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Volumn 78, Issue 4, 2010, Pages 1015-1025

Highly conserved glycine 86 and arginine 87 residues contribute differently to the structure and activity of the mature HIV-1 protease

Author keywords

AIDS; Crystal; HIV 1; NMR; Protease; Retrovirus; X ray

Indexed keywords

ALANINE; ARGININE; GLYCINE; PROTEINASE; SERINE; P16 PROTEASE, HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 77949314924     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22625     Document Type: Article
Times cited : (19)

References (41)
  • 2
  • 3
    • 18744427313 scopus 로고    scopus 로고
    • Database of three-dimensional structures of HIV proteinases
    • Vondrasek J, Buskirk CP, Wlodawer A. Database of three-dimensional structures of HIV proteinases. Nat Struct Biol 1997; 4:8.
    • (1997) Nat Struct Biol , vol.4 , pp. 8
    • Vondrasek, J.1    Buskirk, C.P.2    Wlodawer, A.3
  • 4
    • 0036804362 scopus 로고    scopus 로고
    • The genesis of high-throughput structure-based drug discovery using protein crystallography
    • DOI 10.1016/S1367-5931(02)00361-7
    • Kuhn P, Wilson K, Patch MG, Stevens RC. The genesis of highthroughput structure-based drug discovery using protein crystallography. Curr Opin Chem Biol 2002; 6: 704-710. (Pubitemid 35284204)
    • (2002) Current Opinion in Chemical Biology , vol.6 , Issue.5 , pp. 704-710
    • Kuhn, P.1    Wilson, K.2    Patch, M.G.3    Stevens, R.C.4
  • 5
    • 0031856659 scopus 로고    scopus 로고
    • Resistance to HIV protease inhibitors
    • Condra JH. Resistance to HIV protease inhibitors. Hemophilia 1998; 4: 610-615.
    • (1998) Hemophilia , vol.4 , pp. 610-615
    • Condra, J.H.1
  • 6
    • 0035370444 scopus 로고    scopus 로고
    • Structural implications of drug-resistant mutants of HIV-1 protease: High-resolution crystal structures of the mutant protease/substrate analogue complexes
    • DOI 10.1002/prot.1057
    • Mahalingam B, Louis JM, Hung J, Harrison RW, Weber IT. Structural implications of drug-resistant mutants of HIV-1 protease: high-resolution crystal structures of the mutant protease/substrate analoge complexes. Proteins 2001; 43: 455-464. (Pubitemid 32476440)
    • (2001) Proteins: Structure, Function and Genetics , vol.43 , Issue.4 , pp. 455-464
    • Mahalingam, B.1    Louis, J.M.2    Hung, J.3    Harrison, R.W.4    Weber, I.T.5
  • 7
    • 0034283345 scopus 로고    scopus 로고
    • How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease
    • Prabu-Jeyabalan M, Nalivaika E, Schiffer CA. How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease. J Mol Biol 2000; 301: 1207-1220.
    • (2000) J Mol Biol , vol.301 , pp. 1207-1220
    • Prabu-Jeyabalan, M.1    Nalivaika, E.2    Schiffer, C.A.3
  • 8
    • 27144554995 scopus 로고    scopus 로고
    • Molecular basis for substrate recognition and drug resistance from 1.1 to to 1.6 angstroms resolution crystal structures of HIV-1 protease mutants with substrate analogs
    • Tie Y, Boross PI, Wang YF, Gaddis L, Liu F, Chen X, Tozser J, Harrison RW, Weber IT. Molecular basis for substrate recognition and drug resistance from 1.1 to to 1.6 angstroms resolution crystal structures of HIV-1 protease mutants with substrate analogs. FEBS J 2005; 272: 5265-5277.
    • (2005) FEBS J , vol.272 , pp. 5265-5277
    • Tie, Y.1    Boross, P.I.2    Wang, Y.F.3    Gaddis, L.4    Liu, F.5    Chen, X.6    Tozser, J.7    Harrison, R.W.8    Weber, I.T.9
  • 9
    • 19644392743 scopus 로고    scopus 로고
    • Application of InChI to curate, index, and query 3-D structures
    • Prasanna MD, Vondrasek J, Wlodawer A, Bhat TN. Application of InChI to curate, index, and query 3-D structures. Proteins 2005; 60: 1-4.
    • (2005) Proteins , vol.60 , pp. 1-4
    • Prasanna, M.D.1    Vondrasek, J.2    Wlodawer, A.3    Bhat, T.N.4
  • 10
    • 22544467240 scopus 로고    scopus 로고
    • Observation of a tetrahedral reaction intermediate in the HIV-1 protease-substrate complex
    • DOI 10.1042/BJ20041804
    • Kumar M, Prashar V, Mahale S, Hosur MV. Observation of a tetrahedral reaction intermediate in the HIV-1 protease-substrate complex. Biochem J 2005; 389: 365-371. (Pubitemid 41021139)
    • (2005) Biochemical Journal , vol.389 , Issue.2 , pp. 365-371
    • Kumar, M.1    Prashar, V.2    Mahale, S.3    Hosur, M.V.4
  • 11
    • 37349128225 scopus 로고    scopus 로고
    • Caught in the Act: 1.5 Å resolution crystal structures of the HIV-1 protease and the I54V mutant reveal a tetrahedral reaction intermediate
    • Kovalevsky AY, Chumanevich AA, Liu F, Louis JM, Weber IT. Caught in the Act: 1.5 Å resolution crystal structures of the HIV-1 protease and the I54V mutant reveal a tetrahedral reaction intermediate. Biochemistry 2007; 46: 14854-14864.
    • (2007) Biochemistry , vol.46 , pp. 14854-14864
    • Kovalevsky, A.Y.1    Chumanevich, A.A.2    Liu, F.3    Louis, J.M.4    Weber, I.T.5
  • 12
    • 0037047028 scopus 로고    scopus 로고
    • Amplification of the effects of drug resistance mutations by background polymorphisms in HIV-1 protease from African subtypes
    • Velazquez-Campoy A, Vega S, Freire E. Amplification of the effects of drug resistance mutations by background polymorphisms in HIV-1 protease from African subtypes. Biochemistry 2002;41:86138619.
    • (2002) Biochemistry , vol.41 , pp. 86138619
    • Velazquez-Campoy, A.1    Vega, S.2    Freire, E.3
  • 13
    • 9644257332 scopus 로고    scopus 로고
    • Adaptive inhibitors of the HIV-1 protease
    • Ohtaka H, Freire E. Adaptive inhibitors of the HIV-1 protease. Prog Biophys Mol Biol 2005; 88: 193-208.
    • (2005) Prog Biophys Mol Biol , vol.88 , pp. 193-208
    • Ohtaka, H.1    Freire, E.2
  • 14
    • 0023189868 scopus 로고
    • A structural model for the retroviral proteases
    • Pearl LH, Taylor WR. A structural model for the retroviral proteases. Nature 1987; 329: 351-354.
    • (1987) Nature , vol.329 , pp. 351-354
    • Pearl, L.H.1    Taylor, W.R.2
  • 15
    • 0025815916 scopus 로고
    • Stuctural and evolutionary relationships between retroviral an eucaryotic aspartic proteinases
    • Rao JKM, Erickson JW, Wlodawer A. Stuctural and evolutionary relationships between retroviral an eucaryotic aspartic proteinases. Biochemistry 1991; 30: 4663-4671.
    • (1991) Biochemistry , vol.30 , pp. 4663-4671
    • Rao, J.K.M.1    Erickson, J.W.2    Wlodawer, A.3
  • 17
    • 0030910583 scopus 로고    scopus 로고
    • Sequence requirements of the HIV-1 protease flap region determined by saturation mutagenesis and kinetic analysis of flap mutants
    • Shao W, Everitt L, Manchester M, Loeb DD, Hutchison CA, III, wanstrom R. Sequence requirements of the HIV-1 protease flap region determined by saturation mutagenesis and kinetic analysis of flap mutants. Proc Natl Acad Sci USA 1997; 94: 2243-2248.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 2243-2248
    • Shao, W.1    Everitt, L.2    Manchester, M.3    Loeb, D.D.4    Hutchison III, C.A.5    Wanstrom, R.6
  • 20
    • 0030669385 scopus 로고    scopus 로고
    • Crystallographic analysis of human immunodeficiency virus 1 protease with an analog of the conserved CA-p2 substrate-interactions with frequently occurring glutamic acid residue at P2″ position of substrates
    • Weber IT, Wu J, Adomat J, Harrison RW, Kimmel AR, Wondrak EM, Louis JM. Crystallographic analysis of human immunodeficiency virus 1 protease with an analog of the conserved CA-p2 substrate-interactions with frequently occurring glutamic acid residue at P2″ position of substrates. Eur J Biochem 1997;249:523530.
    • (1997) Eur J Biochem , vol.249 , pp. 523530
    • Weber, I.T.1    Wu, J.2    Adomat, J.3    Harrison, R.W.4    Kimmel, A.R.5    Wondrak, E.M.6    Louis, J.M.7
  • 21
    • 0025336093 scopus 로고
    • Comparison of the crystal structures and intersubunit interactions of human immunodeficiency and rous sarcoma virus proteases
    • Weber IT. Comparison of the crystal structures and intersubunit interactions of human immunodeficiency and Rous sarcoma virus proteases. J Biol Chem 1990; 265: 10492-10496. (Pubitemid 120001007)
    • (1990) Journal of Biological Chemistry , vol.265 , Issue.18 , pp. 10492-10496
    • Weber, I.T.1
  • 22
    • 34447133502 scopus 로고    scopus 로고
    • Mutational and structural studies aimed at characterizing the monomer of HIV-1 protease and its precursor
    • Ishima R, Torchia DA, Louis JM. Mutational and structural studies aimed at characterizing the monomer of HIV-1 protease and its precursor. J Biol Chem 2007; 282: 17190-17199.
    • (2007) J Biol Chem , vol.282 , pp. 17190-17199
    • Ishima, R.1    Torchia, D.A.2    Louis, J.M.3
  • 24
    • 0035910284 scopus 로고    scopus 로고
    • Characterization of two hydrophobic methyl clusters in HIV-1 protease by NMR spin relaxation in solution
    • Ishima R, Louis JM, Torchia DA. Characterization of two hydrophobic methyl clusters in HIV-1 protease by NMR spin relaxation in solution. J Mol Biol 2001; 305: 515-521.
    • (2001) J Mol Biol , vol.305 , pp. 515-521
    • Ishima, R.1    Louis, J.M.2    Torchia, D.A.3
  • 25
    • 39749086224 scopus 로고    scopus 로고
    • A diverse view of protein dynamics from NMR studies of HIV-1 protease flaps
    • Ishima R, Louis JM. A diverse view of protein dynamics from NMR studies of HIV-1 protease flaps. Proteins 2008; 70: 1408-1415.
    • (2008) Proteins , vol.70 , pp. 1408-1415
    • Ishima, R.1    Louis, J.M.2
  • 28
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:306-326. (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 29
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza J. AMoRe: an automated package for molecular replacement. Acta Cryst 1994;A50:157-163.
    • (1994) Acta Cryst , vol.A50 , pp. 157-163
    • Navaza, J.1
  • 31
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 1991;47:110-119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 32
    • 45149083375 scopus 로고    scopus 로고
    • Effect of the active site D25N mutation on the structure, stability, and ligand binding of the mature HIV-1 protease
    • Sayer JM, Liu F, Ishima R, Weber IT, Louis JM. Effect of the active site D25N mutation on the structure, stability, and ligand binding of the mature HIV-1 protease. J Biol Chem 2008; 283: 13459-13470.
    • (2008) J Biol Chem , vol.283 , pp. 13459-13470
    • Sayer, J.M.1    Liu, F.2    Ishima, R.3    Weber, I.T.4    Louis, J.M.5
  • 33
    • 0036147844 scopus 로고    scopus 로고
    • Rapid structural fluctuations of the free HIV protease flaps in solution: Relationship to crystal structures and comparison with predictions of dynamics calculations
    • Freedberg DI, Ishima R, Jacob J, Wang YX, Kustanovich I, Louis JM, Torchia DA. Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations. Protein Sci 2002; 11: 221-232.
    • (2002) Protein Sci , vol.11 , pp. 221-232
    • Freedberg, D.I.1    Ishima, R.2    Jacob, J.3    Wang, Y.X.4    Kustanovich, I.5    Louis, J.M.6    Torchia, D.A.7
  • 34
    • 0037634016 scopus 로고    scopus 로고
    • A solution NMR study of the binding kinetics and the internal dynamics of an HIV-1 protease-substrate complex
    • Katoh E, Louis JM, Yamazaki T, Gronenborn AM, Torchia DA, Ishima R. A solution NMR study of the binding kinetics and the internal dynamics of an HIV-1 protease-substrate complex. Protein Sci 2003;12:1376-1385.
    • (2003) Protein Sci , vol.12 , pp. 1376-1385
    • Katoh, E.1    Louis, J.M.2    Yamazaki, T.3    Gronenborn, A.M.4    Torchia, D.A.5    Ishima, R.6
  • 35
    • 0242353303 scopus 로고    scopus 로고
    • Solution structure of the mature HIV-1 protease monomer: Insight into the tertiary fold and stability of a precursor
    • Ishima R, Torchia DA, Lynch SM, Gronenborn AM, Louis JM. Solution structure of the mature HIV-1 protease monomer: insight into the tertiary fold and stability of a precursor. J Biol Chem 2003;278:43311-43319.
    • (2003) J Biol Chem , vol.278 , pp. 43311-43319
    • Ishima, R.1    Torchia, D.A.2    Lynch, S.M.3    Gronenborn, A.M.4    Louis, J.M.5
  • 37
    • 0028673594 scopus 로고
    • Chemical shifts as a tool for structure determination
    • Wishart DS, Sykes BD. Chemical shifts as a tool for structure determination. Methods Enzymol 1994;239:363-392.
    • (1994) Methods Enzymol , vol.239 , pp. 363-392
    • Wishart, D.S.1    Sykes, B.D.2
  • 38
  • 39
    • 46649092697 scopus 로고    scopus 로고
    • Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir
    • Liu F, Kovalevsky AY, Tie Y, Ghosh AK, Harrison RW, Weber IT. Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir. J Mol Biol 2008;381:102115.
    • (2008) J Mol Biol , vol.381 , pp. 102115
    • Liu, F.1    Kovalevsky, A.Y.2    Tie, Y.3    Ghosh, A.K.4    Harrison, R.W.5    Weber, I.T.6
  • 40
    • 11144354478 scopus 로고    scopus 로고
    • High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multi-drug-resistant clinical strains
    • Tie Y, Boross PI, Wang YF, Gaddis L, Hussain AK, Leshchenko S, Ghosh AK, Louis JM, Harrison RW, Weber IT. High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multi-drug-resistant clinical strains. J Mol Biol 2004;338:341-352.
    • (2004) J Mol Biol , vol.338 , pp. 341-352
    • Tie, Y.1    Boross, P.I.2    Wang, Y.F.3    Gaddis, L.4    Hussain, A.K.5    Leshchenko, S.6    Ghosh, A.K.7    Louis, J.M.8    Harrison, R.W.9    Weber, I.T.10
  • 41
    • 0036298514 scopus 로고    scopus 로고
    • Relation between sequence and structure of HIV-1 protease inhibitor complexes: A model system for the analysis of protein Flexibility
    • DOI 10.1006/jmbi.2001.5173
    • Zoete V, Michielin O, Karplus M. Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility. J Mol Biol 2002;315:21-52. (Pubitemid 34722109)
    • (2002) Journal of Molecular Biology , vol.315 , Issue.1 , pp. 21-52
    • Zoete, V.1    Michielin, O.2    Karplus, M.3


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