메뉴 건너뛰기




Volumn 191, Issue 17, 2009, Pages 5538-5548

Metabolic flux analysis of Escherichia coli creB and arcA mutants reveals shared control of carbon catabolism under microaerobic growth conditions

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; CARBON 13; PROTEIN ARCAB; PROTEIN CREBC; REGULATOR PROTEIN; UNCLASSIFIED DRUG;

EID: 68949163858     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00174-09     Document Type: Article
Times cited : (42)

References (78)
  • 1
    • 0033895840 scopus 로고    scopus 로고
    • Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli
    • Alexeeva, S., B. de Kort, G. Sawers, K. J. Hellingwerf, and M. J. Teixeira de Mattos. 2000. Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli. J. Bacteriol. 182:4934-4940.
    • (2000) J. Bacteriol , vol.182 , pp. 4934-4940
    • Alexeeva, S.1    de Kort, B.2    Sawers, G.3    Hellingwerf, K.J.4    Teixeira de Mattos, M.J.5
  • 2
    • 0036177861 scopus 로고    scopus 로고
    • Quantitative assessment of oxygen availability: Perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli
    • Alexeeva, S., K. J. Hellingwerf, and M. J. Teixeira de Mattos. 2002. Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli. J. Bacteriol. 184:1402-1406.
    • (2002) J. Bacteriol , vol.184 , pp. 1402-1406
    • Alexeeva, S.1    Hellingwerf, K.J.2    Teixeira de Mattos, M.J.3
  • 3
    • 0037216801 scopus 로고    scopus 로고
    • Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions
    • Alexeeva, S., K. J. Hellingwerf, and M. J. Teixeira de Mattos. 2003. Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions. J. Bacteriol. 185:204-209.
    • (2003) J. Bacteriol , vol.185 , pp. 204-209
    • Alexeeva, S.1    Hellingwerf, K.J.2    Teixeira de Mattos, M.J.3
  • 4
    • 0022441365 scopus 로고
    • Nucleotide sequence of the phoM region of Escherichia coli: Four open reading frames may constitute an operon
    • Amemura, M., K. Makino, H. Shinagawa, and A. Nakata. 1986. Nucleotide sequence of the phoM region of Escherichia coli: four open reading frames may constitute an operon. J. Bacteriol. 168:294-302.
    • (1986) J. Bacteriol , vol.168 , pp. 294-302
    • Amemura, M.1    Makino, K.2    Shinagawa, H.3    Nakata, A.4
  • 5
    • 0035920119 scopus 로고    scopus 로고
    • Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media
    • Avison, M. B., R. E. Horton, T. R. Walsh, and P. M. Bennett. 2001. Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media. J. Biol. Chem. 276:26955-26961.
    • (2001) J. Biol. Chem , vol.276 , pp. 26955-26961
    • Avison, M.B.1    Horton, R.E.2    Walsh, T.R.3    Bennett, P.M.4
  • 6
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
    • (1976) Anal. Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 7
    • 0031036839 scopus 로고    scopus 로고
    • The ldhA gene encoding the fermentative lactate dehydrogenase of Escherichia coli
    • Bunch, P. K., F. Mat-Jan, N. A. Lee, and D. P. Clark. 1997. The ldhA gene encoding the fermentative lactate dehydrogenase of Escherichia coli. Microbiology 143:187-195.
    • (1997) Microbiology , vol.143 , pp. 187-195
    • Bunch, P.K.1    Mat-Jan, F.2    Lee, N.A.3    Clark, D.P.4
  • 8
    • 44349100490 scopus 로고    scopus 로고
    • Defining the growth conditions and promoter-proximal DNA sequences required for activation of gene expression by CreBC in Escherichia coli
    • Cariss, S. J. L., A. E. Tayler, and M. B. Avison. 2008. Defining the growth conditions and promoter-proximal DNA sequences required for activation of gene expression by CreBC in Escherichia coli. J. Bacteriol. 190:3930-3939.
    • (2008) J. Bacteriol , vol.190 , pp. 3930-3939
    • Cariss, S.J.L.1    Tayler, A.E.2    Avison, M.B.3
  • 9
    • 0024723183 scopus 로고
    • The fermentation pathways of Escherichia coli
    • Clark, D. P. 1989. The fermentation pathways of Escherichia coli. FEMS Microbiol. Rev. 5:223-234.
    • (1989) FEMS Microbiol. Rev , vol.5 , pp. 223-234
    • Clark, D.P.1
  • 10
    • 0026813814 scopus 로고
    • Contribution of the fnr and arcA gene products in coordinate regulation of cytochrome o and days oxidase (cyoABCDE and cydAB) genes in Escherichia coli
    • Cotter, P. A., and R. P. Gunsalus. 1992. Contribution of the fnr and arcA gene products in coordinate regulation of cytochrome o and days oxidase (cyoABCDE and cydAB) genes in Escherichia coli. FEMS Microbiol. Lett. 70:31-36.
    • (1992) FEMS Microbiol. Lett , vol.70 , pp. 31-36
    • Cotter, P.A.1    Gunsalus, R.P.2
  • 11
    • 0032721968 scopus 로고    scopus 로고
    • Acetate metabolism in a pta mutant of Escherichia coli W3110: Importance of maintaining acetyl coenzyme A flux for growth and survival
    • Chang, D. E., S. Shin, J. S. Rhee, and J. G. Pan. 1999. Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme A flux for growth and survival. J. Bacteriol. 181:6656-6663.
    • (1999) J. Bacteriol , vol.181 , pp. 6656-6663
    • Chang, D.E.1    Shin, S.2    Rhee, J.S.3    Pan, J.G.4
  • 12
    • 0027377702 scopus 로고
    • Alteration of growth yield by overexpression of phosphoenolpyruvate carboxylase and phosphoenolpyruvate carboxykinase in Escherichia coli
    • Chao, Y. P., and J. C. Liao. 1993. Alteration of growth yield by overexpression of phosphoenolpyruvate carboxylase and phosphoenolpyruvate carboxykinase in Escherichia coli. Appl. Environ. Microbiol. 59:4261-4265.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 4261-4265
    • Chao, Y.P.1    Liao, J.C.2
  • 13
    • 0029065955 scopus 로고
    • r cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
    • r cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158:9-14.
    • (1995) Gene , vol.158 , pp. 9-14
    • Cherepanov, P.P.1    Wackernagel, W.2
  • 14
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.1    Wanner, B.L.2
  • 15
    • 0034233268 scopus 로고    scopus 로고
    • GC-MS analysis of amino acids rapidly provides rich information for the isotopomer balancing
    • Dauner, M., and U. Sauer. 2000. GC-MS analysis of amino acids rapidly provides rich information for the isotopomer balancing. Biotechnol. Prog. 16:642-649.
    • (2000) Biotechnol. Prog , vol.16 , pp. 642-649
    • Dauner, M.1    Sauer, U.2
  • 16
    • 0031194875 scopus 로고    scopus 로고
    • Inverse flux analysis for reduction of acetate excretion in Escherichia coli
    • Delgado, J., and J. C. Liao. 1997. Inverse flux analysis for reduction of acetate excretion in Escherichia coli. Biotechnol. Prog. 13:361-367.
    • (1997) Biotechnol. Prog , vol.13 , pp. 361-367
    • Delgado, J.1    Liao, J.C.2
  • 17
    • 23344450789 scopus 로고    scopus 로고
    • Characterization of the acetate-producing pathways in Escherichia coli
    • Dittrich, C. R., G. N. Bennett, and K. Y. San. 2005. Characterization of the acetate-producing pathways in Escherichia coli. Biotechnol. Prog. 21:1062-1067.
    • (2005) Biotechnol. Prog , vol.21 , pp. 1062-1067
    • Dittrich, C.R.1    Bennett, G.N.2    San, K.Y.3
  • 18
    • 0001904522 scopus 로고
    • Assay methods for key enzymes of the glyoxylate cycle
    • Dixon, G. H., and H. L. Kornberg. 1959. Assay methods for key enzymes of the glyoxylate cycle. Biochem. J. 73:3-10.
    • (1959) Biochem. J , vol.73 , pp. 3-10
    • Dixon, G.H.1    Kornberg, H.L.2
  • 19
    • 0029165790 scopus 로고
    • Promoter 7 of the E. coli pfl operon is a major determinant in the anaerobic regulation of expression by ArcA
    • Drapal, N., and G. Sawers. 1995. Promoter 7 of the E. coli pfl operon is a major determinant in the anaerobic regulation of expression by ArcA. J. Bacteriol. 177:5338-5341.
    • (1995) J. Bacteriol , vol.177 , pp. 5338-5341
    • Drapal, N.1    Sawers, G.2
  • 20
    • 0345313627 scopus 로고    scopus 로고
    • Organization of biogenesis genes for aggregative adherence fimbria II defines a virulence gene cluster in enteroaggregative Escherichia coli
    • Elias, W. P., J. R. Czeczulin, I. R. Henderson, L. R. Trabulsi, and J. P. Nataro. 1999. Organization of biogenesis genes for aggregative adherence fimbria II defines a virulence gene cluster in enteroaggregative Escherichia coli. J. Bacteriol. 181:1779-1785.
    • (1999) J. Bacteriol , vol.181 , pp. 1779-1785
    • Elias, W.P.1    Czeczulin, J.R.2    Henderson, I.R.3    Trabulsi, L.R.4    Nataro, J.P.5
  • 22
    • 34547739032 scopus 로고    scopus 로고
    • Bacterial physiology, regulation and mutational adaptation in a chemostat environment
    • Ferenci, T. 2008. Bacterial physiology, regulation and mutational adaptation in a chemostat environment. Adv. Microb. Physiol. 53:169-229.
    • (2008) Adv. Microb. Physiol , vol.53 , pp. 169-229
    • Ferenci, T.1
  • 23
    • 0035933597 scopus 로고    scopus 로고
    • Quinones as the redox signal for the arc two-component system of bacteria
    • Georgellis, D., O. Kwon, and E. C. C. Lin. 2001. Quinones as the redox signal for the arc two-component system of bacteria. Science 292:2314-2316.
    • (2001) Science , vol.292 , pp. 2314-2316
    • Georgellis, D.1    Kwon, O.2    Lin, E.C.C.3
  • 24
    • 2442655332 scopus 로고    scopus 로고
    • Gosset, G., Z. Zhang, S. Nayyar, W. A. Cuevas, and M. H. Saier, Jr. 2004. Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli. J. Bacteriol. 186:3516-3524.
    • Gosset, G., Z. Zhang, S. Nayyar, W. A. Cuevas, and M. H. Saier, Jr. 2004. Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli. J. Bacteriol. 186:3516-3524.
  • 26
    • 0020696807 scopus 로고
    • Physiological responses to nutrient limitation
    • Harder, W., and L. Dijkhuizen. 1983. Physiological responses to nutrient limitation. Annu. Rev. Microbiol. 37:1-24.
    • (1983) Annu. Rev. Microbiol , vol.37 , pp. 1-24
    • Harder, W.1    Dijkhuizen, L.2
  • 27
    • 0026681771 scopus 로고
    • Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli
    • Hengge-Aronis, R., and D. Fischer. 1992. Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli. Mol. Microbiol. 6:1877-1886.
    • (1992) Mol. Microbiol , vol.6 , pp. 1877-1886
    • Hengge-Aronis, R.1    Fischer, D.2
  • 28
    • 0000291637 scopus 로고    scopus 로고
    • The general stress response in Escherichia coli
    • G. Storz and R. Hengge-Aronis ed, ASM Press, Washington, DC
    • Hengge-Aronis, R. 2000. The general stress response in Escherichia coli, p. 161-178. In G. Storz and R. Hengge-Aronis (ed.), Bacterial stress responses. ASM Press, Washington, DC.
    • (2000) Bacterial stress responses , pp. 161-178
    • Hengge-Aronis, R.1
  • 29
    • 14244270260 scopus 로고    scopus 로고
    • Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
    • Hua, Q., C. Yang, T. Oshima, H. Mori, and K. Shimizu. 2004. Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl. Environ. Microbiol. 70:2354-2366.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 2354-2366
    • Hua, Q.1    Yang, C.2    Oshima, T.3    Mori, H.4    Shimizu, K.5
  • 30
    • 0024121496 scopus 로고
    • arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways
    • Iuchi, S., and E. C. C. Lin. 1988. arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. USA 85:1888-1892.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 1888-1892
    • Iuchi, S.1    Lin, E.C.C.2
  • 31
    • 0025144171 scopus 로고
    • Requirement for terminal cytochromes in generation of the aerobic signal for the arc regulatory system in Escherichia coli: Study utilizing deletions and lac fusions of cyo and cyd
    • Iuchi, S., V. Chepuri, H. A. Fu, R. B. Gennis, and E. C. C. Lin. 1990. Requirement for terminal cytochromes in generation of the aerobic signal for the arc regulatory system in Escherichia coli: study utilizing deletions and lac fusions of cyo and cyd. J. Bacteriol. 172:6020-6025.
    • (1990) J. Bacteriol , vol.172 , pp. 6020-6025
    • Iuchi, S.1    Chepuri, V.2    Fu, H.A.3    Gennis, R.B.4    Lin, E.C.C.5
  • 32
    • 0019780542 scopus 로고
    • Regulation of Escherichia coli phosphoenolpyruvate carboxylase by multiple effectors in vivo. II. Kinetic studies with a reaction system containing physiological concentrations of ligands
    • Izui, K., M. Taguchi, M. Morikawa, and H. Katsuki. 1981. Regulation of Escherichia coli phosphoenolpyruvate carboxylase by multiple effectors in vivo. II. Kinetic studies with a reaction system containing physiological concentrations of ligands. J. Biochem. 90:1321-1331.
    • (1981) J. Biochem , vol.90 , pp. 1321-1331
    • Izui, K.1    Taguchi, M.2    Morikawa, M.3    Katsuki, H.4
  • 34
    • 0034123699 scopus 로고    scopus 로고
    • Phosphorelay as the sole physiological route of signal transmission by the arc two-component system of Escherichia coli
    • Kwon, O., D. Georgellis, and E. C. C. Lin. 2000. Phosphorelay as the sole physiological route of signal transmission by the arc two-component system of Escherichia coli. J. Bacteriol. 182:3858-3862.
    • (2000) J. Bacteriol , vol.182 , pp. 3858-3862
    • Kwon, O.1    Georgellis, D.2    Lin, E.C.C.3
  • 35
    • 43549095454 scopus 로고    scopus 로고
    • A physiology study of Escherichia coli overexpressing phosphoenolpyruvate carboxykinase
    • Kwon, Y. D., S. Y. Lee, and P. Kim. 2008. A physiology study of Escherichia coli overexpressing phosphoenolpyruvate carboxykinase. Biosci. Biotechnol. Biochem. 72:1138-1141.
    • (2008) Biosci. Biotechnol. Biochem , vol.72 , pp. 1138-1141
    • Kwon, Y.D.1    Lee, S.Y.2    Kim, P.3
  • 36
    • 33846885651 scopus 로고    scopus 로고
    • Living with heterogeneities in bioreactors: Understanding the effect of environmental gradients in cells
    • Lara, A. R., E. Galindo, O. T. Ramírez, and L. A. Palomares. 2006. Living with heterogeneities in bioreactors: understanding the effect of environmental gradients in cells. Mol. Biotechnol. 34:355-381.
    • (2006) Mol. Biotechnol , vol.34 , pp. 355-381
    • Lara, A.R.1    Galindo, E.2    Ramírez, O.T.3    Palomares, L.A.4
  • 37
    • 0030571222 scopus 로고    scopus 로고
    • Pathway analysis, engineering, and physiological considerations for redirecting central metabolism
    • Liao, J. C., S. Y. Hou, and Y. P. Chao. 1996. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnol. Bioeng. 52:129-140.
    • (1996) Biotechnol. Bioeng , vol.52 , pp. 129-140
    • Liao, J.C.1    Hou, S.Y.2    Chao, Y.P.3
  • 38
    • 68949128271 scopus 로고    scopus 로고
    • Lynch, A. S., and E. C. C. Lin. 1996. Responses to molecular oxygen, p. 1526-1538. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., 1. ASM Press, Washington, DC.
    • Lynch, A. S., and E. C. C. Lin. 1996. Responses to molecular oxygen, p. 1526-1538. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, DC.
  • 39
    • 14644408112 scopus 로고    scopus 로고
    • The role of isocitrate lyase and the glyoxylate cycle in Escherichia coli growing under glucose limitation
    • Maharjan, R. P., P. L. Yu, S. Seeto, and T. Ferenci. 2005. The role of isocitrate lyase and the glyoxylate cycle in Escherichia coli growing under glucose limitation. Res. Microbiol. 156:178-183.
    • (2005) Res. Microbiol , vol.156 , pp. 178-183
    • Maharjan, R.P.1    Yu, P.L.2    Seeto, S.3    Ferenci, T.4
  • 40
    • 4444236656 scopus 로고    scopus 로고
    • Identification of a quinone-sensitive redox switch in the ArcB sensor kinase
    • Malpica, R., B. Franco, C. Rodríguez, and D. Georgellis. 2004. Identification of a quinone-sensitive redox switch in the ArcB sensor kinase. Proc. Natl. Acad. Sci. USA 101:13318-13323.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13318-13323
    • Malpica, R.1    Franco, B.2    Rodríguez, C.3    Georgellis, D.4
  • 41
    • 0242386460 scopus 로고    scopus 로고
    • Identifying global regulators in transcriptional regulatory networks in bacteria
    • Martínez-Antonio, A., and J. Collado-Vives. 2003. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr. Opin. Microbiol. 6:482-489.
    • (2003) Curr. Opin. Microbiol , vol.6 , pp. 482-489
    • Martínez-Antonio, A.1    Collado-Vives, J.2
  • 42
    • 29244442583 scopus 로고    scopus 로고
    • Glucose repression of the Escherichia coli sdhCDAB operon revisited: Regulation by the CRP-cAMP complex
    • Nam, T. W., Y. H. Park, H. J. Jeong, S. Ryu, and Y. J. Seok. 2005. Glucose repression of the Escherichia coli sdhCDAB operon revisited: regulation by the CRP-cAMP complex. Nucleic Acids Res. 33:6712-6722.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6712-6722
    • Nam, T.W.1    Park, Y.H.2    Jeong, H.J.3    Ryu, S.4    Seok, Y.J.5
  • 43
    • 41549140156 scopus 로고    scopus 로고
    • Cyclic AMP-dependent catabolite repression is the dominant control mechanism of metabolic fluxes under glucose limitation in Escherichia coli
    • Nanchen, A., A. Schicker, O. Revelles, and U. Sauer. 2008. Cyclic AMP-dependent catabolite repression is the dominant control mechanism of metabolic fluxes under glucose limitation in Escherichia coli. J. Bacteriol. 190:2323-2330.
    • (2008) J. Bacteriol , vol.190 , pp. 2323-2330
    • Nanchen, A.1    Schicker, A.2    Revelles, O.3    Sauer, U.4
  • 45
    • 0028234206 scopus 로고
    • The energetics of bacterial growth: A reassessment
    • Neijssel, O. M., and M. J. Teixeira de Mattos. 1994. The energetics of bacterial growth: a reassessment. Mol. Microbiol. 13:179-182.
    • (1994) Mol. Microbiol , vol.13 , pp. 179-182
    • Neijssel, O.M.1    Teixeira de Mattos, M.J.2
  • 46
    • 33646104212 scopus 로고    scopus 로고
    • Poly(3-hydroxybutyrate) synthesis by recombinant Escherichia coli arcA mutants in microaerobiosis
    • Nikel, P. I., M. J. Pettinari, M. A. Galvagno, and B. S. Méndez. 2006. Poly(3-hydroxybutyrate) synthesis by recombinant Escherichia coli arcA mutants in microaerobiosis. Appl. Environ. Microbiol. 72:2614-2620.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2614-2620
    • Nikel, P.I.1    Pettinari, M.J.2    Galvagno, M.A.3    Méndez, B.S.4
  • 47
    • 42549116263 scopus 로고    scopus 로고
    • The legacy of HfrH: Mutations in the two-component system CreBC are responsible for the unusual phenotype of an Escherichia coli arcA mutant
    • Nikel, P. I., A. de Almeida, M. J. Pettinari, and B. S. Méndez. 2008. The legacy of HfrH: mutations in the two-component system CreBC are responsible for the unusual phenotype of an Escherichia coli arcA mutant. J. Bacteriol. 190:3404-3407.
    • (2008) J. Bacteriol , vol.190 , pp. 3404-3407
    • Nikel, P.I.1    de Almeida, A.2    Pettinari, M.J.3    Méndez, B.S.4
  • 48
    • 38049159079 scopus 로고    scopus 로고
    • Escherichia coli arcA mutants: Metabolic profile characterization of microaerobic cultures using glycerol as a carbon source
    • Nikel, P. I., M. J. Pettinari, M. C. Ramirez, M. A. Galvagno, and B. S. Méndez. 2008. Escherichia coli arcA mutants: metabolic profile characterization of microaerobic cultures using glycerol as a carbon source. J. Mol. Microbiol. Biotechnol. 15:48-54.
    • (2008) J. Mol. Microbiol. Biotechnol , vol.15 , pp. 48-54
    • Nikel, P.I.1    Pettinari, M.J.2    Ramirez, M.C.3    Galvagno, M.A.4    Méndez, B.S.5
  • 49
    • 0036181664 scopus 로고    scopus 로고
    • rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
    • Notley-McRobb, L., T. King, and T. Ferenci. 2002. rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J. Bacteriol. 184:806-811.
    • (2002) J. Bacteriol , vol.184 , pp. 806-811
    • Notley-McRobb, L.1    King, T.2    Ferenci, T.3
  • 51
    • 0014855890 scopus 로고
    • Correlation of in vivo and in vitro phase transitions of membrane lipids in Escherichia coli
    • Overath, P., H. U. Schairer, and W. Stoffel. 1970. Correlation of in vivo and in vitro phase transitions of membrane lipids in Escherichia coli. Proc. Natl. Acad. Sci. USA 67:606-612.
    • (1970) Proc. Natl. Acad. Sci. USA , vol.67 , pp. 606-612
    • Overath, P.1    Schairer, H.U.2    Stoffel, W.3
  • 52
    • 17644369246 scopus 로고    scopus 로고
    • Perrenoud, A., and U. Sauer. 2005. Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J. Bacteriol. 187:3171-3179.
    • Perrenoud, A., and U. Sauer. 2005. Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J. Bacteriol. 187:3171-3179.
  • 54
    • 17644381300 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K-12: Effects of oxygen availability and ArcA
    • Salmon, K. A., S. P. Hung, N. R. Steffen, R. Krupp, P. Baldi, G. W. Hatfield, and R. P. Gunsalus. 2005. Global gene expression profiling in Escherichia coli K-12: effects of oxygen availability and ArcA. J. Biol. Chem. 280:15084-15096.
    • (2005) J. Biol. Chem , vol.280 , pp. 15084-15096
    • Salmon, K.A.1    Hung, S.P.2    Steffen, N.R.3    Krupp, R.4    Baldi, P.5    Hatfield, G.W.6    Gunsalus, R.P.7
  • 55
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • Sauer, U., D. R. Lasko, J. Fiaux, M. Hochuli, R. Glaser, T. Szyperski, K. Wüthrich, and J. A. Bailey. 1999. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181:6679-6688.
    • (1999) J. Bacteriol , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wüthrich, K.7    Bailey, J.A.8
  • 56
    • 0032448106 scopus 로고    scopus 로고
    • The glycyl radical enzyme TdcE can replace pyruvate-formate lyase in glucose fermentation
    • Sawers, G., C. Heßlinger, N. Muller, and M. Kaiser. 1998. The glycyl radical enzyme TdcE can replace pyruvate-formate lyase in glucose fermentation. J. Bacteriol. 180:3509-3516.
    • (1998) J. Bacteriol , vol.180 , pp. 3509-3516
    • Sawers, G.1    Heßlinger, C.2    Muller, N.3    Kaiser, M.4
  • 59
    • 15944366483 scopus 로고    scopus 로고
    • Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses
    • Shalel-Levanon, S., K. Y. San, and G. N. Bennett. 2005. Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses. Biotechnol. Bioeng. 89:556-564.
    • (2005) Biotechnol. Bioeng , vol.89 , pp. 556-564
    • Shalel-Levanon, S.1    San, K.Y.2    Bennett, G.N.3
  • 60
    • 29044445103 scopus 로고    scopus 로고
    • Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli
    • Shalel-Levanon, S., K. Y. San, and G. N. Bennett. 2005. Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli. Metab. Eng. 7:364-374.
    • (2005) Metab. Eng , vol.7 , pp. 364-374
    • Shalel-Levanon, S.1    San, K.Y.2    Bennett, G.N.3
  • 61
    • 27744565164 scopus 로고    scopus 로고
    • Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions
    • Shalel-Levanon, S., K. Y. San, and G. N. Bennett. 2005. Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions. Biotechnol. Bioeng. 92:147-159.
    • (2005) Biotechnol. Bioeng , vol.92 , pp. 147-159
    • Shalel-Levanon, S.1    San, K.Y.2    Bennett, G.N.3
  • 62
    • 0027507947 scopus 로고
    • Differences in sensitivity to NADH of purified pyruvate dehydrogenase complexes of Enterococcus faecalis, Lactococcus lactis, Azotobacter vinelandii, and Escherichia coli: Implications for their activity in vivo
    • Snoep, J. L., M. R. de Graef, A. H. Westphal, A. de Kok, M. J. Teixeira de Mattos, and O. M. Neijssel. 1993. Differences in sensitivity to NADH of purified pyruvate dehydrogenase complexes of Enterococcus faecalis, Lactococcus lactis, Azotobacter vinelandii, and Escherichia coli: implications for their activity in vivo. FEMS Microbiol. Lett. 114:279-283.
    • (1993) FEMS Microbiol. Lett , vol.114 , pp. 279-283
    • Snoep, J.L.1    de Graef, M.R.2    Westphal, A.H.3    de Kok, A.4    Teixeira de Mattos, M.J.5    Neijssel, O.M.6
  • 65
    • 0032600888 scopus 로고    scopus 로고
    • Metabolic fluxes and metabolic engineering
    • Stephanopoulos, G. 1999. Metabolic fluxes and metabolic engineering. Metab. Eng. 1:1-11.
    • (1999) Metab. Eng , vol.1 , pp. 1-11
    • Stephanopoulos, G.1
  • 66
    • 0029146299 scopus 로고
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
    • 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232:433-448.
    • (1995) Eur. J. Biochem , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 67
    • 0036956418 scopus 로고    scopus 로고
    • Genetic changes to optimize carbon partitioning between ethanol and biosynthesis in ethanologenic Escherichia coli
    • Underwood, S. A., S. Zhou, T. B. Causey, L. P. Yomano, K. T. Shanmugam, and L. O. Ingram. 2002. Genetic changes to optimize carbon partitioning between ethanol and biosynthesis in ethanologenic Escherichia coli. Appl. Environ. Microbiol. 68:6263-6272.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 6263-6272
    • Underwood, S.A.1    Zhou, S.2    Causey, T.B.3    Yomano, L.P.4    Shanmugam, K.T.5    Ingram, L.O.6
  • 68
    • 0037145633 scopus 로고    scopus 로고
    • Correcting mass isotopomer distributions for naturally occurring isotopes
    • van Winden, W. A., C. Wittman, E. Heinzle, and J. J. Heijnen. 2002. Correcting mass isotopomer distributions for naturally occurring isotopes. Biotechnol. Bioeng. 80:477-479.
    • (2002) Biotechnol. Bioeng , vol.80 , pp. 477-479
    • van Winden, W.A.1    Wittman, C.2    Heinzle, E.3    Heijnen, J.J.4
  • 70
    • 0026334731 scopus 로고
    • Physiology of yeasts in relation to biomass yield
    • Verduyn, C. 1991. Physiology of yeasts in relation to biomass yield. Antonie van Leeuwenhoek 60:325-353.
    • (1991) Antonie van Leeuwenhoek , vol.60 , pp. 325-353
    • Verduyn, C.1
  • 71
    • 0002363460 scopus 로고
    • Citrate synthase from Escherichia coli
    • Weitzman, P. D. J. 1969. Citrate synthase from Escherichia coli. Methods Enzymol. 13:22-26.
    • (1969) Methods Enzymol , vol.13 , pp. 22-26
    • Weitzman, P.D.J.1
  • 72
    • 0031554635 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments
    • Wiechert, W., and A. A. de Graaf. 1997. Bidirectional reaction steps in metabolic networks: I. Modeling and simulation of carbon isotope labeling experiments. Biotechnol. Bioeng. 55:101-117.
    • (1997) Biotechnol. Bioeng , vol.55 , pp. 101-117
    • Wiechert, W.1    de Graaf, A.A.2
  • 73
    • 0034741983 scopus 로고    scopus 로고
    • 13C metabolic flux analysis
    • 13C metabolic flux analysis. Metab. Eng. 3:195-206.
    • (2001) Metab. Eng , vol.3 , pp. 195-206
    • Wiechert, W.1
  • 74
    • 0033107572 scopus 로고    scopus 로고
    • Redistribution of metabolic fluxes in Escherichia coli with fermentative lactate dehydrogenase overexpression and deletion
    • Yang, Y. T., K. Y. San, and G. N. Bennett. 1999. Redistribution of metabolic fluxes in Escherichia coli with fermentative lactate dehydrogenase overexpression and deletion. Metab. Eng. 1:141-152.
    • (1999) Metab. Eng , vol.1 , pp. 141-152
    • Yang, Y.T.1    San, K.Y.2    Bennett, G.N.3
  • 75
    • 0037422210 scopus 로고    scopus 로고
    • 13C-labeled acetate and glucose using GC-MS and powerful flux calculation method
    • 13C-labeled acetate and glucose using GC-MS and powerful flux calculation method. J. Biotechnol. 101:101-117.
    • (2003) J. Biotechnol , vol.101 , pp. 101-117
    • Zhao, J.1    Shimizu, K.2
  • 76
    • 33749493377 scopus 로고    scopus 로고
    • Effect of the global redox sensing/regulation networks on Escherichia coli and metabolic flux distribution based on C-13 labeling experiments
    • Zhu, J., S. Shalel-Levanon, G. N. Bennett, and K. Y. San. 2006. Effect of the global redox sensing/regulation networks on Escherichia coli and metabolic flux distribution based on C-13 labeling experiments. Metab. Eng. 8:619-627.
    • (2006) Metab. Eng , vol.8 , pp. 619-627
    • Zhu, J.1    Shalel-Levanon, S.2    Bennett, G.N.3    San, K.Y.4
  • 77
    • 34247522694 scopus 로고    scopus 로고
    • The YfiD protein contributes to the pyruvate formate-lyase flux in an Escherichia coli arcA mutant strain
    • Zhu, J., S. Shalel-Levanon, G. N. Bennett, and K. Y. San. 2007. The YfiD protein contributes to the pyruvate formate-lyase flux in an Escherichia coli arcA mutant strain. Biotechnol. Bioeng. 97:138-143.
    • (2007) Biotechnol. Bioeng , vol.97 , pp. 138-143
    • Zhu, J.1    Shalel-Levanon, S.2    Bennett, G.N.3    San, K.Y.4
  • 78
    • 0028036096 scopus 로고
    • Modeling of isotope distribution and intracellular fluxes in metabolic networks using atom mapping matrices
    • Zupke, C., and G. Stephanopoulos. 1994. Modeling of isotope distribution and intracellular fluxes in metabolic networks using atom mapping matrices. Biotechnol. Prog. 10:489-498.
    • (1994) Biotechnol. Prog , vol.10 , pp. 489-498
    • Zupke, C.1    Stephanopoulos, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.