메뉴 건너뛰기




Volumn 5, Issue 7, 2010, Pages 671-685

Biofuel production improvement with genome-scale models: The role of cell composition

Author keywords

Biofuels; Biomass constituting equations; Genome scale model; Metabolic engineering; Systems biology

Indexed keywords

BIOMASS; COMPUTER SIMULATION; GENES; METABOLISM; MODELS;

EID: 77954715984     PISSN: 18606768     EISSN: 18607314     Source Type: Journal    
DOI: 10.1002/biot.201000007     Document Type: Review
Times cited : (29)

References (122)
  • 2
    • 33846950348 scopus 로고    scopus 로고
    • Challenges in engineering microbes for biofuels production
    • DOI 10.1126/science.1139612
    • Stephanopoulos, G., Challenges in engineering microbes for biofuels production. Science 2007, 315, 801-804. (Pubitemid 46255822)
    • (2007) Science , vol.315 , Issue.5813 , pp. 801-804
    • Stephanopoulos, G.1
  • 3
    • 57049098094 scopus 로고    scopus 로고
    • Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
    • Lee, S. K., Chou, H., Ham, T. S., Lee, T. S., Keasling, J. D., Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels. Curr. Opin. Biotechnol. 2008, 19, 556-563.
    • (2008) Curr. Opin. Biotechnol. , vol.19 , pp. 556-563
    • Lee, S.K.1    Chou, H.2    Ham, T.S.3    Lee, T.S.4    Keasling, J.D.5
  • 4
    • 45049086849 scopus 로고    scopus 로고
    • Biofuel alternatives to ethanol: Pumping the microbial well
    • Fortman, J. L., Chhabra, S., Mukhopadhyay, A., Chou, H. et al., Biofuel alternatives to ethanol: Pumping the microbial well. Trends Biotechnol. 2008, 26, 375-381.
    • (2008) Trends Biotechnol. , vol.26 , pp. 375-381
    • Fortman, J.L.1    Chhabra, S.2    Mukhopadhyay, A.3    Chou, H.4
  • 5
    • 53049086510 scopus 로고    scopus 로고
    • Engineering solventogenic clostridia
    • Papoutsakis, E. T., Engineering solventogenic clostridia. Curr. Opin. Biotechnol. 2008, 19, 420-429.
    • (2008) Curr. Opin. Biotechnol. , vol.19 , pp. 420-429
    • Papoutsakis, E.T.1
  • 6
    • 77955333835 scopus 로고    scopus 로고
    • A comparison of ethanol and butanol as oxygenates using a direct-injection, spark-ignition engine
    • Wallner, T., Miers, S. A., McConnell, S., A comparison of ethanol and butanol as oxygenates using a direct-injection, spark-ignition engine. J. Eng. Gas. Turb. Power 2009, 131, 032802.
    • (2009) J. Eng. Gas. Turb. Power , vol.131 , pp. 032802
    • Wallner, T.1    Miers, S.A.2    McConnell, S.3
  • 7
    • 38049001166 scopus 로고    scopus 로고
    • Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
    • Atsumi, S., Hanai, T., Liao, J. C., Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 2008, 451, 86-89.
    • (2008) Nature , vol.451 , pp. 86-89
    • Atsumi, S.1    Hanai, T.2    Liao, J.C.3
  • 8
    • 53049083876 scopus 로고    scopus 로고
    • Metabolic engineering for advanced biofuels production from Escherichia coli
    • Atsumi, S., Liao, J. C., Metabolic engineering for advanced biofuels production from Escherichia coli. Curr. Opin. Biotechnol. 2008, 19, 414-419.
    • (2008) Curr. Opin. Biotechnol. , vol.19 , pp. 414-419
    • Atsumi, S.1    Liao, J.C.2
  • 9
    • 53049097710 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for 1-butanol production
    • Atsumi, S., Cann, A. F., Connor, M. R., Shen, C. R. et al., Metabolic engineering of Escherichia coli for 1-butanol production. Metab. Eng. 2008, 10, 305-311.
    • (2008) Metab. Eng. , vol.10 , pp. 305-311
    • Atsumi, S.1    Cann, A.F.2    Connor, M.R.3    Shen, C.R.4
  • 10
    • 63049085861 scopus 로고    scopus 로고
    • Engineering metabolic systems for production of advanced fuels
    • Yan, Y., Liao, J. C., Engineering metabolic systems for production of advanced fuels. J. Ind. Microbiol. Biotechnol. 2009, 36, 471-479.
    • (2009) J. Ind. Microbiol. Biotechnol. , vol.36 , pp. 471-479
    • Yan, Y.1    Liao, J.C.2
  • 11
    • 38149049951 scopus 로고    scopus 로고
    • Models for synthetic biology
    • Kaznessis, Y. N., Models for synthetic biology. BMC Syst. Biol. 2007, 1, 47.
    • (2007) BMC Syst. Biol. , vol.1 , pp. 47
    • Kaznessis, Y.N.1
  • 12
    • 70749153218 scopus 로고    scopus 로고
    • Biocrude oils from the fast pyrolysis of poultry litter and hardwood
    • Agblevor, F. A., Beis, S., Kim, S. S., Tarrant, R., Mante, N. O., Biocrude oils from the fast pyrolysis of poultry litter and hardwood.Waste Manag. 2010, 30, 298-307.
    • (2010) Waste Manag. , vol.30 , pp. 298-307
    • Agblevor, F.A.1    Beis, S.2    Kim, S.S.3    Tarrant, R.4    Mante, N.O.5
  • 14
    • 74149089617 scopus 로고    scopus 로고
    • Development of an attached microalgal growth system for biofuel production
    • Johnson, M. B., Wen, Z., Development of an attached microalgal growth system for biofuel production. Appl. Microbiol. Biotechnol. 2010, 85, 525-534.
    • (2010) Appl. Microbiol. Biotechnol. , vol.85 , pp. 525-534
    • Johnson, M.B.1    Wen, Z.2
  • 15
    • 55849139751 scopus 로고    scopus 로고
    • High-yield hydrogen production from starch and water by a synthetic enzymatic pathway
    • Zhang, Y. H., Evans, B. R., Mielenz, J. R., Hopkins, R. C., Adams, M. W., High-yield hydrogen production from starch and water by a synthetic enzymatic pathway. PLoS One 2007, 2, e456.
    • (2007) PLoS One , vol.2
    • Zhang, Y.H.1    Evans, B.R.2    Mielenz, J.R.3    Hopkins, R.C.4    Adams, M.W.5
  • 16
    • 48649097223 scopus 로고    scopus 로고
    • Third generation biofuels via direct cellulose fermentation
    • Carere, C. R., Sparling, R., Cicek, N., Levin, D. B., Third generation biofuels via direct cellulose fermentation. Int. J. Mol. Sci. 2008, 9, 1342-1360.
    • (2008) Int. J. Mol. Sci. , vol.9 , pp. 1342-1360
    • Carere, C.R.1    Sparling, R.2    Cicek, N.3    Levin, D.B.4
  • 18
    • 67349270261 scopus 로고    scopus 로고
    • Alternative routes to biofuels: Light-driven biofuel formation from CO2 and water based on the 'photanol' approach
    • Hellingwerf, K. J., Teixeira de Mattos, M. J., Alternative routes to biofuels: Light-driven biofuel formation from CO2 and water based on the 'photanol' approach. J. Biotechnol. 2009, 142, 87-90.
    • (2009) J. Biotechnol. , vol.142 , pp. 87-90
    • Hellingwerf, K.J.1    Teixeira De Mattos, M.J.2
  • 19
    • 0025895183 scopus 로고
    • Toward a science of metabolic engineering
    • Bailey, J. E., Toward a science of metabolic engineering. Science 1991, 252, 1668-1675.
    • (1991) Science , vol.252 , pp. 1668-1675
    • Bailey, J.E.1
  • 20
    • 0025866296 scopus 로고
    • Network rigidity and metabolic engineering in metabolite overproduction
    • Stephanopoulos, G., Vallino, J. J., Network rigidity and metabolic engineering in metabolite overproduction. Science 1991, 252, 1675-1681. (Pubitemid 21917085)
    • (1991) Science , vol.252 , Issue.5013 , pp. 1675-1681
    • Stephanopoulos, G.1    Vallino, J.J.2
  • 21
    • 33744537000 scopus 로고    scopus 로고
    • Combinatorial biosynthesis-potential and problems
    • Floss, H. G., Combinatorial biosynthesis-potential and problems. J. Biotechnol. 2006, 124, 242-257.
    • (2006) J. Biotechnol. , vol.124 , pp. 242-257
    • Floss, H.G.1
  • 22
    • 0034986950 scopus 로고    scopus 로고
    • Microbial pathway engineering for industrial processes: Evolution, combinatorial biosynthesis and rational design
    • Rohlin, L., Oh, M. K., Liao, J. C., Microbial pathway engineering for industrial processes: Evolution, combinatorial biosynthesis and rational design. Curr. Opin. Microbiol. 2001, 4, 330-335.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 330-335
    • Rohlin, L.1    Oh, M.K.2    Liao, J.C.3
  • 23
    • 5044237367 scopus 로고    scopus 로고
    • Exploiting biological complexity for strain improvement through systems biology
    • Stephanopoulos, G., Alper, H., Moxley, J., Exploiting biological complexity for strain improvement through systems biology. Nat. Biotechnol. 2004, 22, 1261-1267.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1261-1267
    • Stephanopoulos, G.1    Alper, H.2    Moxley, J.3
  • 24
    • 22844452835 scopus 로고    scopus 로고
    • Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets
    • Alper, H., Miyaoku, K., Stephanopoulos, G., Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets. Nat. Biotechnol. 2005, 23, 612-616.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 612-616
    • Alper, H.1    Miyaoku, K.2    Stephanopoulos, G.3
  • 25
    • 25144510882 scopus 로고    scopus 로고
    • Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method
    • Kang, M. J., Lee, Y. M., Yoon, S. H., Kim, J. H. et al., Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Biotechnol. Bioeng. 2005, 91, 636-642.
    • (2005) Biotechnol. Bioeng. , vol.91 , pp. 636-642
    • Kang, M.J.1    Lee, Y.M.2    Yoon, S.H.3    Kim, J.H.4
  • 27
    • 33845948161 scopus 로고    scopus 로고
    • SCALEs: Multiscale analysis of library enrichment
    • Lynch, M. D., Warnecke, T., Gill, R. T., SCALEs: Multiscale analysis of library enrichment. Nat. Methods 2007, 4, 87-93.
    • (2007) Nat. Methods , vol.4 , pp. 87-93
    • Lynch, M.D.1    Warnecke, T.2    Gill, R.T.3
  • 28
    • 55549129643 scopus 로고    scopus 로고
    • A high-throughput screen for hyaluronic acid accumulation in recombinant Escherichia coli transformed by libraries of engineered sigma factors
    • Yu, H., Tyo, K., Alper, H., Klein-Marcuschamer, D., Stephanopoulos, G., A high-throughput screen for hyaluronic acid accumulation in recombinant Escherichia coli transformed by libraries of engineered sigma factors. Biotechnol. Bioeng. 2008, 101, 788-796.
    • (2008) Biotechnol. Bioeng. , vol.101 , pp. 788-796
    • Yu, H.1    Tyo, K.2    Alper, H.3    Klein-Marcuschamer, D.4    Stephanopoulos, G.5
  • 29
    • 0035125986 scopus 로고    scopus 로고
    • In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
    • Edwards, J. S., Ibarra, R. U., Palsson, B. O., In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol. 2001, 19, 125-130.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 125-130
    • Edwards, J.S.1    Ibarra, R.U.2    Palsson, B.O.3
  • 30
    • 34347332311 scopus 로고    scopus 로고
    • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    • Feist, A. M., Henry, C. S., Reed, J. L., Krummenacker, M. et al., A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol. 2007, 3, 121.
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 121
    • Feist, A.M.1    Henry, C.S.2    Reed, J.L.3    Krummenacker, M.4
  • 31
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • Reed, J. L., Vo, T. D., Schilling, C. H., Palsson, B. O., An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 2003, 4, R54.
    • (2003) Genome Biol. , vol.4
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.O.4
  • 32
    • 65649126379 scopus 로고    scopus 로고
    • Connecting extracellular metabolomic measurements to intracellular flux states in yeast
    • Mo, M. L., Palsson, B. O., Herrgard, M. J., Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Syst. Biol. 2009, 3, 37.
    • (2009) BMC Syst. Biol. , vol.3 , pp. 37
    • Mo, M.L.1    Palsson, B.O.2    Herrgard, M.J.3
  • 33
    • 52649105455 scopus 로고    scopus 로고
    • The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: A scaffold to query lipid metabolism
    • Nookaew, I., Jewett, M. C., Meechai, A., Thammarongtham, C. et al., The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: A scaffold to query lipid metabolism. BMC Syst. Biol. 2008, 2, 71.
    • (2008) BMC Syst. Biol. , vol.2 , pp. 71
    • Nookaew, I.1    Jewett, M.C.2    Meechai, A.3    Thammarongtham, C.4
  • 34
    • 67650573077 scopus 로고    scopus 로고
    • IBsu1103: A new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
    • Henry, C. S., Zinner, J. F., Cohoon, M. P., Stevens, R. L., iBsu1103: A new genome-scale metabolic model of Bacillus subtilis based on SEED annotations. Genome Biol. 2009, 10, R69.
    • (2009) Genome Biol. , vol.10
    • Henry, C.S.1    Zinner, J.F.2    Cohoon, M.P.3    Stevens, R.L.4
  • 35
    • 35348934254 scopus 로고    scopus 로고
    • Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data
    • Oh, Y. K., Palsson, B. O., Park, S. M., Schilling, C. H., Mahadevan, R., Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data. J. Biol. Chem. 2007, 282, 28791-28799.
    • (2007) J. Biol. Chem. , vol.282 , pp. 28791-28799
    • Oh, Y.K.1    Palsson, B.O.2    Park, S.M.3    Schilling, C.H.4    Mahadevan, R.5
  • 36
    • 51849115840 scopus 로고    scopus 로고
    • Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network
    • Lee, J., Yun, H., Feist, A. M., Palsson, B. O., Lee, S. Y., Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Appl. Microbiol. Biotechnol. 2008, 80, 849-862.
    • (2008) Appl. Microbiol. Biotechnol. , vol.80 , pp. 849-862
    • Lee, J.1    Yun, H.2    Feist, A.M.3    Palsson, B.O.4    Lee, S.Y.5
  • 37
    • 51849142353 scopus 로고    scopus 로고
    • Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis
    • Senger, R. S., Papoutsakis, E. T., Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis. Biotechnol. Bioeng. 2008, 101, 1036-1052.
    • (2008) Biotechnol. Bioeng. , vol.101 , pp. 1036-1052
    • Senger, R.S.1    Papoutsakis, E.T.2
  • 38
    • 51849157931 scopus 로고    scopus 로고
    • Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems
    • Senger, R. S., Papoutsakis, E. T., Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems. Biotechnol. Bioeng. 2008, 101, 1053-1071.
    • (2008) Biotechnol. Bioeng. , vol.101 , pp. 1053-1071
    • Senger, R.S.1    Papoutsakis, E.T.2
  • 39
    • 20444363124 scopus 로고    scopus 로고
    • From genomes to in silico cells via metabolic networks
    • Borodina, I., Nielsen, J., From genomes to in silico cells via metabolic networks. Curr. Opin. Biotechnol. 2005, 16, 350-355.
    • (2005) Curr. Opin. Biotechnol. , vol.16 , pp. 350-355
    • Borodina, I.1    Nielsen, J.2
  • 40
    • 45149111660 scopus 로고    scopus 로고
    • The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
    • Feist, A. M., Palsson, B. O., The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat. Biotechnol. 2008, 26, 659-667.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 659-667
    • Feist, A.M.1    Palsson, B.O.2
  • 41
    • 73849090293 scopus 로고    scopus 로고
    • Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
    • Milne, C. B., Kim, P. J., Eddy, J. A., Price, N. D., Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology. Biotechnol. J. 2009, 4, 1653-1670.
    • (2009) Biotechnol. J. , vol.4 , pp. 1653-1670
    • Milne, C.B.1    Kim, P.J.2    Eddy, J.A.3    Price, N.D.4
  • 44
    • 0001827017 scopus 로고    scopus 로고
    • Metabolic flux analysis
    • Lee, S. Y., Papoutsakis, E. T. (Eds.), Marcel Dekker, New York
    • Edwards, E. S., Ramakrishna, R., Schilling, C. H., Palsson, B. O., Metabolic flux analysis, in: Lee, S. Y., Papoutsakis, E. T. (Eds.), Metabolic Engineering, Marcel Dekker, New York 1999, pp. 13-57.
    • (1999) Metabolic Engineering , pp. 13-57
    • Edwards, E.S.1    Ramakrishna, R.2    Schilling, C.H.3    Palsson, B.O.4
  • 45
    • 0021383728 scopus 로고
    • Equations and calculations for fermentations of butyric-acid bacteria
    • Papoutsakis, E. T., Equations and calculations for fermentations of butyric-acid bacteria. Biotechnol. Bioeng. 1984, 26, 174-187.
    • (1984) Biotechnol. Bioeng. , vol.26 , pp. 174-187
    • Papoutsakis, E.T.1
  • 46
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • Varma, A., Palsson, B. O., Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 1994, 60, 3724-3731.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 47
    • 65649126411 scopus 로고    scopus 로고
    • Flux balance analysis: Interrogating genome-scale metabolic networks
    • Oberhardt, M. A., Chavali, A. K., Papin, J. A., Flux balance analysis: Interrogating genome-scale metabolic networks. Methods Mol. Biol. 2009, 500, 61-80.
    • (2009) Methods Mol. Biol. , vol.500 , pp. 61-80
    • Oberhardt, M.A.1    Chavali, A.K.2    Papin, J.A.3
  • 48
    • 70349770739 scopus 로고    scopus 로고
    • Constraints-based genome-scale metabolic simulation for systems metabolic engineering
    • Park, J. M., Kim, T. Y., Lee, S. Y., Constraints-based genome-scale metabolic simulation for systems metabolic engineering. Biotechnol. Adv. 2009, 27, 979-988.
    • (2009) Biotechnol. Adv. , vol.27 , pp. 979-988
    • Park, J.M.1    Kim, T.Y.2    Lee, S.Y.3
  • 49
    • 0037069467 scopus 로고    scopus 로고
    • Analysis of optimality in natural and perturbed metabolic networks
    • Segre, D., Vitkup, D., Church, G. M., Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 2002, 99, 15112-15117.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15112-15117
    • Segre, D.1    Vitkup, D.2    Church, G.M.3
  • 50
    • 33748448689 scopus 로고    scopus 로고
    • Using the topology of metabolic networks to predict viability of mutant strains
    • Wunderlich, Z., Mirny, L. A., Using the topology of metabolic networks to predict viability of mutant strains. Biophys. J. 2006, 91, 2304-2311.
    • (2006) Biophys. J. , vol.91 , pp. 2304-2311
    • Wunderlich, Z.1    Mirny, L.A.2
  • 51
    • 19644386033 scopus 로고    scopus 로고
    • Regulatory on/off minimization of metabolic flux changes after genetic perturbations
    • Shlomi, T., Berkman, O., Ruppin, E., Regulatory on/off minimization of metabolic flux changes after genetic perturbations. Proc. Natl. Acad. Sci. USA 2005, 102, 7695-7700.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 7695-7700
    • Shlomi, T.1    Berkman, O.2    Ruppin, E.3
  • 52
    • 25844495901 scopus 로고    scopus 로고
    • Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    • Fong, S. S., Joyce, A. R., Palsson, B. O., Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res. 2005, 15, 1365-1372.
    • (2005) Genome Res. , vol.15 , pp. 1365-1372
    • Fong, S.S.1    Joyce, A.R.2    Palsson, B.O.3
  • 53
    • 40449119329 scopus 로고    scopus 로고
    • Metabolic engineering delivers next-generation biofuels
    • Keasling, J. D., Chou, H., Metabolic engineering delivers next-generation biofuels. Nat. Biotechnol. 2008, 26, 298-299.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 298-299
    • Keasling, J.D.1    Chou, H.2
  • 54
    • 59049100649 scopus 로고    scopus 로고
    • Expanding the repertoire of biofuel alternatives through metabolic pathway evolution
    • Koffas, M. A., Expanding the repertoire of biofuel alternatives through metabolic pathway evolution. Proc. Natl. Acad. Sci. USA 2009, 106, 965-966.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 965-966
    • Koffas, M.A.1
  • 55
    • 33847307148 scopus 로고    scopus 로고
    • Bayesian-based selection of metabolic objective functions
    • DOI 10.1093/bioinformatics/btl619
    • Knorr, A. L., Jain, R., Srivastava, R., Bayesian-based selection of metabolic objective functions. Bioinformatics 2007, 23, 351-357. (Pubitemid 46323158)
    • (2007) Bioinformatics , vol.23 , Issue.3 , pp. 351-357
    • Knorr, A.L.1    Jain, R.2    Srivastava, R.3
  • 56
    • 33644829256 scopus 로고    scopus 로고
    • In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network
    • Heinemann, M., Kummel, A., Ruinatscha, R., Panke, S., In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network. Biotechnol. Bioeng. 2005, 92, 850-864.
    • (2005) Biotechnol. Bioeng. , vol.92 , pp. 850-864
    • Heinemann, M.1    Kummel, A.2    Ruinatscha, R.3    Panke, S.4
  • 57
    • 12444259324 scopus 로고    scopus 로고
    • The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
    • Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N. et al., The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J. Biotechnol. 2003, 104, 5-25.
    • (2003) J. Biotechnol. , vol.104 , pp. 5-25
    • Kalinowski, J.1    Bathe, B.2    Bartels, D.3    Bischoff, N.4
  • 58
    • 58249089508 scopus 로고    scopus 로고
    • In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network
    • Kjeldsen, K. R., Nielsen, J., In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network. Biotechnol. Bioeng. 2009, 102, 583-597.
    • (2009) Biotechnol. Bioeng. , vol.102 , pp. 583-597
    • Kjeldsen, K.R.1    Nielsen, J.2
  • 59
    • 0030029350 scopus 로고    scopus 로고
    • Growth rate-dependent modulation of carbon flux through central metabolism and the kinetic consequences for glucose-limited chemostat cultures of Corynebacterium glutamicum
    • Cocaign-Bousquet, M., Guyonvarch, A., Lindley, N. D., Growth rate-dependent modulation of carbon flux through central metabolism and the kinetic consequences for glucose-limited chemostat cultures of Corynebacterium glutamicum. Appl. Environ. Microbiol. 1996, 62, 429-436.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 429-436
    • Cocaign-Bousquet, M.1    Guyonvarch, A.2    Lindley, N.D.3
  • 60
    • 0001441208 scopus 로고
    • Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum
    • Baer, S. H., Blaschek, H. P., Smith, T. L., Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum. Appl. Environ. Microbiol. 1987, 53, 2854-2861.
    • (1987) Appl. Environ. Microbiol. , vol.53 , pp. 2854-2861
    • Baer, S.H.1    Blaschek, H.P.2    Smith, T.L.3
  • 61
    • 0026509727 scopus 로고
    • Replacement of the aliphatic chains of Clostridium acetobutylicum by exogenous fatty acids: Regulation of phospholipid and glycolipid composition
    • Johnston, N. C., Goldfine, H., Replacement of the aliphatic chains of Clostridium acetobutylicum by exogenous fatty acids: Regulation of phospholipid and glycolipid composition. J. Bacteriol. 1992, 174, 1848-1853.
    • (1992) J. Bacteriol. , vol.174 , pp. 1848-1853
    • Johnston, N.C.1    Goldfine, H.2
  • 62
    • 0023088579 scopus 로고
    • Changes in membrane lipid composition of Clostridium acetobutylicum during acetone butanol fermentation: Effects of solvents, growth temperature and pH
    • Lepage, C., Fayolle, F., Hermann, M., Vandecasteele, J. P., Changes in membrane lipid composition of Clostridium acetobutylicum during acetone butanol fermentation: Effects of solvents, growth temperature and pH. J. Gen. Microbiol. 1987, 133, 103-110.
    • (1987) J. Gen. Microbiol. , vol.133 , pp. 103-110
    • Lepage, C.1    Fayolle, F.2    Hermann, M.3    Vandecasteele, J.P.4
  • 63
    • 0025790333 scopus 로고
    • Effects of solvents and alcohols on the polar lipid composition of Clostridium butyricum under conditions of controlled lipid chain composition
    • MacDonald, D. L., Goldfine, H., Effects of solvents and alcohols on the polar lipid composition of Clostridium butyricum under conditions of controlled lipid chain composition. Appl. Environ. Microbiol. 1991, 57, 3517-3521.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 3517-3521
    • MacDonald, D.L.1    Goldfine, H.2
  • 64
    • 0021353391 scopus 로고
    • Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824
    • Vollherbst-Schneck, K., Sands, J. A., Montenecourt, B. S., Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824. Appl. Environ. Microbiol. 1984, 47, 193-194.
    • (1984) Appl. Environ. Microbiol. , vol.47 , pp. 193-194
    • Vollherbst-Schneck, K.1    Sands, J.A.2    Montenecourt, B.S.3
  • 65
    • 0347479228 scopus 로고    scopus 로고
    • A continuum of anionic charge: Structures and functions of D-alanyl-teichoic acids in gram-positive bacteria
    • Neuhaus, F. C., Baddiley, J., A continuum of anionic charge: Structures and functions of D-alanyl-teichoic acids in gram-positive bacteria. Microbiol. Mol. Biol. Rev. 2003, 67, 686-723.
    • (2003) Microbiol. Mol. Biol. Rev. , vol.67 , pp. 686-723
    • Neuhaus, F.C.1    Baddiley, J.2
  • 66
    • 0028982844 scopus 로고
    • Incorporation of D-alanine into lipoteichoic acid and wall teichoic acid in Bacillus subtilis. Identification of genes and regulation
    • Perego, M., Glaser, P., Minutello, A., Strauch, M. A. et al., Incorporation of D-alanine into lipoteichoic acid and wall teichoic acid in Bacillus subtilis. Identification of genes and regulation. J. Biol. Chem. 1995, 270, 15598-15606.
    • (1995) J. Biol. Chem. , vol.270 , pp. 15598-15606
    • Perego, M.1    Glaser, P.2    Minutello, A.3    Strauch, M.A.4
  • 67
    • 17844405878 scopus 로고    scopus 로고
    • Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation
    • Becker, S. A., Palsson, B. O., Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation. BMC Microbiol. 2005, 5, 8.
    • (2005) BMC Microbiol. , vol.5 , pp. 8
    • Becker, S.A.1    Palsson, B.O.2
  • 68
    • 32844455250 scopus 로고    scopus 로고
    • A bottom-up approach to gene regulation
    • Guido, N. J., Wang, X., Adalsteinsson, D., McMillen, D. et al., A bottom-up approach to gene regulation. Nature 2006, 439, 856-860.
    • (2006) Nature , vol.439 , pp. 856-860
    • Guido, N.J.1    Wang, X.2    Adalsteinsson, D.3    McMillen, D.4
  • 69
    • 1242328740 scopus 로고    scopus 로고
    • Reconstruction of microbial transcriptional regulatory networks
    • Herrgard, M. J., Covert, M. W., Palsson, B. O., Reconstruction of microbial transcriptional regulatory networks. Curr. Opin. Biotechnol. 2004, 15, 70-77.
    • (2004) Curr. Opin. Biotechnol. , vol.15 , pp. 70-77
    • Herrgard, M.J.1    Covert, M.W.2    Palsson, B.O.3
  • 70
    • 0037385718 scopus 로고    scopus 로고
    • Genome-scale microbial in silico models:The constraintsbased approach
    • Price, N. D., Papin, J. A., Schilling, C. H., Palsson, B. O., Genome-scale microbial in silico models:The constraintsbased approach. Trends Biotechnol. 2003, 21, 162-169.
    • (2003) Trends Biotechnol. , vol.21 , pp. 162-169
    • Price, N.D.1    Papin, J.A.2    Schilling, C.H.3    Palsson, B.O.4
  • 71
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: Evaluating the consequences of constraints
    • Price, N. D., Reed, J. L., Palsson, B. O., Genome-scale models of microbial cells: Evaluating the consequences of constraints. Nat. Rev. Microbiol. 2004, 2, 886-897.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 886-897
    • Price, N.D.1    Reed, J.L.2    Palsson, B.O.3
  • 72
    • 0343035686 scopus 로고    scopus 로고
    • Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
    • Pramanik, J., Keasling, J. D., Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 1997, 56, 398-421.
    • (1997) Biotechnol. Bioeng. , vol.56 , pp. 398-421
    • Pramanik, J.1    Keasling, J.D.2
  • 73
    • 0032552815 scopus 로고    scopus 로고
    • Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
    • Pramanik, J., Keasling, J. D., Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. Biotechnol. Bioeng. 1998, 60, 230-238.
    • (1998) Biotechnol. Bioeng. , vol.60 , pp. 230-238
    • Pramanik, J.1    Keasling, J.D.2
  • 74
    • 0036708443 scopus 로고    scopus 로고
    • Dynamic flux balance analysis of diauxic growth in Escherichia coli
    • Mahadevan, R., Edwards, J. S., Doyle, F. J., 3rd, Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J. 2002, 83, 1331-1340.
    • (2002) Biophys. J. , vol.83 , pp. 1331-1340
    • Mahadevan, R.1    Edwards, J.S.2    Doyle III, F.J.3
  • 75
    • 76749149000 scopus 로고    scopus 로고
    • Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
    • Meadows, A. L., Karnik, R., Lam, H., Forestell, S., Snedecor, B., Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation. Metab. Eng. 2010, 12, 150-160.
    • (2010) Metab. Eng. , vol.12 , pp. 150-160
    • Meadows, A.L.1    Karnik, R.2    Lam, H.3    Forestell, S.4    Snedecor, B.5
  • 76
    • 0017330253 scopus 로고
    • Establishment of exponential growth after a nutritional shift up in Escherichia coli B/r: Accumulation of deoxyribonucleic acid, ribonucleic acid, and protein
    • Brunschede, H., Dove, T. L., Bremer, H., Establishment of exponential growth after a nutritional shift-up in Escherichia coli B/r: Accumulation of deoxyribonucleic acid, ribonucleic acid, and protein. J. Bacteriol. 1977, 129, 1020-1033. (Pubitemid 8043923)
    • (1977) Journal of Bacteriology , vol.129 , Issue.2 , pp. 1020-1033
    • Brunschede, H.1    Dove, T.L.2    Bremer, H.3
  • 79
    • 0014286661 scopus 로고
    • The biogenesis of mitochondria. 3. The lipid composition of aerobically and anaerobically grown Saccharomyces cerevisiae as related to the membrane systems of the cells
    • Jollow, D., Kellerman, G. M., Linnane, A. W., The biogenesis of mitochondria. 3. The lipid composition of aerobically and anaerobically grown Saccharomyces cerevisiae as related to the membrane systems of the cells. J. Cell Biol. 1968, 37, 221-230.
    • (1968) J. Cell Biol. , vol.37 , pp. 221-230
    • Jollow, D.1    Kellerman, G.M.2    Linnane, A.W.3
  • 81
    • 26444483354 scopus 로고    scopus 로고
    • Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum
    • Alsaker, K. V., Papoutsakis, E. T., Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J. Bacteriol. 2005, 187, 7103-7118.
    • (2005) J. Bacteriol. , vol.187 , pp. 7103-7118
    • Alsaker, K.V.1    Papoutsakis, E.T.2
  • 82
    • 49049116154 scopus 로고    scopus 로고
    • The transcriptional program underlying the physiology of clostridial sporulation
    • Jones, S. W., Paredes, C. J., Tracy, B., Cheng, N. et al., The transcriptional program underlying the physiology of clostridial sporulation. Genome Biol. 2008, 9, R114.
    • (2008) Genome Biol. , vol.9
    • Jones, S.W.1    Paredes, C.J.2    Tracy, B.3    Cheng, N.4
  • 83
    • 30544443489 scopus 로고    scopus 로고
    • A comparative genomic view of clostridial sporulation and physiology
    • Paredes, C. J., Alsaker, K. V., Papoutsakis, E. T., A comparative genomic view of clostridial sporulation and physiology. Nat. Rev. Microbiol. 2005, 3, 969-978.
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 969-978
    • Paredes, C.J.1    Alsaker, K.V.2    Papoutsakis, E.T.3
  • 84
    • 0029048826 scopus 로고
    • Mechanisms of membrane toxicity of hydrocarbons
    • Sikkema, J., de Bont, J. A., Poolman, B., Mechanisms of membrane toxicity of hydrocarbons. Microbiol. Rev. 1995, 59, 201-222.
    • (1995) Microbiol. Rev. , vol.59 , pp. 201-222
    • Sikkema, J.1    De Bont, J.A.2    Poolman, B.3
  • 85
    • 0036405482 scopus 로고    scopus 로고
    • Mechanisms of solvent tolerance in gram-negative bacteria
    • Ramos, J. L., Duque, E., Gallegos, M. T., Godoy, P. et al., Mechanisms of solvent tolerance in gram-negative bacteria. Annu. Rev. Microbiol. 2002, 56, 743-768.
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 743-768
    • Ramos, J.L.1    Duque, E.2    Gallegos, M.T.3    Godoy, P.4
  • 86
    • 0017660350 scopus 로고
    • Preferential inhibition of phosphatidyl ethanolamine synthesis in E. coli by alcohols
    • Ingram, L. O., Preferential inhibition of phosphatidyl ethanolamine synthesis in E. coli by alcohols. Can. J. Microbiol. 1977, 23, 779-789.
    • (1977) Can. J. Microbiol. , vol.23 , pp. 779-789
    • Ingram, L.O.1
  • 87
    • 0017623335 scopus 로고
    • 13 C NMR measurements of unsonicated phosphatidylcholine bilayers of different fatty acid and sterol composition
    • Lancee-Hermkens, A. W., de Kruijff, B., 13 C NMR measurements of unsonicated phosphatidylcholine bilayers of different fatty acid and sterol composition. Biochim. Biophys. Acta 1977, 470, 141-151.
    • (1977) Biochim. Biophys. Acta , vol.470 , pp. 141-151
    • Lancee-Hermkens, A.W.1    De Kruijff, B.2
  • 88
    • 0017250532 scopus 로고
    • Adaptation of membrane lipids to alcohols
    • Ingram, L. O., Adaptation of membrane lipids to alcohols. J. Bacteriol. 1976, 125, 670-678.
    • (1976) J. Bacteriol. , vol.125 , pp. 670-678
    • Ingram, L.O.1
  • 89
    • 0018792976 scopus 로고
    • Determination of lipid order parameters and rotational correlation times from fluorescence depolarization experiments
    • Heyn, M. P., Determination of lipid order parameters and rotational correlation times from fluorescence depolarization experiments. FEBS Lett. 1979, 108, 359-364.
    • (1979) FEBS Lett. , vol.108 , pp. 359-364
    • Heyn, M.P.1
  • 90
    • 0021360943 scopus 로고
    • Effects of ethanol on the Escherichia coli plasma membrane
    • Dombek, K. M., Ingram, L. O., Effects of ethanol on the Escherichia coli plasma membrane. J. Bacteriol. 1984, 157, 233-239. (Pubitemid 14222481)
    • (1984) Journal of Bacteriology , vol.157 , Issue.1 , pp. 233-239
    • Dombek, K.M.1    Ingram, L.O.2
  • 91
    • 0019926940 scopus 로고
    • Production and tolerance of ethanol in relation to phospholipid fatty-acyl composition in Saccharomyces cerevisiae NCYC 431
    • Beaven, M. J., Charpentier, C., Rose, A. H., Production and tolerance of ethanol in relation to phospholipid fatty-acyl composition in Saccharomyces cerevisiae NCYC 431. J. Gen. Microbiol. 1982, 128, 1447-1455.
    • (1982) J. Gen. Microbiol. , vol.128 , pp. 1447-1455
    • Beaven, M.J.1    Charpentier, C.2    Rose, A.H.3
  • 92
    • 0037337660 scopus 로고    scopus 로고
    • Ethanol tolerance in the yeast Saccharomyces cerevisiae is dependent on cellular oleic acid content
    • You, K. M., Rosenfield, C. L., Knipple, D. C., Ethanol tolerance in the yeast Saccharomyces cerevisiae is dependent on cellular oleic acid content. Appl. Environ. Microbiol. 2003, 69, 1499-1503.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1499-1503
    • You, K.M.1    Rosenfield, C.L.2    Knipple, D.C.3
  • 93
    • 0025063664 scopus 로고
    • Saccharomyces cerevisiae membrane sterol modifications in response to growth in the presence of ethanol
    • Walker-Caprioglio, H. M., Casey, W. M., Parks, L. W., Saccharomyces cerevisiae membrane sterol modifications in response to growth in the presence of ethanol. Appl. Environ. Microbiol. 1990, 56, 2853-2857.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 2853-2857
    • Walker-Caprioglio, H.M.1    Casey, W.M.2    Parks, L.W.3
  • 95
    • 0020568108 scopus 로고
    • Lipid composition in the classification of the butyric acid-producing clostridia
    • Johnston, N. C., Goldfine, H., Lipid composition in the classification of the butyric acid-producing clostridia. J. Gen. Microbiol. 1983, 129, 1075-1081.
    • (1983) J. Gen. Microbiol. , vol.129 , pp. 1075-1081
    • Johnston, N.C.1    Goldfine, H.2
  • 96
    • 0347469684 scopus 로고    scopus 로고
    • Variations of the envelope composition of Bacillus subtilis during growth in hyperosmotic medium
    • Lopez, C. S., Heras, H., Ruzal, S. M., Sanchez-Rivas, C., Rivas, E. A., Variations of the envelope composition of Bacillus subtilis during growth in hyperosmotic medium. Curr. Microbiol. 1998, 36, 55-61.
    • (1998) Curr. Microbiol. , vol.36 , pp. 55-61
    • Lopez, C.S.1    Heras, H.2    Ruzal, S.M.3    Sanchez-Rivas, C.4    Rivas, E.A.5
  • 97
  • 98
    • 34247612307 scopus 로고    scopus 로고
    • Multiple high-throughput analyses monitor the response of E. coli to perturbations
    • Ishii, N., Nakahigashi, K., Baba, T., Robert, M. et al., Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 2007, 316, 593-597.
    • (2007) Science , vol.316 , pp. 593-597
    • Ishii, N.1    Nakahigashi, K.2    Baba, T.3    Robert, M.4
  • 99
    • 21244495253 scopus 로고    scopus 로고
    • The development of the DIGE system: 2D fluorescence difference gel analysis technology
    • Marouga, R., David, S., Hawkins, E., The development of the DIGE system: 2D fluorescence difference gel analysis technology. Anal. Bioanal. Chem. 2005, 382, 669-678.
    • (2005) Anal. Bioanal. Chem. , vol.382 , pp. 669-678
    • Marouga, R.1    David, S.2    Hawkins, E.3
  • 100
    • 0242569355 scopus 로고    scopus 로고
    • Quantitative metabolome analysis using capillary electrophoresis mass spectrometry
    • Soga, T., Ohashi, Y., Ueno, Y., Naraoka, H. et al., Quantitative metabolome analysis using capillary electrophoresis mass spectrometry. J. Proteome Res. 2003, 2, 488-494.
    • (2003) J. Proteome Res. , vol.2 , pp. 488-494
    • Soga, T.1    Ohashi, Y.2    Ueno, Y.3    Naraoka, H.4
  • 101
    • 33745209659 scopus 로고    scopus 로고
    • Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption
    • Soga, T., Baran, R., Suematsu, M., Ueno, Y. et al., Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption. J. Biol. Chem. 2006, 281, 16768-16776.
    • (2006) J. Biol. Chem. , vol.281 , pp. 16768-16776
    • Soga, T.1    Baran, R.2    Suematsu, M.3    Ueno, Y.4
  • 102
    • 60549109072 scopus 로고    scopus 로고
    • Lipidomics joins the omics evolution
    • Dennis, E. A., Lipidomics joins the omics evolution. Proc. Natl. Acad. Sci. USA 2009, 106, 2089-2090.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2089-2090
    • Dennis, E.A.1
  • 103
    • 74949109848 scopus 로고    scopus 로고
    • Membrane lipidomics and the geometry of unsaturated fatty acids from biomimetic models to biological consequences
    • Ferreri, C., Chatgilialoglu, C., Membrane lipidomics and the geometry of unsaturated fatty acids from biomimetic models to biological consequences. Methods Mol. Biol. 2009, 579, 391-411.
    • (2009) Methods Mol. Biol. , vol.579 , pp. 391-411
    • Ferreri, C.1    Chatgilialoglu, C.2
  • 105
    • 70649093097 scopus 로고    scopus 로고
    • Lipidomics: A mass spectrometry based systems level analysis of cellular lipids
    • Ivanova, P. T., Milne, S. B., Myers, D. S., Brown, H. A., Lipidomics: A mass spectrometry based systems level analysis of cellular lipids. Curr. Opin. Chem. Biol. 2009, 13, 526-531.
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , pp. 526-531
    • Ivanova, P.T.1    Milne, S.B.2    Myers, D.S.3    Brown, H.A.4
  • 106
    • 22144478635 scopus 로고    scopus 로고
    • The emerging field of lipidomics
    • Wenk, M. R., The emerging field of lipidomics. Nat. Rev. Drug Discov. 2005, 4, 594-610.
    • (2005) Nat. Rev. Drug Discov. , vol.4 , pp. 594-610
    • Wenk, M.R.1
  • 107
    • 74949106308 scopus 로고    scopus 로고
    • Qualitative and quantitative analyses of phospholipids by LC-MS for lipidomics
    • Nakanishi, H., Ogiso, H., Taguchi, R., Qualitative and quantitative analyses of phospholipids by LC-MS for lipidomics. Methods Mol. Biol. 2009, 579, 287-313.
    • (2009) Methods Mol. Biol. , vol.579 , pp. 287-313
    • Nakanishi, H.1    Ogiso, H.2    Taguchi, R.3
  • 108
    • 39749138104 scopus 로고    scopus 로고
    • Development of a reversephase liquid chromatography electrospray ionization mass spectrometry method for lipidomics, improving detection of phosphatidic acid and phosphatidylserine
    • Ogiso, H., Suzuki, T., Taguchi, R., Development of a reversephase liquid chromatography electrospray ionization mass spectrometry method for lipidomics, improving detection of phosphatidic acid and phosphatidylserine. Anal. Biochem. 2008, 375, 124-131.
    • (2008) Anal. Biochem. , vol.375 , pp. 124-131
    • Ogiso, H.1    Suzuki, T.2    Taguchi, R.3
  • 109
    • 77649202818 scopus 로고    scopus 로고
    • Taking aim at cell lipids: Shotgun lipidomics and imaging mass spectrometry push the boundaries
    • Proschogo, N., Gaus, K., Jessup, W., Taking aim at cell lipids: Shotgun lipidomics and imaging mass spectrometry push the boundaries. Curr. Opin. Lipidol. 2009, 20, 522-523.
    • (2009) Curr. Opin. Lipidol. , vol.20 , pp. 522-523
    • Proschogo, N.1    Gaus, K.2    Jessup, W.3
  • 110
    • 60549111243 scopus 로고    scopus 로고
    • Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry
    • Ejsing, C. S., Sampaio, J. L., Surendranath, V., Duchoslav, E. et al., Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc. Natl. Acad. Sci. USA 2009, 106, 2136-2141.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2136-2141
    • Ejsing, C.S.1    Sampaio, J.L.2    Surendranath, V.3    Duchoslav, E.4
  • 111
    • 0026028597 scopus 로고
    • Classification and identification of bacteria by Fouriertransform infrared spectroscopy
    • Helm, D., Labischinski, H., Schallehn, G., Naumann, D., Classification and identification of bacteria by Fouriertransform infrared spectroscopy. J. Gen. Microbiol. 1991, 137, 69-79.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 69-79
    • Helm, D.1    Labischinski, H.2    Schallehn, G.3    Naumann, D.4
  • 112
    • 0033795976 scopus 로고    scopus 로고
    • FT-IR microspectroscopy for microbiological studies
    • Orsini, F., Ami, D., Villa, A. M., Sala, G. et al., FT-IR microspectroscopy for microbiological studies. J. Microbiol. Methods 2000, 42, 17-27.
    • (2000) J. Microbiol. Methods , vol.42 , pp. 17-27
    • Orsini, F.1    Ami, D.2    Villa, A.M.3    Sala, G.4
  • 113
    • 33644855822 scopus 로고    scopus 로고
    • Fourier transform infrared and raman spectroscopy for characterization of Listeria monocytogenes strains
    • Oust, A., Moretro, T., Naterstad, K., Sockalingum, G. D. et al., Fourier transform infrared and raman spectroscopy for characterization of Listeria monocytogenes strains. Appl. Environ. Microbiol. 2006, 72, 228-232.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 228-232
    • Oust, A.1    Moretro, T.2    Naterstad, K.3    Sockalingum, G.D.4
  • 114
    • 33646339147 scopus 로고    scopus 로고
    • Analysis of covariance patterns in gene expression data and FT-IR spectra
    • Oust, A., Moen, B., Martens, H., Rudi, K. et al., Analysis of covariance patterns in gene expression data and FT-IR spectra. J. Microbiol. Methods 2006, 65, 573-584.
    • (2006) J. Microbiol. Methods , vol.65 , pp. 573-584
    • Oust, A.1    Moen, B.2    Martens, H.3    Rudi, K.4
  • 115
    • 67749117998 scopus 로고    scopus 로고
    • Global responses of Escherichia coli to adverse conditions determined by microarrays and FT-IR spectroscopy
    • Moen, B., Janbu, A. O., Langsrud, S., Langsrud, O. et al., Global responses of Escherichia coli to adverse conditions determined by microarrays and FT-IR spectroscopy. Can. J. Microbiol. 2009, 55, 714-728.
    • (2009) Can. J. Microbiol. , vol.55 , pp. 714-728
    • Moen, B.1    Janbu, A.O.2    Langsrud, S.3    Langsrud, O.4
  • 116
    • 69149092533 scopus 로고    scopus 로고
    • Realtime molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response
    • Holman, H. Y., Wozei, E., Lin, Z., Comolli, L. R. et al., Realtime molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response. Proc. Natl. Acad. Sci. USA 2009, 106, 12599-12604.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 12599-12604
    • Holman, H.Y.1    Wozei, E.2    Lin, Z.3    Comolli, L.R.4
  • 117
    • 71149093103 scopus 로고    scopus 로고
    • Membrane phase behavior of Escherichia coli during desiccation, rehydration, and growth recovery
    • Scherber, C. M., Schottel, J. L., Aksan, A., Membrane phase behavior of Escherichia coli during desiccation, rehydration, and growth recovery. Biochim. Biophys. Acta 2009, 1788, 2427-2435.
    • (2009) Biochim. Biophys. Acta , vol.1788 , pp. 2427-2435
    • Scherber, C.M.1    Schottel, J.L.2    Aksan, A.3
  • 118
    • 65549101468 scopus 로고    scopus 로고
    • A high speed detection platform based on surface-enhanced Raman scattering for monitoring antibiotic-induced chemical changes in bacteria cell wall
    • Liu, T. T., Lin, Y. H., Hung, C. S., Liu, T. J. et al., A high speed detection platform based on surface-enhanced Raman scattering for monitoring antibiotic-induced chemical changes in bacteria cell wall. PLoS One 2009, 4, e5470.
    • (2009) PLoS One , vol.4
    • Liu, T.T.1    Lin, Y.H.2    Hung, C.S.3    Liu, T.J.4
  • 119
    • 43049083374 scopus 로고    scopus 로고
    • Characterisation and identification of bacteria using SERS
    • Jarvis, R. M., Goodacre, R., Characterisation and identification of bacteria using SERS. Chem. Soc. Rev. 2008, 37, 931-936.
    • (2008) Chem. Soc. Rev. , vol.37 , pp. 931-936
    • Jarvis, R.M.1    Goodacre, R.2
  • 120
    • 0033805289 scopus 로고    scopus 로고
    • Single-cell analysis of bacteria by Raman microscopy: Spectral information on the chemical composition of cells and on the heterogeneity in a culture
    • Schuster, K. C., Urlaub, E., Gapes, J. R., Single-cell analysis of bacteria by Raman microscopy: Spectral information on the chemical composition of cells and on the heterogeneity in a culture. J. Microbiol. Methods 2000, 42, 29-38.
    • (2000) J. Microbiol. Methods , vol.42 , pp. 29-38
    • Schuster, K.C.1    Urlaub, E.2    Gapes, J.R.3
  • 121
    • 33748714313 scopus 로고    scopus 로고
    • Automated bacterial genome analysis and annotation
    • Stothard, P., Wishart, D. S., Automated bacterial genome analysis and annotation. Curr. Opin. Microbiol. 2006, 9, 505-510.
    • (2006) Curr. Opin. Microbiol. , vol.9 , pp. 505-510
    • Stothard, P.1    Wishart, D.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.