Rescue of arrested RNA polymerase II complexes

Journal of Cell Science

Volumn 116, Issue 3, 2003, Pages 447-451

  Svejstrup, Jesper Q ^a  

^a IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

Author keywords

Cockayne syndrome; Def1; RNA polymerase II; Swi Snf; Transcript elongation; Transcription coupled repair; Ubiquitylation

Indexed keywords

CARRIER PROTEIN; RNA POLYMERASE II;

COUPLING FACTOR; DNA DAMAGE; DNA PROTEIN COMPLEX; DNA REPAIR; ENZYME ACTIVITY; EUKARYOTIC CELL; GENETIC TRANSCRIPTION; HYPOTHESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; REVIEW;

ANIMALS; DNA; DNA HELICASES; DNA REPAIR; DNA REPAIR ENZYMES; EUKARYOTIC CELLS; HUMANS; RNA POLYMERASE II; TRANSCRIPTION, GENETIC; UBIQUITIN;

EUKARYOTA;

EID: 0037326318     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.00271     Document Type: Review

References (52)

1. Balajee, A. S. and Bohr, V. A. (2000). Genomic heterogeneity of nucleotide excision repair. Gene 250, 15-30.
2. Beaudenon, S. L., Huacani, M. R., Wang, G., McDonnell, D. P. and Huibregtse, J. M. (1999). Rsp5 ubiquitin-protein ligase mediates DNA damage-induced degradation of the large subunit of RNA polymerase II in Saccharomyces cerevisiae. Mol. Cell. Biol. 19, 6972-6979.
3. Bohr, V. A., Smith, C. A., Okumoto, D. S. and Hanawalt, P. C. (1985). DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40, 359-369.
4. Bregman, D. B., Halaban, R., van Gool, A. J., Henning, K. A., Friedberg, E. C. and Warren, S. L. (1996). UV-induced ubiquitination of RNA polymerase II: a novel modification deficient in Cockayne syndrome cells. Proc. Natl. Acad. Sci. USA 93, 11586-11590.
5. Cairns, B. R. (1998). Chromatin remodeling machines: similar motors, ulterior motives. Trends Biochem. Sci. 23, 20-25.
6. Christians, F. C. and Hanawalt, P. C. (1992). Inhibition of transcription and strand-specific DNA repair by alpha-amanitin in Chinese hamster ovary cells. Mutat. Res. 274, 93-101.
7. Citterio, E., van den Boom, V., Schnitzler, G., Kanaar, R., Bonte, E., Kingston, R. E., Hoeijmakers, J. H. and Vermeulen, W. (2000). ATP-dependent chromatin remodeling by the Cockayne syndrome B DNA repair-transcription-coupling factor. Mol. Cell. Biol. 20, 7643-7653.
8. Conaway, J. W. and Conaway, R. C. (1999). Transcription elongation and human disease. Annu. Rev. Biochem. 68, 301-319.
9. Conaway, J. W., Shilatifard, A., Dvir, A. and Conaway, R. C. (2000). Control of elongation by RNA polymerase II. Trends Biochem. Sci. 25, 375-380.
10. de Boer, J. and Hoeijmakers, J. H. (2000). Nucleotide excision repair and human syndromes. Carcinogenesis 21, 453-460.
11. Eisen, J. A., Sweder, K. S. and Hanawalt, P. C. (1995). Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23, 2715-2723.
12. Feaver, W. J., Svejstrup, J. Q., Bardwell, L., Bardwell, A. J., Buratowski, S., Gulyas, K. D., Donahue, T. F., Friedberg, E. C. and Kornberg, R. D. (1993). Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair. Cell 75, 1379-1387.
13. Ferdous, A., Gonzalez, F., Sun, L., Kodadek, T. and Johnston, S. A. (2001). The 19S regulatory particle of the proteasome is required for efficient transcription elongation by RNA polymerase II. Mol. Cell 7, 981-991.
14. Gillette, T. G., Huang, W., Russell, S. J., Reed, S. H., Johnston, S. A. and Friedberg, E. C. (2001). The 19S complex of the proteasome regulates nucleotide excision repair in yeast. Genes Dev. 15, 1528-1539.
15. Guzder, S. N., Habraken, Y., Sung, P., Prakash, L. and Prakash, S. (1996). RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase. J. Biol. Chem. 271, 18314-18317.
16. Jansen, L. E., den Dulk, H., Brouns, R. M., de Ruijter, M., Brandsma, J. A. and Brouwer, J. (2000). Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair. EMBO J. 19, 6498-6507.
17. Langst, G. and Becker, P. B. (2001). Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors. J. Cell Sci. 114, 2561-2568.
18. Lee, S. K., Yu, S. L., Prakash, L. and Prakash, S. (2001). Requirement for yeast RAD26, a homolog of the human CSB gene, in elongation by RNA polymerase II. Mol. Cell. Biol. 21, 8651-8656.
19. Lee, K. B., Wang, D., Lippard, S. J. and Sharp, P. A. (2002a). Transcription-coupled and DNA damage-dependent ubiquitination of RNA polymerase II in vitro. Proc. Natl. Acad. Sci. USA 99, 4239-4244.
20. Lee, S.-K., Yu, S.-L., Prakash, L. and Prakash, S. (2002b). Requirement of yeast RAD2, a homolog of human XPG gene, for efficient RNA polymerase II transcription: implications for Cockayne syndrome. Cell 109, 823-834.
21. Lee, S. K., Yu, S. L., Prakash, L. and Prakash, S. (2002c). Yeast RAD26, a homolog of the human CSB gene, functions independently of nucleotide excision repair and base excision repair in promoting transcription through damaged bases. Mol. Cell. Biol. 22, 4383-4389.
22. Lehmann, A. R. (2001). The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseases. Genes Dev. 15, 15-23.
23. Lommel, L., Bucheli, M. E. and Sweder, K. S. (2000). Transcription-coupled repair in yeast is independent from ubiquitylation of RNA pol II: implications for Cockayne's syndrome. Proc. Natl. Acad. Sci. USA 97, 9088-9092.
24. Luo, Z., Zheng, J., Lu, Y. and Bregman, D. B. (2001). Ultraviolet radiation alters the phosphorylation of RNA polymerase II large subunit and accelerates its proteasome-dependent degradation. Mutat. Res. 486, 259-274.
25. McKay, B. C., Chen, F., Clarke, S. T., Wiggin, H. E., Harley, L. M. and Ljungman, M. (2001). UV light-induced degradation of RNA polymerase II is dependent on the Cockayne's syndrome A and B proteins but not p53 or MLH1. Mutat. Res. 485, 93-105.
26. Mellon, I., Bohr, V. A., Smith, C. A. and Hanawalt, P. C. (1986). Preferential DNA repair of an active gene in human cells. Proc. Natl. Acad. Sci. USA 83, 8878-8882.
27. Mellon, I., Spivak, G. and Hanawalt, P. C. (1987). Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51, 241-249.
28. Nguyen, V. T., Giannoni, F., Dubois, M. F., Seo, S. J., Vigneron, M., Kedinger, C. and Bensaude, O. (1996). In vivo degradation of RNA polymerase II largest subunit triggered by alpha-amanitin. Nucleic Acids Res. 24, 2924-2929.
29. Park, J. S., Marr, M. T. and Roberts, J. W. (2002). E. coli transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation. Cell 109, 757-767.
30. Ratner, J. N., Balasubramanian, B., Corden, J., Warren, S. L. and Bregman, D. B. (1998). Ultraviolet radiation-induced ubiquitination and proteasomal degradation of the large subunit of RNA polymerase II. Implications for transcription-coupled DNA repair. J. Biol. Chem. 273, 5184-5189.
31. Russell, S. J., Reed, S. H., Huang, W., Friedberg, E. C. and Johnston, S. A. (1999). The 19S regulatory complex of the proteasome functions independently of proteolysis in nucleotide excision repair. Mol. Cell 3, 687-695.
32. Saha, A., Wittmeyer, J. and Cairns, B. R. (2002). Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev. 16, 2120-2134.
33. Schaeffer, L., Roy, R., Humbert, S., Moncollin, V., Vermeulen, W., Hoeijmakers, J. H., Chambon, P. and Egly, J. M. (1993). DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. Science 260, 58-63.
34. Selby, C. P. and Sancar, A. (1993). Molecular mechanism of transcription-repair coupling. Science 260, 53-58.
35. Selby, C. P. and Sancar, A. (1997a). Cockayne syndrome group B protein enhances elongation by RNA polymerase II. Proc. Natl. Acad. Sci. USA 94, 11205-11209.
36. Selby, C. P. and Sancar, A. (1997b). Human transcription-repair coupling factor CSB/ERCC6 is a DNA- stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II. J. Biol. Chem. 272, 1885-1890.
37. Svejstrup, J. Q. (2002a). Chromatin elongation factors. Curr. Opin. Genet. Dev. 12, 156-161.
38. Svejstrup, J. Q. (2002b). Mechanisms of transcription-coupled DNA repair. Nat. Rev. Mol. Cell Biol. 3, 21-29.
39. Sweder, K. S. and Hanawalt, P. C. (1992). Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad. Sci. USA 89, 10696-10700.
40. Tantin, D. (1998). RNA polymerase II elongation complexes containing the Cockayne syndrome group B protein interact with a molecular complex containing the transcription factor IIH components xeroderma pigmentosum B and p62. J. Biol. Chem. 273, 27794-27799.
41. Tantin, D., Kansal, A. and Carey, M. (1997). Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes. Mol. Cell. Biol. 17, 6803-6814.
42. Teng, Y. and Waters, R. (2000). Excision repair at the level of the nucleotide in the upstream control region, the coding sequence and in the region where transcription terminates of the Saccharomyces cerevisiae MFA2 gene and the role of RAD26. Nucleic Acids Res. 28, 1114-1119.
43. Tijsterman, M. and Brouwer, J. (1999). Rad26, the yeast homolog of the cockayne syndrome B gene product, counteracts inhibition of DNA repair due to RNA polymerase II transcription. J. Biol. Chem. 274, 1199-1202.
44. Tijsterman, M., Tasseron-de Jong, J. G., van de Putte, P. and Brouwer, J. (1996). Transcription-coupled and global genome repair in the Saccharomyces cerevisiae RPB2 gene at nucleotide resolution. Nucleic Acids Res. 24, 3499-3506.
45. Tijsterman, M., Verhage, R. A., van de Putte, P., Tasseron-de Jong, J. G. and Brouwer, J. (1997). Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94, 8027-8032.
46. Tijsterman, M., de Pril, R., Tasseron-de Jong, J. G. and Brouwer, J. (1999). RNA polymerase II transcription suppresses nucleosomal modulation of UV- induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast. Mol. Cell. Biol. 19, 934-940.
47. Tu, Y., Tornaletti, S. and Pfeifer, G. P. (1996). DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site. EMBO J. 15, 675-683.
48. Tu, Y., Bates, S. and Pfeifer, G. P. (1997). Sequence-specific and domain-specific DNA repair in xeroderma pigmentosum and Cockayne syndrome cells. J. Biol. Chem. 272, 20747-20755.
49. Tu, Y., Bates, S. and Pfeifer, G. P. (1998). The transcription-repair coupling factor CSA is required for efficient repair only during the elongation stages of RNA polymerase II transcription. Mutat. Res. 400, 143-151.
50. van Gool, A. J., Citterio, E., Rademakers, S., van Os, R., Vermeulen, W., Constantinou, A., Egly, J. M., Bootsma, D. and Hoeijmakers, J. H. (1997). The Cockayne syndrome B protein, involved in transcription-coupled DNA repair, resides in an RNA polymerase II-containing complex. EMBO J. 16, 5955-5965.
51. Wellinger, R. E. and Thoma, F. (1997). Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene. EMBO J. 16, 5046-5056.
52. Woudstra, E. C., Gilbert, C., Fellows, J., Jansen, L., Brouwer, J., Erdjument-Bromage, H., Tempst, P. and Svejstrup, J. Q. (2002). A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage. Nature 415, 929-933.