Novel phylogeny of the raccoon family (Procyonidae: Carnivora) based on nuclear and mitochondrial DNA evidence

Molecular Phylogenetics and Evolution

Volumn 43, Issue 3, 2007, Pages 1171-1177

  Fulton, Tara L ^a   Strobeck, Curtis ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

GROWTH HORMONE RECEPTOR; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROCYONIDAE;

ANIMALS; CELL NUCLEUS; DNA, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROCYONIDAE; RECEPTORS, SOMATOTROPIN; SEQUENCE ANALYSIS, DNA;

CARNIVORA; PROCYON; PROCYONIDAE;

EID: 34248671391     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.10.019     Document Type: Article

References (37)

1. Barker F.K., and Lutzoni F.M. The utility of the incongruence length difference test. Syst. Biol. 51 (2002) 625-637
2. Barriel V. Molecular phylogenies and how to code insertion/deletion events. Life Sci. 317 (1994) 693-701
3. Baskin J.A. Tertiary Procyoninae (Mammalia: Carnivora) of North America. J. Vertebr. Paleontol. 2 (1982) 71-93
4. Baskin J.A. Comments on New world Tertiary Procyonidae (Mammalia: Carnivora). J. Vertebr. Paleontol. 9 (1989) 110-117
5. Baskin J.A. Procyonidae. In: Janis C.M., Scott K.M., and Jacobs L.J. (Eds). Evolution of Tertiary Mammals of North America. Volume 1: Terrestrial Carnivores, Ungulates, and Ungulatelike Mammals (1998), Cambridge University Press, New York, NY 144-151
6. Baskin, J.A., 2003. New procyonines from the Hemingfordian and Barstovian of the Gulf coast and Nevada, including the first fossil record of the Potosini (Chapter 6). In: Flynn, L.J. (Ed.), Vertebrate Fossils and their Context: Contributions in Honor of Richard H. Tedford. Bull. Am. Mus. Nat. Hist., Number 279, New York, NY, pp. 125-146.
7. Baskin J.A. Bassariscus and Probassariscus (Mammalia, Carnivora, Procyonidae) from the early Barstovian (middle Miocene). J. Vertebr. Paleontol. 24 (2004) 709-720
8. Darlu P., and Lecointre G. When does the incongruence length difference test fail?. Mol. Biol. Evol. 19 (2002) 432-437
9. Decker D.M., and Wozencraft W.C. Phylogenetic analysis of recent procyonid genera. J. Mammal. 72 (1991) 42-55
10. Delisle I., and Strobeck C. Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears. Mol. Biol. Evol. 119 (2002) 357-361
11. Delisle I., and Strobeck C. A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes. Mol. Phylogenet. Evol. 37 (2005) 192-201
12. Dolphin K., Belshaw R., Orme C.D.L., and Quicke D.L.J. Noise and incongruence: interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17 (2000) 401-406
13. Douady C.J., Delsuc F., Boucher Y., Doolittle W.F., and Douzery E.J.P. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20 (2003) 248-254
14. Farris J.S., Källersjö M., Kluge A.G., and Bult C. Constructing a significance test for incongruence. Syst. Biol. 44 (1995) 570-572
15. Felsenstein J. Inferring Phylogenies (2004), Sinauer Associates, Inc., Sunderland, Massachusetts
16. Flynn J.J., Finarelli J.A., Zehr S., Hsu J., and Nedbal M.A. Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 54 (2005) 317-337
17. Flynn J.J., Nedbal M.A., Dragoo J.W., and Honeycutt R.L. Whence the red panda?. Mol. Phylogenet. Evol. 17 (2000) 190-199
18. Flynn J.J., and Wesley-Hunt G.D. Carnivora. In: Rose K.D., and Archibald J.D. (Eds). The Rise of Placental Mammals (2005), The John Hopkins University Press, Baltimore, Maryland 175-198
19. Ford L.S., and Hoffman R.S. Potos flavus. Mammal. Species 321 (1988) 1-9
20. Fulton T.L., and Strobeck C. Molecular phylogeny of the Arctoidea (Carnivora): Effect of missing data on supertree and supermatrix analyses of multiple gene data sets. Mol. Phylogenet. Evol 41 (2006) pp. 165-166-181.
21. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
22. Kays R.W. The behavior and ecology of olingos (Bassaricyon gabbii) and their competition with kinkajous (Potos flavus) in central Panama. Mammalia 64 (2000) 1-9
23. Koepfli K.-P., and Wayne R.K. Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Syst. Biol. 52 (2003) 571-593
24. Lockhart P.J., Steel M.A., Hendy M.D., and Penny D. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11 (1994) 605-612
25. Nowak R.M. Walker's Mammals of the World. Fifth ed. (1991), The John Hopkins University Press, Baltimore
26. Poglayen-Neuwall I., and Toweill D.E. Bassariscus astutus. Mammal. Species 327 (1988) 1-8
27. Posada D., and Crandall K.A. ModelTest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
28. Ronquist F., and Huelsenbeck J.P. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
29. Salesa M.J., Anton M., Peigne S., and Morales J. Evidence of a false thumb in a fossil carnivore clarifies the evolution of pandas. Proc. Natl. Acad. Sci. USA 103 (2006) 379-382
30. Sato J.J., Hosoda T., Wolsan M., Tsuchiya K., Yamamoto M., and Suzuki H. Phylogenetic relationships and divergence times among Mustelids (Mammalia: Carnivora) based on nucleotide sequences of the Nuclear Interphotoreceptor Retinoid Binding Protein and mitochondrial cytochrome b genes. Zool. Sci. 20 (2003) 243-264
31. Sato J.J., Wolsan M., Suzuki H., Hosoda T., Yamaguchi Y., Hiyama K., Kobayashi M., and Minami S. Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of pinnipedia: single origin with affinity to musteloidea. Zool. Sci. 23 (2006) 125-146
32. Simpson G.G. The principles of classification and a classification of mammals. Bull. Am. Mus. Nat. Hist. 85 (1945) 1-350
33. Stanhope M.J., Czelusniak J., Si J.S., Nickerson J., and Goodman M. A molecular perspective on mammalian evolution from the gene encoding Interphotoreceptor Binding Protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1 (1992) 148-160
34. Sullivan J., Abdo Z., Joyce P., and Swofford D.L. Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation. Mol. Biol. Evol. 22 (2005) 1386-1392
35. Swofford, D.L., 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). version 4. Sinauer Associates, Sunderland, Massachusetts.
36. Wolsan M. Phylogeny and classification of early European Mustelida (Mammalia, Carnivora). Acta Theriol. 38 (1993) 345-384
37. Wolsan M., and Lange-Badre B. An arctomorph carnivoran skull from the Phosphorites du Quercy and the origin of procyonids. Acta Palaeontol. Polon. 41 (1996) 277-298