Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue 31, 2009, Pages 12599-12604

  Holman, Hoi Ying N ^a   Wozei, Eleanor ^a,c   Lin, Zhang ^a,d   Comolli, Luis R ^a   Ball, David A ^a   Borglin, Sharon ^a   Fields, Matthew W ^a,b   Hazen, Terry C ^a   Downing, Kenneth H ^a  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b MONTANA STATE UNIVERSITY   (United States)

^c MAKERERE UNIVERSITY   (Uganda)

^d FUJIAN INSTITUTE OF RESEARCH ON THE STRUCTURE OF MATTER   (China)

Author keywords

Cellular water; Desulfovibrio; Hydrogen bond; Oxygen stress; Synchrotron ftir spectromicroscopy

Indexed keywords

OXYGEN; RADICAL; WATER;

ADAPTATION; ANAEROBE; ARTICLE; CELL STRUCTURE; CELL SURVIVAL; CELLULAR STRESS RESPONSE; CHEMICAL ENVIRONMENT; CONTROLLED STUDY; CYTOCHEMISTRY; DESULFOVIBRIO VULGARIS; HYDROGEN BOND; INFRARED SPECTROSCOPY; MOLECULAR BIOLOGY; MONITORING; NONHUMAN; PRIORITY JOURNAL; CHEMISTRY; PHYSIOLOGICAL STRESS; PHYSIOLOGY;

DESULFOVIBRIO;

ADAPTATION, PHYSIOLOGICAL; DESULFOVIBRIO VULGARIS; HYDROGEN BONDING; OXYGEN; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STRESS, PHYSIOLOGICAL; WATER;

EID: 69149092533     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0902070106     Document Type: Article

References (51)

1. Fay P (1992) Oxygen relations of nitrogen-fixation in Cyanobacteria. Microbiol Rev 56:340-373.
2. Bradshaw DJ, Marsh PD, Watson GK, Allison C (1998) Role of Fusobacterium nucleatum and coaggregation in anaerobe survival in planktonic and biofilm oral microbial communities during aeration. Infect Immun 66:4729-4732.
3. Cypionka H (2000) Oxygen respiration by Desulfovibrio species. Annu Rev Microbiol 54:827-848.
4. Baughn AD, Malamy MH (2004) Molecular Basis for Aerotolerance of the Obligately Anaerobic Bacteroides Spp. In Strict and Facultative Anaerobes: Medical and Environmental Aspects, eds Nakano MM, Zuber P (CRC Press, New York), pp 161-169.
5. Dolla A, Fournier M, Dermoun Z (2006) Oxygen defense in sulfate-reducing bacteria. J Biotechnol 126:87-100.
6. Brioukhanov AL, Netrusov AI (2007) Aerotolerance of strictly anaerobic microorganisms and factors of defense against oxidative stress: A review. Appl Biochem Micro+ 43:567-582.
7. Muyzer G, Stams AJM (2008) The ecology and biotechnology of sulphate-reducing bacteria. Nat Rev Microbiol 6:441-454.
8. Fuseler K, Cypionka H (1995) Elemental sulfur as an intermediate of sulfide oxidation with oxygen by Desulfobulbus Propionicus. Arch Microbiol 164:104-109.
9. Van Niel EWJ, et al. (1996) The role of polyglucose in oxygen-dependent respiration by a new strain of Desulfovibrio salexigens. Fems Microbiol Ecol 21:243-253.
10. Fareleira P, et al. (2003) Response of a strict anaerobe to oxygen: Survival strategies in Desulfovibrio gigas. Microbiology 149:1513-1522.
11. Holman H-YN, Martin MC (2006) Synchrotron radiation infrared spectromicroscopy: a non-invasive molecular probe for biogeochemical processes. In Advances in Agronomy, ed Sparks D (Elsevier, New York), Vol 90, pp 79-127.
12. Woutersen S, Bakker HJ (1999) Resonant intermolecular transfer of vibrational energy in liquid water. Nature 402:507-509.
13. 2O. Nature 434:199-202.
14. m. J Phys Chem-Us 94:3416-3427.
15. Nelander B (1997) The peroxy radical as hydrogen bond donor and hydrogen bond acceptor: A matrix isolation study. J Phys Chem A 101:9092-9096.
16. Weber JM, et al. (2000) Isolating the spectroscopic signature of a hydration shell with the use of clusters: Superoxide tetrahydrate. Science 287:2461-2463.
17. (1-5). Mol Phys 99:1161-1173.
18. (n) clusters. Science 299:1367-1372.
19. Max JJ, Chapados C (2004) Infrared spectroscopy of aqueous carboxylic acids: Comparison between different acids and their salts. J Phys Chem A 108:3324-3337.
20. (n) (n=6 to 27) clusters. Science 304:1137-1140.
21. Headrick JM, et al. (2005) Spectral signatures of hydrated proton vibrations in water clusters. Science 308:1765-1769.
22. Iyengar SS (2005) Dynamical effects on vibrational and electronic spectra of hydroperoxyl radical water clusters. J Chem Phys 123:084310-084311.
23. Bush MF, Saykally RJ, Williams ER (2007) Evidence for water rings in the hexahydrated sulfate dianion from IR spectroscopy. J Am Chem Soc 129:2220-2223.
24. Heidelberg JF, et al. (2004) The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat Biotechnol 22:554-559.
25. Baumgartner LK, et al. (2006) Sulfate reducing bacteria in microbial mats: Changing paradigms, new discoveries. Sediment Geol 185:131-145.
26. Chapple ILC (1996) Role of free radicals and antioxidants in the pathogenesis of the inflammatory periodontal diseases. J Clin Pathol-Cl Mol 49:M247-M255.
27. Duffy M, et al. (2002) Sulfate-reducing bacteria colonize pouches formed for ulcerative colitis but not for familial adenomatous polyposis. Dis Colon Rectum 45:384-388.
28. Risatti JB, Capman WC, Stahl DA (1994) Community structure of a microbial mat - the phylogenetic dimension. P Natl Acad Sci USA 91:10173-10177.
29. Minz D, et al. (1999) Diversity of sulfate-reducing bacteria in oxic and anoxic regions of amicrobial mat characterized by comparative analysis of dissimilatory sulfite reductase genes. Appl Environ Microb 65:4666-4671.
30. Stams FJM, Veenhuis M, Weenk GH, Hansen TA (1983) Occurrence of polyglucose as a storage polymer in desulfovibrio species and desulfobulbus-propionicus. Arch Microbiol 136:54-59.
31. Naumann D (2000) Infrared Spectroscopy in Microbiology. In Encycloedia of Anal Chem, ed Meyers RA (John Wiley & Sons Ltd, Chichester), pp 102-131.
32. Potts RO, Guzek DB, Harris RR, Mckie JE (1985) A non-invasive, in vivo technique to quantitatively measure water concentration of the stratum-corneum using attenuated total-reflectance infrared-spectroscopy. Arch Dermatol Res 277:489-495.
33. Vernon MF, et al. (1982) Infrared vibrational predissociation spectroscopy of water clusters by the crossed laser-molecular beam technique. J Chem Phys 77:47-57.
34. Castleman AW, Keesee RG (1986) Clusters - bridging the gas and condensed phases. Acc Chem Res 19:413-419.
35. 3 in energy-production system. Arch Microbiol 125:35-42.
36. Baumgarten A, Redenius I, Kranczoch J, Cypionka H (2001) Periplasmic oxygen reduction by Desulfovibrio species. Arch Microbiol 176:306-309.
37. Fitz RM, Cypionka H (1991) Generation of a proton gradient in Desulfovibrio vulgaris. Arch Microbiol 155:444-448.
38. Santos H, et al. (1993) Aerobic metabolism of carbon reserves by the obligate anaerobe Desulfovibrio gigas. Biochem Bioph Res Co 195:551-557.
39. Brucato JR, Palumbo ME, Strazzulla G (1997) Carbonic acid by ion implantation in water/carbon dioxide ice mixtures. Icarus 125:135-144.
40. 2 in anaerobic bacteria via a novel pathway not involving reactions of the citric-acid cycle. Arch Microbiol 145:162-172.
41. Tang Y, et al. (2007) Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry. J Bacteriol 189:940-949.
42. Kramer M, Cypionka H (1989) Sulfate formation via ATP sulfurylase in thiosulfate-disproportionating and sulfite-disproportionating bacteria. Arch Microbiol 151:232-237.
43. Fuseler K, Krekeler D, Sydow U, Cypionka H (1996) A common pathway of sulfide oxidation by sulfate-reducing bacteria. Fems Microbiol Lett 144:129-134.
44. 2O. III. Spectral diffusion, and hydrogen-bonding and rotational dynamics. J Chem Phys 118:264-272.
45. Yamashita T, Takatsuka K (2007) Hydrogen-bond assisted enormous broadening of infrared spectra of phenol-water cationic cluster: An ab initio mixed quantum-classical study. J Chem Phys 126:074304.
46. Mantele W (1993) Reaction-induced infrared difference spectroscopy for the study of protein function and reaction-mechanisms. Trends Biochem Sci 18:197-202.
47. Max JJ, Chapados C (2002) Infrared spectroscopy of aqueous carboxylic acids: Malic acid. J Phys Chem A 106:6452-6461.
48. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the folin phenol reagent. J Biol Chem 193:265-275.
49. Chaplin MF (1986) Monosaccharides. In Carbohydrate analysis, eds Chaplin, MF, Kennedy JF (IRL Press, Oxford), pp 1-4.
50. Leuko S, Legat A, Fendrihan S, Stan-Lotter H (2004) Evaluation of the LIVE/DEAD BacLight kit for detection of extremophilic archaea and visualization of microorganisms in environmental hypersaline samples. Appl Environ Microb 70:6884-6886.
51. Kropinski AM, Ghiorse WC, Greenberg EP (1988) The intracellular polyglucose storage granules of Spirochaeta aurantia. Arch Microbiol 150:289-295.