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Volumn 26, Issue 2, 2010, Pages 168-194

Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN ANALYSIS; DATA SET; MUSTELID; PARSIMONY ANALYSIS; PHYLOGENETICS; PROBABILITY; RECONSTRUCTION;

EID: 77951170797     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2009.00281.x     Document Type: Article
Times cited : (66)

References (156)
  • 1
    • 33845381928 scopus 로고    scopus 로고
    • The posterior and the prior in Bayesian phylogenetics
    • Alfaro ME, Holder MT. The posterior and the prior in Bayesian phylogenetics. Annu. Rev. Ecol. Evol. Syst. 2006, 37:19-42.
    • (2006) Annu. Rev. Ecol. Evol. Syst. , vol.37 , pp. 19-42
    • Alfaro, M.E.1    Holder, M.T.2
  • 2
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro ME, Zoller S, Lutzoni F. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol. Biol. Evol. 2003, 20:255-266.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 0141609704 scopus 로고    scopus 로고
    • A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
    • Amrine-Madsen H, Koepfli K-P, Wayne RK, Springer MS. A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Mol. Phylogenet. Evol. 2003, 28:225-240.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 225-240
    • Amrine-Madsen, H.1    Koepfli, K.-.P.2    Wayne, R.K.3    Springer, M.S.4
  • 5
    • 27744572270 scopus 로고    scopus 로고
    • A molecular phylogeny of the Canidae based on six nuclear loci
    • Bardeleben C, Moore RL, Wayne RK. A molecular phylogeny of the Canidae based on six nuclear loci. Mol. Phylogenet. Evol. 2005, 37:815-831.
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 815-831
    • Bardeleben, C.1    Moore, R.L.2    Wayne, R.K.3
  • 6
    • 13244268039 scopus 로고    scopus 로고
    • New analysis of variability of cheek teeth in Eurasian badgers (Carnivora, Mustelidae, Meles)
    • Baryshnikov GF, Puzachenko AY, Abramov AV. New analysis of variability of cheek teeth in Eurasian badgers (Carnivora, Mustelidae, Meles). Russ. J. Theriol. 2003, 1(2002):133-149.
    • (2003) Russ. J. Theriol. , vol.1 , Issue.2002 , pp. 133-149
    • Baryshnikov, G.F.1    Puzachenko, A.Y.2    Abramov, A.V.3
  • 7
    • 0029794480 scopus 로고    scopus 로고
    • On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain
    • Berry V, Gascuel O. On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain. Mol. Biol. Evol. 1996, 13:999-1011.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 999-1011
    • Berry, V.1    Gascuel, O.2
  • 8
    • 84986251481 scopus 로고    scopus 로고
    • Taxon sampling versus computational complexity and their impact on obtaining the tree of life
    • Hodkinson TR, Parnell JAN. Eds, CRC Press, Boca Raton, Florida
    • Bininda-Emonds ORP, Stamatakis A. Taxon sampling versus computational complexity and their impact on obtaining the tree of life. Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa 2006, 77-95. Hodkinson TR, Parnell JAN. In, Eds, CRC Press, Boca Raton, Florida, pp
    • (2006) Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa , pp. 77-95
    • Bininda-Emonds, O.R.P.1    Stamatakis, A.2
  • 10
    • 43949162677 scopus 로고
    • Phylogenetic relationships within the extant Mustelidae (Carnivora): appraisal of the cladistic status of the Simpsonian subfamilies
    • Bryant HN, Russell AP, Fitch WD. Phylogenetic relationships within the extant Mustelidae (Carnivora): appraisal of the cladistic status of the Simpsonian subfamilies. Zool. J. Linn. Soc. 1993, 108:301-334.
    • (1993) Zool. J. Linn. Soc. , vol.108 , pp. 301-334
    • Bryant, H.N.1    Russell, A.P.2    Fitch, W.D.3
  • 11
    • 1942509236 scopus 로고    scopus 로고
    • The secondary structure of mammalian mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach
    • Burk A, Douzery EJP, Springer MS. The secondary structure of mammalian mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach. J. Mammal. Evol. 2002, 9:225-252.
    • (2002) J. Mammal. Evol. , vol.9 , pp. 225-252
    • Burk, A.1    Douzery, E.J.P.2    Springer, M.S.3
  • 12
    • 34447341925 scopus 로고    scopus 로고
    • SDM: A fast distance-based approach for (super)tree building in phylogenomics
    • Criscuolo A, Berry V, Douzery EJP, Gascuel O. SDM: A fast distance-based approach for (super)tree building in phylogenomics. Syst. Biol. 2006, 55:740-755.
    • (2006) Syst. Biol. , vol.55 , pp. 740-755
    • Criscuolo, A.1    Berry, V.2    Douzery, E.J.P.3    Gascuel, O.4
  • 14
    • 4444241486 scopus 로고    scopus 로고
    • A phylogeny of the extant Phocidae inferred from complete mitochondrial DNA coding regions
    • Davis CS, Delisle I, Stirling I, Siniff DB, Strobeck C. A phylogeny of the extant Phocidae inferred from complete mitochondrial DNA coding regions. Mol. Phylogenet. Evol. 2004, 33:363-377.
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 363-377
    • Davis, C.S.1    Delisle, I.2    Stirling, I.3    Siniff, D.B.4    Strobeck, C.5
  • 16
    • 0034758674 scopus 로고    scopus 로고
    • Mitochondrial phylogeography and population history of pine martens Martes martes compared with polecats Mustela putorius
    • Davison A, Birks JDS, Brookes RC, Messenger JE, Griffiths HI. Mitochondrial phylogeography and population history of pine martens Martes martes compared with polecats Mustela putorius. Mol. Ecol. 2001, 10:2479-2488.
    • (2001) Mol. Ecol. , vol.10 , pp. 2479-2488
    • Davison, A.1    Birks, J.D.S.2    Brookes, R.C.3    Messenger, J.E.4    Griffiths, H.I.5
  • 17
    • 0034350376 scopus 로고    scopus 로고
    • A simulation study of reduced tree-search effort in bootstrap resampling analysis
    • DeBry RW, Olmstead RG. A simulation study of reduced tree-search effort in bootstrap resampling analysis. Syst. Biol. 2000, 49:171-179.
    • (2000) Syst. Biol. , vol.49 , pp. 171-179
    • DeBry, R.W.1    Olmstead, R.G.2
  • 18
    • 25144483275 scopus 로고    scopus 로고
    • A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes
    • Delisle I, Strobeck C. A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes. Mol. Phylogenet. Evol. 2005, 37:192-201.
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 192-201
    • Delisle, I.1    Strobeck, C.2
  • 19
    • 0036670809 scopus 로고    scopus 로고
    • Genetic distinction of marten species by fixation of a microsatellite region
    • Domingo-Roura X. Genetic distinction of marten species by fixation of a microsatellite region. J. Mammal. 2002, 83:907-912.
    • (2002) J. Mammal. , vol.83 , pp. 907-912
    • Domingo-Roura, X.1
  • 20
    • 24644491209 scopus 로고    scopus 로고
    • Phylogenetic inference and comparative evolution of a complex microsatellite and its flanking regions in carnivores
    • Domingo-Roura X, López-Giráldez F, Saeki M, Marmi J. Phylogenetic inference and comparative evolution of a complex microsatellite and its flanking regions in carnivores. Genet. Res. 2005, 85:223-233.
    • (2005) Genet. Res. , vol.85 , pp. 223-233
    • Domingo-Roura, X.1    López-Giráldez, F.2    Saeki, M.3    Marmi, J.4
  • 22
    • 0037329108 scopus 로고    scopus 로고
    • Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
    • Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJP. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 2003, 20:248-254.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 248-254
    • Douady, C.J.1    Delsuc, F.2    Boucher, Y.3    Doolittle, W.F.4    Douzery, E.J.P.5
  • 23
    • 0030817871 scopus 로고    scopus 로고
    • The mitochondrial control region of Cervidae: evolutionary patterns and phylogenetic content
    • Douzery E, Randi E. The mitochondrial control region of Cervidae: evolutionary patterns and phylogenetic content. Mol. Biol. Evol. 1997, 14:1154-1166.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1154-1166
    • Douzery, E.1    Randi, E.2
  • 24
    • 0031543839 scopus 로고    scopus 로고
    • Systematics of mustelid-like carnivores
    • Dragoo JW, Honeycutt RL. Systematics of mustelid-like carnivores. J. Mammal. 1997, 78:426-443.
    • (1997) J. Mammal. , vol.78 , pp. 426-443
    • Dragoo, J.W.1    Honeycutt, R.L.2
  • 26
    • 0037406684 scopus 로고    scopus 로고
    • Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood
    • Dunn KA, McEachran JD, Honeycutt RL. Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood. Mol. Phylogenet. Evol. 2003, 27:259-270.
    • (2003) Mol. Phylogenet. Evol. , vol.27 , pp. 259-270
    • Dunn, K.A.1    McEachran, J.D.2    Honeycutt, R.L.3
  • 27
    • 0029982849 scopus 로고    scopus 로고
    • Bootstrap confidence levels for phylogenetic trees
    • Efron B, Halloran E, Holmes S. Bootstrap confidence levels for phylogenetic trees. Proc. Natl Acad. Sci. USA 1996, 93:13429-13434.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13429-13434
    • Efron, B.1    Halloran, E.2    Holmes, S.3
  • 28
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P, Svennblad B, Britton T, Oxelman B. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 2003, 52:665-673.
    • (2003) Syst. Biol. , vol.52 , pp. 665-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 30
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 1981, 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 31
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 32
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts
    • Felsenstein J. Inferring Phylogenies 2004, Sinauer Associates, Sunderland, Massachusetts
    • (2004) Inferring Phylogenies
    • Felsenstein, J.1
  • 33
    • 12044259827 scopus 로고
    • Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull
    • Felsenstein J, Kishino H. Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull. Syst. Biol. 1993, 42:193-200.
    • (1993) Syst. Biol. , vol.42 , pp. 193-200
    • Felsenstein, J.1    Kishino, H.2
  • 34
    • 0032087257 scopus 로고    scopus 로고
    • Phylogeny of the Carnivora (Mammalia): congruence vs incompatibility among multiple data sets
    • Flynn JJ, Nedbal MA. Phylogeny of the Carnivora (Mammalia): congruence vs incompatibility among multiple data sets. Mol. Phylogenet. Evol. 1998, 9:414-426.
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 414-426
    • Flynn, J.J.1    Nedbal, M.A.2
  • 36
    • 19044400807 scopus 로고    scopus 로고
    • Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships
    • Flynn JJ, Finarelli JA, Zehr S, Hsu J, Nedbal MA. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 2005, 54:317-337.
    • (2005) Syst. Biol. , vol.54 , pp. 317-337
    • Flynn, J.J.1    Finarelli, J.A.2    Zehr, S.3    Hsu, J.4    Nedbal, M.A.5
  • 37
    • 33748204460 scopus 로고    scopus 로고
    • Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets
    • Fulton TL, Strobeck C. Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets. Mol. Phylogenet. Evol. 2006, 41:165-181.
    • (2006) Mol. Phylogenet. Evol. , vol.41 , pp. 165-181
    • Fulton, T.L.1    Strobeck, C.2
  • 38
    • 34248671391 scopus 로고    scopus 로고
    • Novel phylogeny of the raccoon family (Procyonidae: Carnivora) based on nuclear and mitochondrial DNA evidence
    • Fulton TL, Strobeck C. Novel phylogeny of the raccoon family (Procyonidae: Carnivora) based on nuclear and mitochondrial DNA evidence. Mol. Phylogenet. Evol. 2007, 43:1171-1177.
    • (2007) Mol. Phylogenet. Evol. , vol.43 , pp. 1171-1177
    • Fulton, T.L.1    Strobeck, C.2
  • 39
    • 1842731717 scopus 로고    scopus 로고
    • The naming of wild animal species and their domestic derivatives
    • Gentry A, Clutton-Brock J, Groves CP. The naming of wild animal species and their domestic derivatives. J. Archaeol. Sci. 2004, 31:645-651.
    • (2004) J. Archaeol. Sci. , vol.31 , pp. 645-651
    • Gentry, A.1    Clutton-Brock, J.2    Groves, C.P.3
  • 40
    • 1542614587 scopus 로고    scopus 로고
    • Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta)
    • Gontcharov AA, Marin B, Melkonian M. Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta). Mol. Biol. Evol. 2004, 21:612-624.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 612-624
    • Gontcharov, A.A.1    Marin, B.2    Melkonian, M.3
  • 41
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 1985, 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 42
    • 0026562079 scopus 로고
    • The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies
    • Hedges SB. The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol. Biol. Evol. 1992, 9:366-369.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 366-369
    • Hedges, S.B.1
  • 43
    • 0033735040 scopus 로고    scopus 로고
    • Search for characteristic structural features of mammalian mitochondrial tRNAs
    • Helm M, Brulé H, Friede D, Giegé R, Pütz D, Florentz C. Search for characteristic structural features of mammalian mitochondrial tRNAs. RNA 2000, 6:1356-1379.
    • (2000) RNA , vol.6 , pp. 1356-1379
    • Helm, M.1    Brulé, H.2    Friede, D.3    Giegé, R.4    Pütz, D.5    Florentz, C.6
  • 44
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis DM. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 1998, 47:3-8.
    • (1998) Syst. Biol. , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 45
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 1993, 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 46
    • 0000631106 scopus 로고    scopus 로고
    • Molecules versus morphology in systematics: conflicts, artifacts, and misconceptions
    • Wiens JJ. Ed, Smithsonian Institution Press, Washington, DC
    • Hillis DM, Wiens JJ. Molecules versus morphology in systematics: conflicts, artifacts, and misconceptions. Phylogenetic Analysis of Morphological Data 2000, 1-19. Wiens JJ, In, Ed, Smithsonian Institution Press, Washington, DC, pp
    • (2000) Phylogenetic Analysis of Morphological Data , pp. 1-19
    • Hillis, D.M.1    Wiens, J.J.2
  • 47
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: traditional and Bayesian approaches
    • Holder M, Lewis PO. Phylogeny estimation: traditional and Bayesian approaches. Nature Rev. Genet. 2003, 4:275-284.
    • (2003) Nature Rev. Genet. , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 48
    • 0346271739 scopus 로고    scopus 로고
    • Bootstrapping phylogenetic trees: theory and methods
    • Holmes S. Bootstrapping phylogenetic trees: theory and methods. Stat. Sci. 2003, 18:241-255.
    • (2003) Stat. Sci. , vol.18 , pp. 241-255
    • Holmes, S.1
  • 50
    • 26644445727 scopus 로고    scopus 로고
    • Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages
    • Hosoda T, Sato JJ, Shimada T, Campbell KL, Suzuki H. Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages. J. Hered. 2005, 96:607-613.
    • (2005) J. Hered. , vol.96 , pp. 607-613
    • Hosoda, T.1    Sato, J.J.2    Shimada, T.3    Campbell, K.L.4    Suzuki, H.5
  • 51
    • 11144277878 scopus 로고    scopus 로고
    • Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
    • Huelsenbeck JP, Rannala B. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 2004, 53:904-913.
    • (2004) Syst. Biol. , vol.53 , pp. 904-913
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 52
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck JP, Larget B, Miller RE, Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 2002, 51:673-688.
    • (2002) Syst. Biol. , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 53
    • 0036676024 scopus 로고    scopus 로고
    • Sequence comparison of the dopamine receptor D4 exon III repetitive region in several species of the order Carnivora
    • Inoue-Murayama M, Matsuura N, Murayama Y, Tsubota T, Iwasaki T, Kitagawa H, Ito S. Sequence comparison of the dopamine receptor D4 exon III repetitive region in several species of the order Carnivora. J. Vet. Med. Sci. 2002, 64:747-749.
    • (2002) J. Vet. Med. Sci. , vol.64 , pp. 747-749
    • Inoue-Murayama, M.1    Matsuura, N.2    Murayama, Y.3    Tsubota, T.4    Iwasaki, T.5    Kitagawa, H.6    Ito, S.7
  • 55
    • 0036554650 scopus 로고    scopus 로고
    • Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions
    • Kearney M. Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions. Syst. Biol. 2002, 51:369-381.
    • (2002) Syst. Biol. , vol.51 , pp. 369-381
    • Kearney, M.1
  • 56
    • 0037649497 scopus 로고    scopus 로고
    • Problems due to missing data in phylogenetic analyses including fossils: a critical review
    • Kearney M, Clark JM. Problems due to missing data in phylogenetic analyses including fossils: a critical review. J. Vertebr. Paleontol. 2003, 23:263-274.
    • (2003) J. Vertebr. Paleontol. , vol.23 , pp. 263-274
    • Kearney, M.1    Clark, J.M.2
  • 57
    • 25844529500 scopus 로고    scopus 로고
    • Structure of the mitochondrial control region of the Eurasian otter (Lutra lutra; Carnivora, Mustelidae): patterns of genetic heterogeneity and implications for conservation of the species in Italy
    • Ketmaier V, Bernardini C. Structure of the mitochondrial control region of the Eurasian otter (Lutra lutra; Carnivora, Mustelidae): patterns of genetic heterogeneity and implications for conservation of the species in Italy. J. Hered. 2005, 96:318-328.
    • (2005) J. Hered. , vol.96 , pp. 318-328
    • Ketmaier, V.1    Bernardini, C.2
  • 58
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 59
    • 0029365329 scopus 로고
    • Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs
    • Kjer KM. Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Mol. Phylogenet. Evol. 1995, 4:314-330.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 314-330
    • Kjer, K.M.1
  • 60
    • 34247577270 scopus 로고    scopus 로고
    • Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment
    • Kjer KM, Gillespie JJ, Ober KA. Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment. Syst. Biol. 2007, 56:133-146.
    • (2007) Syst. Biol. , vol.56 , pp. 133-146
    • Kjer, K.M.1    Gillespie, J.J.2    Ober, K.A.3
  • 61
    • 0032437238 scopus 로고    scopus 로고
    • Phylogenetic relationships of otters (Carnivora: Mustelidae) based on mitochondrial cytochrome b sequences
    • Koepfli K-P, Wayne RK. Phylogenetic relationships of otters (Carnivora: Mustelidae) based on mitochondrial cytochrome b sequences. J. Zool. 1998, 246:401-416.
    • (1998) J. Zool. , vol.246 , pp. 401-416
    • Koepfli, K.-.P.1    Wayne, R.K.2
  • 62
    • 0242507502 scopus 로고    scopus 로고
    • Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora)
    • Koepfli K-P, Wayne RK. Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Syst. Biol. 2003, 52:571-593.
    • (2003) Syst. Biol. , vol.52 , pp. 571-593
    • Koepfli, K.-.P.1    Wayne, R.K.2
  • 64
    • 41549131274 scopus 로고    scopus 로고
    • Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation
    • Koepfli K-P, Deere KA, Slater GJ, Begg C, Begg K, Grassman L, Lucherini M, Veron G, Wayne RK. Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biol. 2008a, 6(10):1-22.
    • (2008) BMC Biol. , vol.6 , Issue.10 , pp. 1-22
    • Koepfli, K.-.P.1    Deere, K.A.2    Slater, G.J.3    Begg, C.4    Begg, K.5    Grassman, L.6    Lucherini, M.7    Veron, G.8    Wayne, R.K.9
  • 66
    • 0033241697 scopus 로고    scopus 로고
    • Intraspecific variation of mitochondrial cytochrome b gene sequences of the Japanese marten Martes melampus and the sable Martes zibellina (Mustelidae, Carnivora, Mammalia) in Japan
    • Kurose N, Masuda R, Siriaroonrat B, Yoshida MC. Intraspecific variation of mitochondrial cytochrome b gene sequences of the Japanese marten Martes melampus and the sable Martes zibellina (Mustelidae, Carnivora, Mammalia) in Japan. Zool. Sci. 1999a, 16:693-700.
    • (1999) Zool. Sci. , vol.16 , pp. 693-700
    • Kurose, N.1    Masuda, R.2    Siriaroonrat, B.3    Yoshida, M.C.4
  • 67
    • 0033474179 scopus 로고    scopus 로고
    • Phylogeographic variation in two mustelines, the least weasel Mustela nivalis and the ermine M. erminea of Japan, based on mitochondrial DNA control region sequences
    • Kurose N, Masuda R, Yoshida MC. Phylogeographic variation in two mustelines, the least weasel Mustela nivalis and the ermine M. erminea of Japan, based on mitochondrial DNA control region sequences. Zool. Sci. 1999b, 16:971-977.
    • (1999) Zool. Sci. , vol.16 , pp. 971-977
    • Kurose, N.1    Masuda, R.2    Yoshida, M.C.3
  • 68
    • 0034215179 scopus 로고    scopus 로고
    • Intrageneric diversity of the cytochrome b gene and phylogeny of Eurasian species of the genus Mustela (Mustelidae, Carnivora)
    • Kurose N, Abramov AV, Masuda R. Intrageneric diversity of the cytochrome b gene and phylogeny of Eurasian species of the genus Mustela (Mustelidae, Carnivora). Zool. Sci. 2000, 17:673-679.
    • (2000) Zool. Sci. , vol.17 , pp. 673-679
    • Kurose, N.1    Abramov, A.V.2    Masuda, R.3
  • 69
    • 0035540168 scopus 로고    scopus 로고
    • Low genetic diversity in Japanese populations of the Eurasian badger Meles meles (Mustelidae, Carnivora) revealed by mitochondrial cytochrome b gene sequences
    • Kurose N, Kaneko Y, Abramov AV, Siriaroonrat B, Masuda R. Low genetic diversity in Japanese populations of the Eurasian badger Meles meles (Mustelidae, Carnivora) revealed by mitochondrial cytochrome b gene sequences. Zool. Sci. 2001, 18:1145-1151.
    • (2001) Zool. Sci. , vol.18 , pp. 1145-1151
    • Kurose, N.1    Kaneko, Y.2    Abramov, A.V.3    Siriaroonrat, B.4    Masuda, R.5
  • 70
    • 28844485711 scopus 로고    scopus 로고
    • Comparative phylogeography between the ermine Mustela erminea and the least weasel M. nivalis of Palaearctic and Nearctic regions, based on analysis of mitochondrial DNA control region sequences
    • Kurose N, Abramov AV, Masuda R. Comparative phylogeography between the ermine Mustela erminea and the least weasel M. nivalis of Palaearctic and Nearctic regions, based on analysis of mitochondrial DNA control region sequences. Zool. Sci. 2005, 22:1069-1078.
    • (2005) Zool. Sci. , vol.22 , pp. 1069-1078
    • Kurose, N.1    Abramov, A.V.2    Masuda, R.3
  • 71
    • 43449094358 scopus 로고    scopus 로고
    • Molecular phylogeny and taxonomy of the genus Mustela (Mustelidae, Carnivora), inferred from mitochondrial DNA sequences: new perspectives on phylogenetic status of the back-striped weasel and American mink
    • Kurose N, Abramov AV, Masuda R. Molecular phylogeny and taxonomy of the genus Mustela (Mustelidae, Carnivora), inferred from mitochondrial DNA sequences: new perspectives on phylogenetic status of the back-striped weasel and American mink. Mammal Study 2008, 33:25-33.
    • (2008) Mammal Study , vol.33 , pp. 25-33
    • Kurose, N.1    Abramov, A.V.2    Masuda, R.3
  • 72
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 1984, 20:86-93.
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 73
    • 29244487884 scopus 로고    scopus 로고
    • Identification and characterization of tandem repeats in exon III of dopamine receptor D4 (DRD4) genes from different mammalian species
    • Larsen SA, Mogensen L, Dietz R, Baagøe HJ, Andersen M, Werge T, Rasmussen HB. Identification and characterization of tandem repeats in exon III of dopamine receptor D4 (DRD4) genes from different mammalian species. DNA Cell Biol. 2005, 24:795-804.
    • (2005) DNA Cell Biol. , vol.24 , pp. 795-804
    • Larsen, S.A.1    Mogensen, L.2    Dietz, R.3    Baagøe, H.J.4    Andersen, M.5    Werge, T.6    Rasmussen, H.B.7
  • 74
    • 0029879732 scopus 로고    scopus 로고
    • Phylogenetic analyses of complete cytochrome b genes of the order Carnivora with particular emphasis on the Caniformia
    • Ledje C, Árnason U. Phylogenetic analyses of complete cytochrome b genes of the order Carnivora with particular emphasis on the Caniformia. J. Mol. Evol. 1996a, 42:135-144.
    • (1996) J. Mol. Evol. , vol.42 , pp. 135-144
    • Ledje, C.1    Árnason, T.2
  • 75
    • 0030472358 scopus 로고    scopus 로고
    • Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene
    • Ledje C, Árnason U. Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene. J. Mol. Evol. 1996b, 43:641-649.
    • (1996) J. Mol. Evol. , vol.43 , pp. 641-649
    • Ledje, C.1    Árnason, T.2
  • 76
    • 12044252747 scopus 로고
    • What is the bootstrap technique?
    • Li W-H, Zharkikh A. What is the bootstrap technique? Syst. Biol. 1994, 43:424-430.
    • (1994) Syst. Biol. , vol.43 , pp. 424-430
    • Li, W.-.H.1    Zharkikh, A.2
  • 78
    • 17144419316 scopus 로고    scopus 로고
    • Genetic distinction of American and European mink (Mustela vison and M. lutreola) and European polecat (M. putorius) hair samples by detection of a species-specific SINE and a RFLP assay
    • López-Giráldez F, Gómez-Moliner BJ, Marmi J, Domingo-Roura X. Genetic distinction of American and European mink (Mustela vison and M. lutreola) and European polecat (M. putorius) hair samples by detection of a species-specific SINE and a RFLP assay. J. Zool. 2005, 265:405-410.
    • (2005) J. Zool. , vol.265 , pp. 405-410
    • López-Giráldez, F.1    Gómez-Moliner, B.J.2    Marmi, J.3    Domingo-Roura, X.4
  • 80
    • 8744294820 scopus 로고    scopus 로고
    • Phylogeny, evolutionary history and taxonomy of the Mustelidae based on sequences of the cytochrome b gene and a complex repetitive flanking region
    • Marmi J, López-Giráldez JF, Domingo-Roura X. Phylogeny, evolutionary history and taxonomy of the Mustelidae based on sequences of the cytochrome b gene and a complex repetitive flanking region. Zool. Scr. 2004, 33:481-499.
    • (2004) Zool. Scr. , vol.33 , pp. 481-499
    • Marmi, J.1    López-Giráldez, J.F.2    Domingo-Roura, X.3
  • 82
    • 33845446297 scopus 로고    scopus 로고
    • Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors
    • Marshall DC, Simon C, Buckley TR. Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors. Syst. Biol. 2006, 55:993-1003.
    • (2006) Syst. Biol. , vol.55 , pp. 993-1003
    • Marshall, D.C.1    Simon, C.2    Buckley, T.R.3
  • 85
    • 0242318900 scopus 로고    scopus 로고
    • Is the western population of the European mink, (Mustela lutreola), a distinct Management Unit for conservation?
    • Michaux JR, Libois R, Davison A, Chevret P, Rosoux R. Is the western population of the European mink, (Mustela lutreola), a distinct Management Unit for conservation? Biol. Conserv. 2004, 115:357-367.
    • (2004) Biol. Conserv. , vol.115 , pp. 357-367
    • Michaux, J.R.1    Libois, R.2    Davison, A.3    Chevret, P.4    Rosoux, R.5
  • 86
    • 21244457228 scopus 로고    scopus 로고
    • Conservation genetics and population history of the threatened European mink Mustela lutreola, with an emphasis on the west European population
    • Michaux JR, Hardy OJ, Justy F, Fournier P, Kranz A, Cabria M, Davison A, Rosoux R, Libois R. Conservation genetics and population history of the threatened European mink Mustela lutreola, with an emphasis on the west European population. Mol. Ecol. 2005, 14:2373-2388.
    • (2005) Mol. Ecol. , vol.14 , pp. 2373-2388
    • Michaux, J.R.1    Hardy, O.J.2    Justy, F.3    Fournier, P.4    Kranz, A.5    Cabria, M.6    Davison, A.7    Rosoux, R.8    Libois, R.9
  • 87
    • 33746439442 scopus 로고    scopus 로고
    • Bootstrapping phylogenies: large deviations and dispersion effects
    • Newton MA. Bootstrapping phylogenies: large deviations and dispersion effects. Biometrika 1996, 83:315-328.
    • (1996) Biometrika , vol.83 , pp. 315-328
    • Newton, M.A.1
  • 88
    • 35448965696 scopus 로고    scopus 로고
    • Phylogenetic relationships and divergence times among dormice (Rodentia, Gliridae) based on three nuclear genes
    • Nunome M, Yasuda SP, Sato JJ, Vogel P, Suzuki H. Phylogenetic relationships and divergence times among dormice (Rodentia, Gliridae) based on three nuclear genes. Zool. Scr. 2007, 36:537-546.
    • (2007) Zool. Scr. , vol.36 , pp. 537-546
    • Nunome, M.1    Yasuda, S.P.2    Sato, J.J.3    Vogel, P.4    Suzuki, H.5
  • 90
    • 33847312692 scopus 로고    scopus 로고
    • How should gaps be treated in parsimony? A comparison of approaches using simulation
    • Ogden TH, Rosenberg MS. How should gaps be treated in parsimony? A comparison of approaches using simulation. Mol. Phylogenet. Evol. 2007, 42:817-826.
    • (2007) Mol. Phylogenet. Evol. , vol.42 , pp. 817-826
    • Ogden, T.H.1    Rosenberg, M.S.2
  • 92
    • 9744250258 scopus 로고    scopus 로고
    • Strange Bayes indeed: uniform topological priors imply non-uniform clade priors
    • Pickett KM, Randle CP. Strange Bayes indeed: uniform topological priors imply non-uniform clade priors. Mol. Phylogenet. Evol. 2005, 34:203-211.
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 203-211
    • Pickett, K.M.1    Randle, C.P.2
  • 94
    • 0001450786 scopus 로고    scopus 로고
    • Is the Guadeloupean racoon (Procyon minor) really an endemic species? New insights from molecular and chromosomal analyses
    • Pons J-M, Volobouev V, Ducroz J-F, Tillier A, Reudet D. Is the Guadeloupean racoon (Procyon minor) really an endemic species? New insights from molecular and chromosomal analyses. J. Zool. Syst. Evol. Res. 1999, 37:101-108.
    • (1999) J. Zool. Syst. Evol. Res. , vol.37 , pp. 101-108
    • Pons, J.-.M.1    Volobouev, V.2    Ducroz, J.-.F.3    Tillier, A.4    Reudet, D.5
  • 95
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests
    • Posada D, Buckley TR. Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 96
    • 33845627286 scopus 로고    scopus 로고
    • The supermatrix approach to systematics
    • de Queiroz A, Gatesy J. The supermatrix approach to systematics. Trends Ecol. Evol. 2007, 22:34-41.
    • (2007) Trends Ecol. Evol. , vol.22 , pp. 34-41
    • de Queiroz, A.1    Gatesy, J.2
  • 97
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A, Carroll SB. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 2005, 22:1337-1344.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 98
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A, Williams BL, King N, Carroll SB. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 2003, 425:798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 99
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 100
    • 77951190866 scopus 로고    scopus 로고
    • Molecular genetic study of marbled polecat (Vormela peregusna, Carnivora: Mustelidae)
    • Dokl. Biol. Sci. 407, 169-172
    • Rozhnov VV, Meschersky IG, Kholodova MV. Molecular genetic study of marbled polecat (Vormela peregusna, Carnivora: Mustelidae). Dokl. Akad. Nauk 2006, 407:567-570. Dokl. Biol. Sci. 407, 169-172
    • (2006) Dokl. Akad. Nauk , vol.407 , pp. 567-570
    • Rozhnov, V.V.1    Meschersky, I.G.2    Kholodova, M.V.3
  • 101
    • 0036821739 scopus 로고    scopus 로고
    • Taxon sampling and seed plant phylogeny
    • Rydin C, Källersjö M. Taxon sampling and seed plant phylogeny. Cladistics 2002, 18:485-513.
    • (2002) Cladistics , vol.18 , pp. 485-513
    • Rydin, C.1    Källersjö, M.2
  • 102
    • 0029526909 scopus 로고
    • Objections to bootstrapping phylogenies: a critique
    • Sanderson MJ. Objections to bootstrapping phylogenies: a critique. Syst. Biol. 1995, 44:299-320.
    • (1995) Syst. Biol. , vol.44 , pp. 299-320
    • Sanderson, M.J.1
  • 103
    • 0034351392 scopus 로고    scopus 로고
    • Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae)
    • Sanderson MJ, Wojciechowski MF. Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae). Syst. Biol. 2000, 49:671-685.
    • (2000) Syst. Biol. , vol.49 , pp. 671-685
    • Sanderson, M.J.1    Wojciechowski, M.F.2
  • 104
    • 77951180964 scopus 로고    scopus 로고
    • Molecular phylogeny of Mustelidae inferred from multiple gene sequences
    • Special Volume, [in Japanese]
    • Sato JJ. Molecular phylogeny of Mustelidae inferred from multiple gene sequences. Animate 2006, 1:95-100. Special Volume, [in Japanese]
    • (2006) Animate , vol.1 , pp. 95-100
    • Sato, J.J.1
  • 105
    • 77951145930 scopus 로고    scopus 로고
    • Evolutionary correlation between mustelids and muroid rodents
    • In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo
    • Sato JJ, Wolsan M. Evolutionary correlation between mustelids and muroid rodents. 2005, 81-82. In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo, pp
    • (2005) , pp. 81-82
    • Sato, J.J.1    Wolsan, M.2
  • 106
    • 0038175393 scopus 로고    scopus 로고
    • Phylogenetic relationships and divergence times among mustelids (Mammalia: Carnivora) based on nucleotide sequences of the nuclear interphotoreceptor retinoid binding protein and mitochondrial cytochrome b genes
    • Sato JJ, Hosoda T, Wolsan M, Tsuchiya K, Yamamoto Y, Suzuki H. Phylogenetic relationships and divergence times among mustelids (Mammalia: Carnivora) based on nucleotide sequences of the nuclear interphotoreceptor retinoid binding protein and mitochondrial cytochrome b genes. Zool. Sci. 2003, 20:243-264.
    • (2003) Zool. Sci. , vol.20 , pp. 243-264
    • Sato, J.J.1    Hosoda, T.2    Wolsan, M.3    Tsuchiya, K.4    Yamamoto, Y.5    Suzuki, H.6
  • 107
    • 85047691275 scopus 로고    scopus 로고
    • Molecular phylogeny of arctoids (Mammalia: Carnivora) with emphasis on phylogenetic and taxonomic positions of the ferret-badgers and skunks
    • Sato JJ, Hosoda T, Wolsan M, Suzuki H. Molecular phylogeny of arctoids (Mammalia: Carnivora) with emphasis on phylogenetic and taxonomic positions of the ferret-badgers and skunks. Zool. Sci. 2004, 21:111-118.
    • (2004) Zool. Sci. , vol.21 , pp. 111-118
    • Sato, J.J.1    Hosoda, T.2    Wolsan, M.3    Suzuki, H.4
  • 108
    • 33744499714 scopus 로고    scopus 로고
    • Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea
    • Sato JJ, Wolsan M, Suzuki H, Hosoda T, Yamaguchi Y, Hiyama K, Kobayashi M, Minami S. Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea. Zool. Sci. 2006a, 23:125-146.
    • (2006) Zool. Sci. , vol.23 , pp. 125-146
    • Sato, J.J.1    Wolsan, M.2    Suzuki, H.3    Hosoda, T.4    Yamaguchi, Y.5    Hiyama, K.6    Kobayashi, M.7    Minami, S.8
  • 109
    • 77951176117 scopus 로고    scopus 로고
    • Synchronized diversification between mustelid carnivorans and murid rodents inferred from multiple nuclear gene sequences
    • In: LIPI-JSPS Core University Program: International Symposium on Nature and Land Management of Tropical Peat Land in South East Asia, Bogor, Indonesia, 20-21 September 2006, Research Center for Biology, Indonesian Institute of Sciences, Bogor,
    • Sato JJ, Wolsan M, Hosoda T, Yamaguchi Y, Suzuki H. Synchronized diversification between mustelid carnivorans and murid rodents inferred from multiple nuclear gene sequences. 2006b, 32-33. In: LIPI-JSPS Core University Program: International Symposium on Nature and Land Management of Tropical Peat Land in South East Asia, Bogor, Indonesia, 20-21 September 2006, Research Center for Biology, Indonesian Institute of Sciences, Bogor, pp
    • (2006) , pp. 32-33
    • Sato, J.J.1    Wolsan, M.2    Hosoda, T.3    Yamaguchi, Y.4    Suzuki, H.5
  • 111
    • 2442507933 scopus 로고    scopus 로고
    • Independence of alignment and tree search
    • Simmons MP. Independence of alignment and tree search. Mol. Phylogenet. Evol. 2004, 31:874-879.
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 874-879
    • Simmons, M.P.1
  • 113
    • 34447280568 scopus 로고    scopus 로고
    • The relative performance of indel-coding methods in simulations
    • Simmons MP, Müller K, Norton AP. The relative performance of indel-coding methods in simulations. Mol. Phylogenet. Evol. 2007, 44:724-740.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 724-740
    • Simmons, M.P.1    Müller, K.2    Norton, A.P.3
  • 114
    • 33845385936 scopus 로고    scopus 로고
    • Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
    • Simon C, Buckley TR, Frati F, Stewart JB, Beckenbach AT. Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 2006, 37:545-579.
    • (2006) Annu. Rev. Ecol. Evol. Syst. , vol.37 , pp. 545-579
    • Simon, C.1    Buckley, T.R.2    Frati, F.3    Stewart, J.B.4    Beckenbach, A.T.5
  • 115
    • 0032088238 scopus 로고    scopus 로고
    • What does palaeontology contribute to systematics in a molecular world?
    • Smith AB. What does palaeontology contribute to systematics in a molecular world? Mol. Phylogenet. Evol. 1998, 9:437-447.
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 437-447
    • Smith, A.B.1
  • 116
    • 0029815120 scopus 로고    scopus 로고
    • Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules
    • Springer MS, Douzery E. Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules. J. Mol. Evol. 1996, 43:357-373.
    • (1996) J. Mol. Evol. , vol.43 , pp. 357-373
    • Springer, M.S.1    Douzery, E.2
  • 117
    • 42549119947 scopus 로고    scopus 로고
    • Use of PCR amplification and restriction enzyme digestion of mitochondrial D-loop for identification of mustelids in Ireland
    • Statham M, Turner PD, O'Reilly C. Use of PCR amplification and restriction enzyme digestion of mitochondrial D-loop for identification of mustelids in Ireland. Irish Nat. J. 2005, 28:1-6.
    • (2005) Irish Nat. J. , vol.28 , pp. 1-6
    • Statham, M.1    Turner, P.D.2    O'Reilly, C.3
  • 118
    • 33646018298 scopus 로고    scopus 로고
    • On the impossibility of uniform priors on clades
    • Steel M, Pickett KM. On the impossibility of uniform priors on clades. Mol. Phylogenet. Evol. 2006, 39:585-586.
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 585-586
    • Steel, M.1    Pickett, K.M.2
  • 119
    • 0037058983 scopus 로고    scopus 로고
    • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    • Suzuki Y, Glazko GV, Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Natl Acad. Sci. USA 2002, 99:16138-16143.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 16138-16143
    • Suzuki, Y.1    Glazko, G.V.2    Nei, M.3
  • 120
    • 33644593859 scopus 로고    scopus 로고
    • Fundamental differences between the methods of maximum likelihood and maximum posterior probability in phylogenetics
    • Svennblad B, Erixon P, Oxelman B, Britton T. Fundamental differences between the methods of maximum likelihood and maximum posterior probability in phylogenetics. Syst. Biol. 2006, 55:116-121.
    • (2006) Syst. Biol. , vol.55 , pp. 116-121
    • Svennblad, B.1    Erixon, P.2    Oxelman, B.3    Britton, T.4
  • 123
    • 0028390944 scopus 로고
    • Higher level relationships of the arctoid Carnivora based on sequence data and " total evidence"
    • Vrana PB, Milinkovitch MC, Powell JR, Wheeler WC. Higher level relationships of the arctoid Carnivora based on sequence data and " total evidence" Mol. Phylogenet. Evol. 1994, 3:47-58.
    • (1994) Mol. Phylogenet. Evol. , vol.3 , pp. 47-58
    • Vrana, P.B.1    Milinkovitch, M.C.2    Powell, J.R.3    Wheeler, W.C.4
  • 124
    • 0035140699 scopus 로고    scopus 로고
    • Genetic variation and population structure in Scandinavian wolverine (Gulo gulo) populations
    • Walker CW, Vilà C, Landa A, Lindén M, Ellegren H. Genetic variation and population structure in Scandinavian wolverine (Gulo gulo) populations. Mol. Ecol. 2001, 10:53-63.
    • (2001) Mol. Ecol. , vol.10 , pp. 53-63
    • Walker, C.W.1    Vilà, C.2    Landa, A.3    Lindén, M.4    Ellegren, H.5
  • 125
    • 38949213680 scopus 로고    scopus 로고
    • Topology-Bayes versus Clade-Bayes in phylogenetic analysis
    • Wheeler WC, Pickett KM. Topology-Bayes versus Clade-Bayes in phylogenetic analysis. Mol. Biol. Evol. 2008, 25:447-453.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 447-453
    • Wheeler, W.C.1    Pickett, K.M.2
  • 126
    • 0032225748 scopus 로고    scopus 로고
    • Does adding characters with missing data increase or decrease phylogenetic accuracy?
    • Wiens JJ. Does adding characters with missing data increase or decrease phylogenetic accuracy? Syst. Biol. 1998, 47:625-640.
    • (1998) Syst. Biol. , vol.47 , pp. 625-640
    • Wiens, J.J.1
  • 127
    • 0041592696 scopus 로고    scopus 로고
    • Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem?
    • Wiens JJ. Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem? J. Vertebr. Paleontol. 2003a, 23:297-310.
    • (2003) J. Vertebr. Paleontol. , vol.23 , pp. 297-310
    • Wiens, J.J.1
  • 128
    • 0042905752 scopus 로고    scopus 로고
    • Missing data, incomplete taxa, and phylogenetic accuracy
    • Wiens JJ. Missing data, incomplete taxa, and phylogenetic accuracy. Syst. Biol. 2003b, 52:528-538.
    • (2003) Syst. Biol. , vol.52 , pp. 528-538
    • Wiens, J.J.1
  • 129
    • 30344464074 scopus 로고    scopus 로고
    • Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?
    • Wiens JJ. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Syst. Biol. 2005, 54:731-742.
    • (2005) Syst. Biol. , vol.54 , pp. 731-742
    • Wiens, J.J.1
  • 130
    • 31344471014 scopus 로고    scopus 로고
    • Missing data and the design of phylogenetic analyses
    • Wiens JJ. Missing data and the design of phylogenetic analyses. J. Biomed. Inform. 2006, 39:34-42.
    • (2006) J. Biomed. Inform. , vol.39 , pp. 34-42
    • Wiens, J.J.1
  • 131
    • 28644436536 scopus 로고    scopus 로고
    • Hylid frog phylogeny and sampling strategies for speciose clades
    • Wiens JJ, Fetzner JW, Parkinson CL, Reeder TW. Hylid frog phylogeny and sampling strategies for speciose clades. Syst. Biol. 2005, 54:778-807.
    • (2005) Syst. Biol. , vol.54 , pp. 778-807
    • Wiens, J.J.1    Fetzner, J.W.2    Parkinson, C.L.3    Reeder, T.W.4
  • 132
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • Wilcox TP, Zwickl DJ, Heath TA, Hillis DM. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 2002, 25:361-371.
    • (2002) Mol. Phylogenet. Evol. , vol.25 , pp. 361-371
    • Wilcox, T.P.1    Zwickl, D.J.2    Heath, T.A.3    Hillis, D.M.4
  • 133
    • 0027799452 scopus 로고
    • Phylogeny and classification of early European Mustelida (Mammalia: Carnivora)
    • Wolsan M. Phylogeny and classification of early European Mustelida (Mammalia: Carnivora). Acta Theriol. 1993a, 38:345-384.
    • (1993) Acta Theriol. , vol.38 , pp. 345-384
    • Wolsan, M.1
  • 135
    • 0033150682 scopus 로고    scopus 로고
    • Oldest mephitine cranium and its implications for the origin of skunks
    • Wolsan M. Oldest mephitine cranium and its implications for the origin of skunks. Acta Palaeontol. Pol. 1999, 44:223-230.
    • (1999) Acta Palaeontol. Pol. , vol.44 , pp. 223-230
    • Wolsan, M.1
  • 136
    • 51549097129 scopus 로고    scopus 로고
    • Fossil-based minimum divergence dates for the major clades of musteloid carnivorans
    • In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo,
    • Wolsan M. Fossil-based minimum divergence dates for the major clades of musteloid carnivorans. 2005, 372-373. In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo, pp
    • (2005) , pp. 372-373
    • Wolsan, M.1
  • 138
    • 77951179727 scopus 로고    scopus 로고
    • Evolutionary history of the marten-wolverine clade
    • In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo
    • Wolsan M, Sato JJ. Evolutionary history of the marten-wolverine clade. 2005, In: Abstracts of Plenary, Symposium, Poster and Oral Papers Presented at Ninth International Mammalogical Congress (IMC 9): Roles of Mammalogy on Coexistence of Wild Mammals and Human, July 31-August 5, 2005, Sapporo, Hokkaido, Japan, Science Council of Japan, Tokyo, p
    • (2005)
    • Wolsan, M.1    Sato, J.J.2
  • 139
    • 77951199094 scopus 로고    scopus 로고
    • Pinniped and red panda affinities elucidated using exon nucleotide sequences of five nuclear genes
    • Wolsan M, Sato JJ. Pinniped and red panda affinities elucidated using exon nucleotide sequences of five nuclear genes. J. Vertebr. Paleontol. 2007a, 27(3, Suppl.).
    • (2007) J. Vertebr. Paleontol. , vol.27 , Issue.3 SUPPL.
    • Wolsan, M.1    Sato, J.J.2
  • 140
    • 77951186867 scopus 로고    scopus 로고
    • The origin and early diversification of the marten-wolverine clade Guloninae
    • In: Ecosystem Evolution of Baikalian Region and Adjacent Areas in Context of Global Change: Past, Present, Future, Abstracts of the International Symposium, September 10-16, 2007, Irkutsk, Bolshie Koty (Lake Baikal), Russia, Irkutsk State Univ. Press, Irkutsk, p
    • Wolsan M, Sato JJ. The origin and early diversification of the marten-wolverine clade Guloninae. 2007b, In: Ecosystem Evolution of Baikalian Region and Adjacent Areas in Context of Global Change: Past, Present, Future, Abstracts of the International Symposium, September 10-16, 2007, Irkutsk, Bolshie Koty (Lake Baikal), Russia, Irkutsk State Univ. Press, Irkutsk, p
    • (2007)
    • Wolsan, M.1    Sato, J.J.2
  • 141
    • 57649141331 scopus 로고    scopus 로고
    • Order Carnivora
    • Wilson DE, Reeder DM. Eds, 3rd edn, Johns Hopkins Univ. Press, Baltimore, MD
    • Wozencraft WC. Order Carnivora. Mammal Species of the World: A Taxonomic and Geographic Reference 2005, 532-628. Wilson DEReeder DM. In, Eds, 3rd edn, Volume 1, Johns Hopkins Univ. Press, Baltimore, MD, pp
    • (2005) Mammal Species of the World: A Taxonomic and Geographic Reference , vol.1 , pp. 532-628
    • Wozencraft, W.C.1
  • 142
    • 0002490378 scopus 로고
    • A phylogenetic analysis and definition of the Carnivora
    • Szalay FS, Novacek MJ, McKenna MC. Eds, Springer Verlag, New York, pp
    • Wyss AR, Flynn JJ. A phylogenetic analysis and definition of the Carnivora. Mammal Phylogeny: Placentals 1993, 32-52. Szalay FS, Novacek MJMcKenna MC. In, Eds, Springer Verlag, New York, pp
    • (1993) Mammal Phylogeny: Placentals , pp. 32-52
    • Wyss, A.R.1    Flynn, J.J.2
  • 143
    • 22844452772 scopus 로고    scopus 로고
    • Branch-length prior influences Bayesian posterior probability of phylogeny
    • Yang Z, Rannala B. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst. Biol. 2005, 54:455-470.
    • (2005) Syst. Biol. , vol.54 , pp. 455-470
    • Yang, Z.1    Rannala, B.2
  • 144
  • 145
    • 26944497180 scopus 로고    scopus 로고
    • Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals
    • Yu L, Zhang Y. Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals. Mammal. Genome 2005, 16:651-660.
    • (2005) Mammal. Genome , vol.16 , pp. 651-660
    • Yu, L.1    Zhang, Y.2
  • 146
    • 33746172089 scopus 로고    scopus 로고
    • Phylogeny of the caniform Carnivora: evidence from multiple genes
    • Yu L, Zhang Y. Phylogeny of the caniform Carnivora: evidence from multiple genes. Genetica 2006, 127:65-79.
    • (2006) Genetica , vol.127 , pp. 65-79
    • Yu, L.1    Zhang, Y.2
  • 147
    • 7444261392 scopus 로고    scopus 로고
    • Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes
    • Yu L, Li Q, Ryder OA, Zhang Y. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Mol. Phylogenet. Evol. 2004, 33:694-705.
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 694-705
    • Yu, L.1    Li, Q.2    Ryder, O.A.3    Zhang, Y.4
  • 148
    • 51549097754 scopus 로고    scopus 로고
    • New insights into the evolution of intronic sequences of the β-fibrinogen gene and their application in reconstructing mustelid phylogeny
    • Yu L, Liu J, Luan P, Lee H, Lee M, Min M, Ryder OA, Chemnick L, Davis H, Zhang Y. New insights into the evolution of intronic sequences of the β-fibrinogen gene and their application in reconstructing mustelid phylogeny. Zool. Sci. 2008, 25:662-672.
    • (2008) Zool. Sci. , vol.25 , pp. 662-672
    • Yu, L.1    Liu, J.2    Luan, P.3    Lee, H.4    Lee, M.5    Min, M.6    Ryder, O.A.7    Chemnick, L.8    Davis, H.9    Zhang, Y.10
  • 149
    • 0027496819 scopus 로고
    • Mitochondrial DNA sequence evolution in the Arctoidea
    • Zhang Y, Ryder OA. Mitochondrial DNA sequence evolution in the Arctoidea. Proc. Natl Acad. Sci. USA 1993, 90:9557-9561.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 9557-9561
    • Zhang, Y.1    Ryder, O.A.2
  • 150
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • Zharkikh A. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 1994, 39:315-329.
    • (1994) J. Mol. Evol. , vol.39 , pp. 315-329
    • Zharkikh, A.1
  • 151
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock
    • Zharkikh A, Li W-H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 1992a, 9:1119-1147.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.-.H.2
  • 152
    • 0026484750 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock
    • Zharkikh A, Li W-H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock. J. Mol. Evol. 1992b, 35:356-366.
    • (1992) J. Mol. Evol. , vol.35 , pp. 356-366
    • Zharkikh, A.1    Li, W.-.H.2
  • 153
    • 0029261787 scopus 로고
    • Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique
    • Zharkikh A, Li W-H. Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique. Mol. Phylogenet. Evol. 1995, 4:44-63.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 44-63
    • Zharkikh, A.1    Li, W.-.H.2
  • 154
    • 0001354070 scopus 로고
    • Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies
    • Zurawski G, Clegg MT. Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Annu. Rev. Plant Physiol. 1987, 38:391-418.
    • (1987) Annu. Rev. Plant Physiol. , vol.38 , pp. 391-418
    • Zurawski, G.1    Clegg, M.T.2
  • 155
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl DJ, Hillis DM. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 2002, 51:588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2
  • 156
    • 12444337674 scopus 로고    scopus 로고
    • Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics
    • Zwickl DJ, Holder MT. Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics. Syst. Biol. 2004, 53:877-888.
    • (2004) Syst. Biol. , vol.53 , pp. 877-888
    • Zwickl, D.J.1    Holder, M.T.2


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