-
1
-
-
0035807812
-
Three retrotransposon families in the genome of Giardia lamblia: Two telomeric, one dead
-
Arkhipova, I. R., and H. G. Morrison. 2001. Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead. Proc. Natl. Acad. Sci. USA 98:14497-502.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14497-14502
-
-
Arkhipova, I.R.1
Morrison, H.G.2
-
2
-
-
0034939491
-
Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales
-
Boucher, Y., H. Huber, S. L'haridon, K. O. Stetter, and W. F. Doolittle. 2001. Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales. Mol. Biol. Evol. 18:1378-88.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1378-1388
-
-
Boucher, Y.1
Huber, H.2
L'haridon, S.3
Stetter, K.O.4
Doolittle, W.F.5
-
3
-
-
0036623259
-
Model misspecification and probabilistic tests of topology: Evidence from empirical data sets
-
Buckley, T. R. 2002. Model misspecification and probabilistic tests of topology: evidence from empirical data sets. Syst. Biol. 51:509-523.
-
(2002)
Syst. Biol.
, vol.51
, pp. 509-523
-
-
Buckley, T.R.1
-
4
-
-
0036005521
-
Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera
-
Buckley, T. R., P. Arensburger, C. Simon, and G. K. Chambers. 2002. Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera. Syst. Biol. 51:4-18.
-
(2002)
Syst. Biol.
, vol.51
, pp. 4-18
-
-
Buckley, T.R.1
Arensburger, P.2
Simon, C.3
Chambers, G.K.4
-
5
-
-
0036213207
-
The effect of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
-
Buckley, T. R., and C. W. Cunningham. 2002. The effect of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol. Biol. Evol. 19:394-405.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 394-405
-
-
Buckley, T.R.1
Cunningham, C.W.2
-
6
-
-
0036792101
-
Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
-
Delsuc, F., M. Scally, O. Madsen, M. J. Stanhope, W. W. De Jong, F. M. Catzeflis, M. S. Springer, and E. J. P. Douzery. 2002. Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Mol. Biol. Evol. 19:1656-1671.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1656-1671
-
-
Delsuc, F.1
Scally, M.2
Madsen, O.3
Stanhope, M.J.4
De Jong, W.W.5
Catzeflis, F.M.6
Springer, M.S.7
Douzery, E.J.P.8
-
7
-
-
0037331934
-
Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks
-
in press
-
Douady, C. J., M. Dosay, M. S. Shivji, and M. J. Stanhope. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Mol. Phylogenet. Evol. (in press).
-
Mol. Phylogenet. Evol.
-
-
Douady, C.J.1
Dosay, M.2
Shivji, M.S.3
Stanhope, M.J.4
-
8
-
-
0033302347
-
Molecular phylogenetics of Diseae (Orchidaceae): A contribution from nuclear ribosomal ITS sequences
-
Douzery, E. J., A. M. Pridgeon, P. Kores, H. P. Linder, H. Kurzweil, and M. W. Chase. 1999. Molecular phylogenetics of Diseae (Orchidaceae): a contribution from nuclear ribosomal ITS sequences. Am. J. Bot. 86:887-899.
-
(1999)
Am. J. Bot.
, vol.86
, pp. 887-899
-
-
Douzery, E.J.1
Pridgeon, A.M.2
Kores, P.3
Linder, H.P.4
Kurzweil, H.5
Chase, M.W.6
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
-. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
-
12
-
-
0003437299
-
-
Department of Genome Sciences. University of Washington. Seattle
-
-. 2001. PHYLIP (PHYLogeny Inference Package). Version 3.6a2.1. Department of Genome Sciences. University of Washington. Seattle.
-
(2001)
PHYLIP (PHYLogeny Inference Package). Version 3.6a2.1
-
-
-
13
-
-
12044259827
-
Is there something wrong with the bootstrap on phylogenies - A reply
-
Felsenstein, J., and H. Kishino. 1993. Is there something wrong with the bootstrap on phylogenies - a reply. Syst. Biol. 42:193-200.
-
(1993)
Syst. Biol.
, vol.42
, pp. 193-200
-
-
Felsenstein, J.1
Kishino, H.2
-
14
-
-
0034351387
-
Likelihood-based tests of topologies in phylogenetics
-
Goldman, N., J. P. Anderson, and A. G. Rodrigo. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:652-670.
-
(2000)
Syst. Biol.
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
15
-
-
0035960882
-
Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus, and Trichomonas vaginalis
-
Henze, K., D. S. Homer, S. Suguri, D. V. Moore, L. B. Sanchez, M. Muller, and T. M. Embley. 2001. Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus, and Trichomonas vaginalis. Gene 281:123-131.
-
(2001)
Gene
, vol.281
, pp. 123-131
-
-
Henze, K.1
Homer, D.S.2
Suguri, S.3
Moore, D.V.4
Sanchez, L.B.5
Muller, M.6
Embley, T.M.7
-
16
-
-
12044253190
-
An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis, D. M., and J. J. Bull. 1993. An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
17
-
-
0036097894
-
Testing a covariotide model of DNA substitution
-
Huelsenbeck, J. P. 2002. Testing a covariotide model of DNA substitution. Mol. Biol. Evol. 19:698-707.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
18
-
-
0036806280
-
Potential applications and pitfalls of Bayesian inference of phylogeny
-
Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51:673-688.
-
(2002)
Syst. Biol.
, vol.51
, pp. 673-688
-
-
Huelsenbeck, J.P.1
Larget, B.2
Miller, R.E.3
Ronquist, F.4
-
19
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
20
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck, J. P., F. Ronquist, R. Nielsen, and J. P. Bollback. 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314.
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
21
-
-
0035861514
-
The closest living relatives of land plants
-
Karol, K. G., R. M. Mccourt, M. T. Cimino, and C. F. Delwiche. 2001. The closest living relatives of land plants. Science 294:2351-2353.
-
(2001)
Science
, vol.294
, pp. 2351-2353
-
-
Karol, K.G.1
Mccourt, R.M.2
Cimino, M.T.3
Delwiche, C.F.4
-
22
-
-
0019296687
-
A simple method for estimation evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimation evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Biol. 16:111-120.
-
(1980)
J. Mol. Biol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
23
-
-
0032976397
-
Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
-
Larget, B., and D. L. Simon. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16:750-759.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 750-759
-
-
Larget, B.1
Simon, D.L.2
-
24
-
-
0036005516
-
Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches
-
Leaché, A. D., and T. W. Reeder. 2002. Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51:44-68.
-
(2002)
Syst. Biol.
, vol.51
, pp. 44-68
-
-
Leaché, A.D.1
Reeder, T.W.2
-
25
-
-
0035927638
-
Major fungal lineages are derived from lichen symbiotic ancestors
-
Lutzoni,F.,M. Pagel, and V. Reeb. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411:937-940.
-
(2001)
Nature
, vol.411
, pp. 937-940
-
-
Lutzoni, F.1
Pagel, M.2
Reeb, V.3
-
26
-
-
0031504952
-
Gene trees in species trees
-
Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46:523-536.
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
27
-
-
0033144664
-
Molecular phylogeny of ateline New World monkeys (Platyrrhini, Atelinae) based on gamma-globin gene sequences: Evidence that Brachyteles is the sister group of Lagothrix
-
Meireles, C. M., J. Czelusniak, M. P. Schneider, J. A. Muniz, M. C. Brigido, H. S. Ferreira, and M. Goodman. 1999. Molecular phylogeny of ateline New World monkeys (Platyrrhini, Atelinae) based on gamma-globin gene sequences: evidence that Brachyteles is the sister group of Lagothrix. Mol. Phylogenet. Evol. 12:10-30.
-
(1999)
Mol. Phylogenet. Evol.
, vol.12
, pp. 10-30
-
-
Meireles, C.M.1
Czelusniak, J.2
Schneider, M.P.3
Muniz, J.A.4
Brigido, M.C.5
Ferreira, H.S.6
Goodman, M.7
-
28
-
-
0035861441
-
Resolution of the early placental mammal radiation using Bayesian phylogenetics
-
Murphy, W. J., E. Eizirik, S. J. O'Brien et al. (11 co-authors). 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294:2348-2352.
-
(2001)
Science
, vol.294
, pp. 2348-2352
-
-
Murphy, W.J.1
Eizirik, E.2
O'Brien, S.J.3
-
29
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-81.8
-
(1998)
Bioinformatics
, vol.14
, pp. 8817-8818
-
-
Posada, D.1
Crandall, K.A.2
-
30
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut, A., and N. C. Grassly. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
31
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
Rannala, B., and Z. Yang. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-311.
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
32
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood mehtod for reconstructing tree topologies
-
Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum-likelihood mehtod for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
34
-
-
0035752767
-
A phylogenetic foundation for comparative mammalian genomics
-
Waddell, P. J., H. Kishino, and R. Ota. 2001. A phylogenetic foundation for comparative mammalian genomics. Genome Informatics Series. 12:141-155.
-
(2001)
Genome Informatics Series
, vol.12
, pp. 141-155
-
-
Waddell, P.J.1
Kishino, H.2
Ota, R.3
-
35
-
-
0036368188
-
Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences
-
Whittingham, L. A., B. Slikas, D. W. Winkler, and F. H. Sheldon. 2002. Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences. Mol. Phylogenet. Evol. 22:430-441.
-
(2002)
Mol. Phylogenet. Evol.
, vol.22
, pp. 430-441
-
-
Whittingham, L.A.1
Slikas, B.2
Winkler, D.W.3
Sheldon, F.H.4
-
36
-
-
0036431235
-
Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
-
Wilcox, T. P., D. J. Zwickl, T. A. Heath, and D. M. Hillis. 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 25:361-371.
-
(2002)
Mol. Phylogenet. Evol.
, vol.25
, pp. 361-371
-
-
Wilcox, T.P.1
Zwickl, D.J.2
Heath, T.A.3
Hillis, D.M.4
-
37
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov Chain Monte Carlo method
-
Yang, Z., and B. Rannala. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method. Mol. Biol. Evol. 14:717-724.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
|