMorris, B. Mirkin, and F. S. Roberts, eds. Bioconsensus American Mathematical Society, Providence, RI
    • _. 2003. How good can a consensus get? assessing the reliability of consensus trees in phylogenetic studies. Pages 205-220 in M. Janowitz, F.-J. Lapointe, F. R. McMorris, B. Mirkin, and F. S. Roberts, eds. Bioconsensus. DIMACS Series in Mathematics and Theoretical Computer Science, American Mathematical Society, Providence, RI.
    • (2003) DIMACS Series in Mathematics and Theoretical Computer Science , pp. 205-220
  • 34
    • 1642446507 scopus 로고    scopus 로고
    • Matrix representations with parsimony or with distances: Two sides of the same coin?
    • Lapointe, F.-J., M. Wilkinson, and D. Bryant. 2003. Matrix representations with parsimony or with distances: two sides of the same coin? Systematic Biology 52:865-868.
    • (2003) Systematic Biology , vol.52 , pp. 865-868
    • Lapointe, F.-J.1    Wilkinson, M.2    Bryant, D.3
  • 35
    • 0035993740 scopus 로고    scopus 로고
    • The evolution of geographic parthenogenesis in Timema walking sticks
    • Law, J. H., and B. J. Crespi. 2002. The evolution of geographic parthenogenesis in Timema walking sticks. Molecular Ecology 11: 1471-1489.
    • (2002) Molecular Ecology , vol.11 , pp. 1471-1489
    • Law, J.H.1    Crespi, B.J.2
  • 36
    • 0001271050 scopus 로고
    • Modeling brain evolution from behavior
    • Legendre, P., F.-J. Lapointe, and P. Casgrain. 1994. Modeling brain evolution from behavior. Evolution 48:1487-1499.
    • (1994) Evolution , vol.48 , pp. 1487-1499
    • Legendre, P.1    Lapointe, F.-J.2    Casgrain, P.3
  • 38
    • 0035141693 scopus 로고    scopus 로고
    • Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus)
    • Maldonado, J. E., C. Vila, and R. K. Wayne. 2001. Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus). Molecular Ecology 10:127-147.
    • (2001) Molecular Ecology , vol.10 , pp. 127-147
    • Maldonado, J.E.1    Vila, C.2    Wayne, R.K.3
  • 39
    • 0035100276 scopus 로고    scopus 로고
    • Higher-level relationships and major lineages of Lessingia (Compositae: Astereae) based on nuclear rDNA internal and external transcribed spacer (ITS and ETS) sequences
    • Markos, S., and B. G. Baldwin. 2001. Higher-level relationships and major lineages of Lessingia (Compositae: Astereae) based on nuclear rDNA internal and external transcribed spacer (ITS and ETS) sequences. Systematic Botany 26:168-183.
    • (2001) Systematic Botany , vol.26 , pp. 168-183
    • Markos, S.1    Baldwin, B.G.2
  • 40
    • 0036007849 scopus 로고    scopus 로고
    • Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes
    • Matocq, M. D. 2002. Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes. Molecular Ecology 11:229-242.
    • (2002) Molecular Ecology , vol.11 , pp. 229-242
    • Matocq, M.D.1
  • 43
    • 12044253257 scopus 로고
    • Maps between trees and cladistic analysis of historical associations among genes, areas and organisms
    • Page, R. D. M. 1994. Maps between trees and cladistic analysis of historical associations among genes, areas and organisms. Systematic Zoology 43:58-77.
    • (1994) Systematic Zoology , vol.43 , pp. 58-77
    • Page, R.D.M.1
  • 44
    • 0031949028 scopus 로고    scopus 로고
    • Trees within trees: Phylogeny and historical associations
    • Page, R. D. M., and M. A. Charleston. 1998. Trees within trees: phylogeny and historical associations. Trends in Ecology & Evolution 13:356-359.
    • (1998) Trends in Ecology & Evolution , vol.13 , pp. 356-359
    • Page, R.D.M.1    Charleston, M.A.2
  • 45
    • 1542289808 scopus 로고    scopus 로고
    • Comparative phylogeography of Amphicarpaea legumes and their root-nodule symbionts in Japan and North America
    • Parker, M. A., J. L. Doyle, and J. J. Doyle. 2004. Comparative phylogeography of Amphicarpaea legumes and their root-nodule symbionts in Japan and North America. Journal of Biogeography 31: 425-434.
    • (2004) Journal of Biogeography , vol.31 , pp. 425-434
    • Parker, M.A.1    Doyle, J.L.2    Doyle, J.J.3
  • 47
    • 2942560610 scopus 로고    scopus 로고
    • The nightmare of the combination: Comments on matrix representation with parsimony and its first application in biogeography
    • Racheli, L. 2004. The nightmare of the combination: comments on matrix representation with parsimony and its first application in biogeography. Cladistics 20:208-211.
    • (2004) Cladistics , vol.20 , pp. 208-211
    • Racheli, L.1
  • 48
    • 0026822436 scopus 로고
    • Phylogenetic inference based on matrix representation of trees
    • Ragan, M. A. 1992. Phylogenetic inference based on matrix representation of trees. Molecular Phylogenetics and Evolution 1:53-58.
    • (1992) Molecular Phylogenetics and Evolution , vol.1 , pp. 53-58
    • Ragan, M.A.1
  • 50
    • 0033694173 scopus 로고    scopus 로고
    • Comparative phylogeography of Bailey's pocket mouse (Chaetodipus baileyi) and the Peromyscus eremicus species group: Historical vicariance of the Baja California peninsular desert
    • Riddle, B. R., D. J. Hafner, and L. F. Alexander. 2000. Comparative phylogeography of Bailey's pocket mouse (Chaetodipus baileyi) and the Peromyscus eremicus species group: historical vicariance of the Baja California peninsular desert. Molecular Phylogenetics and Evolution 17:161-172.
    • (2000) Molecular Phylogenetics and Evolution , vol.17 , pp. 161-172
    • Riddle, B.R.1    Hafner, D.J.2    Alexander, L.F.3
  • 51
    • 0033227441 scopus 로고    scopus 로고
    • Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae)
    • Rodriguez-Robles, J. A., D. F. Denardo, and R. E. Staub. 1999. Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae). Molecular Ecology 8:1923-1934.
    • (1999) Molecular Ecology , vol.8 , pp. 1923-1934
    • Rodriguez-Robles, J.A.1    Denardo, D.F.2    Staub, R.E.3
  • 52
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 56
    • 0034091330 scopus 로고    scopus 로고
    • Comparative phylogeography of mesoamerican highland rodents: Concerted versus independent response to past climatic fluctuations
    • Sullivan, J., E. Arellano, and D. S. Rogers. 2000. Comparative phylogeography of mesoamerican highland rodents: concerted versus independent response to past climatic fluctuations. American Naturalist 155:755-768
    • (2000) American Naturalist , vol.155 , pp. 755-768
    • Sullivan, J.1    Arellano, E.2    Rogers, D.S.3
  • 57
    • 0002529938 scopus 로고
    • When are phylogeny estimates from molecular and morphological data incongruent?
    • M. M. Miyamoto and J. Cracraft, eds. Oxford University Press, Oxford
    • Swofford, D. L. 1991. When are phylogeny estimates from molecular and morphological data incongruent? Pages 295-333 in M. M. Miyamoto and J. Cracraft, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, Oxford.
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 295-333
    • Swofford, D.L.1
  • 59
  • 60
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
    • Templeton, A. R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology 7:381-397.
    • (1998) Molecular Ecology , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 61
    • 0033916185 scopus 로고    scopus 로고
    • RadCon: Phylogenetic tree comparison and consensus
    • Thorley, J. L., and R. D. M. Page. 2000. RadCon: phylogenetic tree comparison and consensus. Bioinformatics 16:486-487.
    • (2000) Bioinformatics , vol.16 , pp. 486-487
    • Thorley, J.L.1    Page, R.D.M.2
  • 62
    • 0029659228 scopus 로고    scopus 로고
    • Life-history variation and comparative phylogeography of darters (Pisces: Percidae) from the North American Central Highlands
    • Turner, T. F., J. C. Trexler, D. N. Kuhn, and H. W. Robinson. 1996. Life-history variation and comparative phylogeography of darters (Pisces: Percidae) from the North American Central Highlands. Evolution 50:2023-2036.
    • (1996) Evolution , vol.50 , pp. 2023-2036
    • Turner, T.F.1    Trexler, J.C.2    Kuhn, D.N.3    Robinson, H.W.4
  • 63
    • 0037357443 scopus 로고    scopus 로고
    • Cladistic and phylogenetic biogeography: The art and the science of discovery
    • van Veller, M. G. P., D. R. Brooks, and M. Zandee. 2003. Cladistic and phylogenetic biogeography: the art and the science of discovery. Journal of Biogeography 30:319-329.
    • (2003) Journal of Biogeography , vol.30 , pp. 319-329
    • Van Veller, M.G.P.1    Brooks, D.R.2    Zandee, M.3
  • 64
    • 0037295130 scopus 로고    scopus 로고
    • Historical biogeography of Southeast Asia and the West Pacific, or the generality of unrooted are networks as historical hypotheses
    • Van Welzen, P. C., H. Turner, and P. Hovenkamp. 2003. Historical biogeography of Southeast Asia and the West Pacific, or the generality of unrooted are networks as historical hypotheses. Journal of Biogeography 30:181-192.
    • (2003) Journal of Biogeography , vol.30 , pp. 181-192
    • Van Welzen, P.C.1    Turner, H.2    Hovenkamp, P.3
  • 65
    • 0033936797 scopus 로고    scopus 로고
    • Comparative molecular phylogeography of North American softshell turtles (Apalone): Implications for regional and wide-scale historical evolutionary forces
    • Weisrock, D. W., and F. J. Janzen. 2000. Comparative molecular phylogeography of North American softshell turtles (Apalone): implications for regional and wide-scale historical evolutionary forces. Molecular Phylogenetics and Evolution 14:152-164.
    • (2000) Molecular Phylogenetics and Evolution , vol.14 , pp. 152-164
    • Weisrock, D.W.1    Janzen, F.J.2
  • 67
    • 0043198532 scopus 로고    scopus 로고
    • Historical isolation, range expansion, and secondary contact of two highly divergent mitochondrial lineages in spotted salamanders (Ambystoma maculatum)
    • Zamudio, K. R., and W. K. Savage. 2003. Historical isolation, range expansion, and secondary contact of two highly divergent mitochondrial lineages in spotted salamanders (Ambystoma maculatum). Evolution 57:1631-1652.
    • (2003) Evolution , vol.57 , pp. 1631-1652
    • Zamudio, K.R.1    Savage, W.K.2
  • 68
    • 0000793364 scopus 로고
    • The geography of mitochondrial-DNA variation in two sympatric sparrows
    • Zink, R. M. 1991. The geography of mitochondrial-DNA variation in two sympatric sparrows. Evolution 45:329-339.
    • (1991) Evolution , vol.45 , pp. 329-339
    • Zink, R.M.1
  • 69
    • 0029666957 scopus 로고    scopus 로고
    • Comparative phylogeography in North American birds
    • _. 1996. Comparative phylogeography in North American birds. Evolution 50:308-317.
    • (1996) Evolution , vol.50 , pp. 308-317
  • 70
    • 0036876576 scopus 로고    scopus 로고
    • Methods in comparative phylogeography, and their application to studying evolution in the North American aridlands
    • _. 2002. Methods in comparative phylogeography, and their application to studying evolution in the North American aridlands. Integrative Comparative Biology 42:953-959.
    • (2002) Integrative Comparative Biology , vol.42 , pp. 953-959
  • 72
    • 0035130483 scopus 로고    scopus 로고
    • Comparative phylogeography of some aridland bird species
    • Zink, R. M., A. E. Kessen, T. V. Line, and R. C. Blackwell-Rago. 2001. Comparative phylogeography of some aridland bird species. Condor 103:1-10.
    • (2001) Condor , vol.103 , pp. 1-10
    • Zink, R.M.1    Kessen, A.E.2    Line, T.V.3    Blackwell-Rago, R.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.