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Volumn 181, Issue 21, 1999, Pages 6679-6688

Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL METABOLISM; CARBON DIOXIDE FIXATION; ENVIRONMENTAL FACTOR; ESCHERICHIA COLI; HEREDITY; NONHUMAN; PRIORITY JOURNAL;

EID: 0032753923     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.21.6679-6688.1999     Document Type: Article
Times cited : (304)

References (43)
  • 1
    • 0002739483 scopus 로고    scopus 로고
    • Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Bachmann, B. J. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 2460-2488. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 2460-2488
    • Bachmann, B.J.1
  • 2
    • 0001594959 scopus 로고
    • Optimized recording of heteronuclear multidimensional NMR spectra using pulsed field gradients
    • Bax, A., and S. Pochapsky. 1992. Optimized recording of heteronuclear multidimensional NMR spectra using pulsed field gradients. J. Magn. Reson. 99:638-643.
    • (1992) J. Magn. Reson. , vol.99 , pp. 638-643
    • Bax, A.1    Pochapsky, S.2
  • 3
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen, G., and D. Ruben. 1980. Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Lett. 69:185-188.
    • (1980) Chem. Phys. Lett. , vol.69 , pp. 185-188
    • Bodenhausen, G.1    Ruben, D.2
  • 4
    • 0030701516 scopus 로고    scopus 로고
    • Control of metabolic flux in yeasts and fungi
    • Brown, A. J. P. 1997. Control of metabolic flux in yeasts and fungi. Trends Biotechnol. 15:445-447.
    • (1997) Trends Biotechnol. , vol.15 , pp. 445-447
    • Brown, A.J.P.1
  • 5
    • 49549134320 scopus 로고
    • Digital filtering with a sinusoidal window function: An alternative technique for resolution enhancement in FT NMR
    • DeMarco, A., and K. Wüthrich. 1976. Digital filtering with a sinusoidal window function: an alternative technique for resolution enhancement in FT NMR. J. Magn. Reson. 24:201-204.
    • (1976) J. Magn. Reson. , vol.24 , pp. 201-204
    • DeMarco, A.1    Wüthrich, K.2
  • 6
    • 0033107827 scopus 로고    scopus 로고
    • Glucose catabolism of Escherichia coli strains with increased activity and altered regulation of key glycolytic enzymes
    • Emmerling, M., J. E. Bailey, and U. Sauer. 1999. Glucose catabolism of Escherichia coli strains with increased activity and altered regulation of key glycolytic enzymes. Metab. Eng. 1:117-127.
    • (1999) Metab. Eng. , vol.1 , pp. 117-127
    • Emmerling, M.1    Bailey, J.E.2    Sauer, U.3
  • 8
    • 0027103941 scopus 로고
    • Genetics and intermediary metabolism
    • Fraenkel, D. G. 1992. Genetics and intermediary metabolism. Annu. Rev. Genet. 26:159-177.
    • (1992) Annu. Rev. Genet. , vol.26 , pp. 159-177
    • Fraenkel, D.G.1
  • 9
    • 0001281745 scopus 로고    scopus 로고
    • Glycolysis
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Fraenkel, D. G. 1996. Glycolysis, p. 189-198. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 189-198
    • Fraenkel, D.G.1
  • 10
    • 0021192787 scopus 로고
    • Regulation of transcription of the Escherichia coli phosphoenolpyruvate carboxykinase locus: Studies with pck-lacZ operon fusions
    • Goldie, H. 1984. Regulation of transcription of the Escherichia coli phosphoenolpyruvate carboxykinase locus: studies with pck-lacZ operon fusions. J. Bacteriol. 159:832-836.
    • (1984) J. Bacteriol. , vol.159 , pp. 832-836
    • Goldie, H.1
  • 12
    • 0000088628 scopus 로고
    • Processing of multi-dimensional NMR data with the new software PROSA
    • Güntert, P., V. Dötsch, G. Wider, and K. Wüthrich. 1992. Processing of multi-dimensional NMR data with the new software PROSA. J. Biomol. NMR 2:619-629.
    • (1992) J. Biomol. NMR , vol.2 , pp. 619-629
    • Güntert, P.1    Dötsch, V.2    Wider, G.3    Wüthrich, K.4
  • 13
    • 0032485838 scopus 로고    scopus 로고
    • Application of mathematical tools for metabolic design of microbial ethanol production
    • Hatzimanikatis, V., M. Emmerling, U. Sauer, and J. E. Bailey. 1998. Application of mathematical tools for metabolic design of microbial ethanol production. Biotechnol. Bioeng. 58:154-161.
    • (1998) Biotechnol. Bioeng. , vol.58 , pp. 154-161
    • Hatzimanikatis, V.1    Emmerling, M.2    Sauer, U.3    Bailey, J.E.4
  • 14
    • 0031398974 scopus 로고    scopus 로고
    • Protein identification in the post-genome era: The rapid rise of proteomics
    • James, P. 1997. Protein identification in the post-genome era: the rapid rise of proteomics. Q. Rev. Biophys. 30:279-331.
    • (1997) Q. Rev. Biophys. , vol.30 , pp. 279-331
    • James, P.1
  • 15
    • 0015693684 scopus 로고
    • 18O studies on the oxidative and nonoxidative pentose phosphate pathways in wild-type and mutant Escherichia coli cells
    • 18O studies on the oxidative and nonoxidative pentose phosphate pathways in wild-type and mutant Escherichia coli cells. Biochemistry 12:1969-1977.
    • (1973) Biochemistry , vol.12 , pp. 1969-1977
    • Johnson, R.1    Krasna, A.I.2    Rittenberg, D.3
  • 16
    • 0032032781 scopus 로고    scopus 로고
    • Metabolic databases
    • Karp, P. 1998. Metabolic databases. Trends Biochem. Sci. 23:114-116.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 114-116
    • Karp, P.1
  • 18
    • 45249127991 scopus 로고
    • Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins
    • Marion, D., M. Ikura, R. Tschudin, and A. Bax. 1989. Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins. J. Magn. Reson. 85:393-399.
    • (1989) J. Magn. Reson. , vol.85 , pp. 393-399
    • Marion, D.1    Ikura, M.2    Tschudin, R.3    Bax, A.4
  • 19
    • 0030050268 scopus 로고    scopus 로고
    • Determination of the fluxes in the central metabolism of Corynebacterium glutamicum by nuclear magnetic resonance spectroscopy combined with metabolite balancing
    • Marx, A., A. A. de Graaf, W. Wiechert, L. Eggeling, and H. Sahm. 1996. Determination of the fluxes in the central metabolism of Corynebacterium glutamicum by nuclear magnetic resonance spectroscopy combined with metabolite balancing. Biotechnol. Bioeng. 49:111-129.
    • (1996) Biotechnol. Bioeng. , vol.49 , pp. 111-129
    • Marx, A.1    De Graaf, A.A.2    Wiechert, W.3    Eggeling, L.4    Sahm, H.5
  • 21
    • 0001311831 scopus 로고    scopus 로고
    • Growth yield and energy distribution
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Neijssel, O. M., M. J. Teixeira de Mattos, and D. W. Tempest. 1996. Growth yield and energy distribution, p. 1683-1692. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 1683-1692
    • Neijssel, O.M.1    Teixeira De Mattos, M.J.2    Tempest, D.W.3
  • 23
    • 0025825737 scopus 로고
    • Genetic improvement of Escherichia coli for ethanol production: Chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II
    • Ohta, K., D. S. Beall, J. P. Mejia, K. T. Shanmugam, and L. O. Ingram. 1991. Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl. Environ. Microbiol. 57:893-900.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 893-900
    • Ohta, K.1    Beall, D.S.2    Mejia, J.P.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 24
    • 45449123834 scopus 로고
    • Efficient purging scheme for proton- detected heteronuclear two-dimensional NMR
    • Otting, G., and K. Wüthrich. 1988. Efficient purging scheme for proton- detected heteronuclear two-dimensional NMR. J. Magn. Reson. 76:569-574.
    • (1988) J. Magn. Reson. , vol.76 , pp. 569-574
    • Otting, G.1    Wüthrich, K.2
  • 25
    • 0029610838 scopus 로고
    • Cloning of the two pyruvate kinase isoenzyme structural genes from Escherichia coli: The relative roles of these enzymes in pyruvate biosynthesis
    • Ponce, E., N. Flores, A. Martinez, F. Valle, and F. Bolivar. 1995. Cloning of the two pyruvate kinase isoenzyme structural genes from Escherichia coli: the relative roles of these enzymes in pyruvate biosynthesis. J. Bacteriol. 177: 5719-5722.
    • (1995) J. Bacteriol. , vol.177 , pp. 5719-5722
    • Ponce, E.1    Flores, N.2    Martinez, A.3    Valle, F.4    Bolivar, F.5
  • 26
    • 2642704983 scopus 로고    scopus 로고
    • Stimulation of glucose catabolism through the pentose phosphate pathway by the absence of the two pyruvate kinase isoenzymes in Escherichia coli
    • Ponce, E., A. Martinez, F. Bolivar, and F. Valle. 1998. Stimulation of glucose catabolism through the pentose phosphate pathway by the absence of the two pyruvate kinase isoenzymes in Escherichia coli. Biotechnol. Bioeng. 58:292-295.
    • (1998) Biotechnol. Bioeng. , vol.58 , pp. 292-295
    • Ponce, E.1    Martinez, A.2    Bolivar, F.3    Valle, F.4
  • 28
    • 13444269041 scopus 로고
    • Computer-optimized decoupling scheme for wideband applications and low-level operation
    • Shaka, A. J., P. B. Barker, and R. Freemann. 1985. Computer-optimized decoupling scheme for wideband applications and low-level operation. J. Magn. Reson. 64:547-552.
    • (1985) J. Magn. Reson. , vol.64 , pp. 547-552
    • Shaka, A.J.1    Barker, P.B.2    Freemann, R.3
  • 30
    • 0029146299 scopus 로고
    • 13C-labeling of proteinogenic amino acids: An efficient analytical tool to investigate intermediary metabolism
    • 13C-labeling of proteinogenic amino acids: an efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232:433-448.
    • (1995) Eur. J. Biochem. , vol.232 , pp. 433-448
    • Szyperski, T.1
  • 31
    • 0031594984 scopus 로고    scopus 로고
    • 13C-NMR, MS and metabolic flux balancing in biotechnological research
    • 13C-NMR, MS and metabolic flux balancing in biotechnological research. Q. Rev. Biophys. 31:41-106.
    • (1998) Q. Rev. Biophys. , vol.31 , pp. 41-106
    • Szyperski, T.1
  • 35
    • 0015452659 scopus 로고
    • Effect of oxygen on several enzymes involved in the aerobic and anaerobic utilization of glucose in Escherichia coli
    • Thomas, A. D., H. W. Doelle, A. W. Westwood, and G. L. Gordon. 1972. Effect of oxygen on several enzymes involved in the aerobic and anaerobic utilization of glucose in Escherichia coli. J. Bacteriol. 112:1099-1105.
    • (1972) J. Bacteriol. , vol.112 , pp. 1099-1105
    • Thomas, A.D.1    Doelle, H.W.2    Westwood, A.W.3    Gordon, G.L.4
  • 36
    • 0031606598 scopus 로고    scopus 로고
    • A panoramic view of bacterial transcription
    • Tomb, J.-F. 1998. A panoramic view of bacterial transcription. Nat. Biotechnol. 16:23.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 23
    • Tomb, J.-F.1
  • 37
    • 84883928682 scopus 로고
    • Nonoxidative carboxylation and decarboxylation
    • P. D. Boyer, H. Lardy, and K. Myrbäck (ed.). Academic Press, Inc., New York, N.Y.
    • Utter, M. F. 1961. Nonoxidative carboxylation and decarboxylation, p. 320-343. In P. D. Boyer, H. Lardy, and K. Myrbäck (ed.), Hydrolytic cleavage (part B), vol. 5. Academic Press, Inc., New York, N.Y.
    • (1961) Hydrolytic Cleavage (Part B) , vol.5 , pp. 320-343
    • Utter, M.F.1
  • 38
    • 0026318116 scopus 로고
    • Quantification of control of microbial metabolism by substrates and enzymes
    • van Dam, K., and N. Jansen. 1991. Quantification of control of microbial metabolism by substrates and enzymes. Antonie Leeuwenhoek 60:209-223.
    • (1991) Antonie Leeuwenhoek , vol.60 , pp. 209-223
    • Van Dam, K.1    Jansen, N.2
  • 39
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific, and practical use
    • Varma, A., and B. O. Palsson. 1994. Metabolic flux balancing: basic concepts, scientific, and practical use. Bio/Technology 12:994-998.
    • (1994) Bio/Technology , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 40
    • 43949164434 scopus 로고
    • A simple experimental scheme using pulsed field gradients for coherence pathway rejection and solvent suppression in phase-sensitive heteronuclear correlation spectra
    • Wider, G., and K. Wüthrich. 1993. A simple experimental scheme using pulsed field gradients for coherence pathway rejection and solvent suppression in phase-sensitive heteronuclear correlation spectra. J. Magn. Reson. 102:239-241.
    • (1993) J. Magn. Reson. , vol.102 , pp. 239-241
    • Wider, G.1    Wüthrich, K.2
  • 41
    • 0031554628 scopus 로고    scopus 로고
    • Bidirectional reaction steps in metabolic networks. II. Flux estimation and statistical analysis
    • Wiechert, W., C. Siefke, A. A. de Graaf, and A. Marx. 1997. Bidirectional reaction steps in metabolic networks. II. Flux estimation and statistical analysis. Biotechnol. Bioeng. 55:118-135.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 118-135
    • Wiechert, W.1    Siefke, C.2    De Graaf, A.A.3    Marx, A.4
  • 43
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


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